EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027774 (Gene tree)
Gene ID: 28030
Gene Symbol: Gfm1
Alias: D3Wsu133e
Full Name: G elongation factor%2C mitochondrial 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 46434 bases
Position: chr3:67430096-67476529
Accession: 107339
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000076503	GTP_EFTU	PF00009.27	2.7e-63	1	1
ENSMUSP00000076503	GTP_EFTU_D2	PF03144.25	1.1e-16	1	1
ENSMUSP00000076503	EFG_IV	PF03764.18	2.1e-33	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000161009	-	1971	-	-	- (aa)	-	-
ENSMUST00000077271	-	4078	-	ENSMUSP00000076503	751 (aa)	-	Q8K0D5
ENSMUST00000160529	-	924	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027774's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027774's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000027774	Gfm1	73	38.926	ENSMUSG00000034994	Eef2	73	38.926
ENSMUSG00000027774	Gfm1	92	34.789	ENSMUSG00000021666	Gfm2	91	35.061
ENSMUSG00000027774	Gfm1	50	32.692	ENSMUSG00000029208	Guf1	68	32.692

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027774	Gfm1	98	91.304	ENSG00000168827	GFM1	100	98.333	Homo_sapiens
ENSMUSG00000027774	Gfm1	89	79.491	ENSAPOG00000016489	gfm1	96	79.491	Acanthochromis_polyacanthus
ENSMUSG00000027774	Gfm1	98	92.016	ENSAMEG00000013542	GFM1	100	91.645	Ailuropoda_melanoleuca
ENSMUSG00000027774	Gfm1	95	76.602	ENSACIG00000014465	gfm1	93	76.602	Amphilophus_citrinellus
ENSMUSG00000027774	Gfm1	95	80.618	ENSAOCG00000006023	gfm1	95	80.618	Amphiprion_ocellaris
ENSMUSG00000027774	Gfm1	95	80.618	ENSAPEG00000024499	gfm1	98	80.337	Amphiprion_percula
ENSMUSG00000027774	Gfm1	100	78.296	ENSATEG00000013789	gfm1	100	78.296	Anabas_testudineus
ENSMUSG00000027774	Gfm1	95	83.287	ENSAPLG00000005022	GFM1	99	83.287	Anas_platyrhynchos
ENSMUSG00000027774	Gfm1	97	82.782	ENSACAG00000006829	GFM1	98	82.782	Anolis_carolinensis
ENSMUSG00000027774	Gfm1	100	90.716	ENSANAG00000035983	GFM1	100	90.716	Aotus_nancymaae
ENSMUSG00000027774	Gfm1	95	82.287	ENSACLG00000016586	gfm1	98	80.972	Astatotilapia_calliptera
ENSMUSG00000027774	Gfm1	100	79.095	ENSAMXG00000013435	gfm1	98	80.081	Astyanax_mexicanus
ENSMUSG00000027774	Gfm1	100	93.227	ENSBTAG00000027795	GFM1	100	93.227	Bos_taurus
ENSMUSG00000027774	Gfm1	97	55.163	WBGene00009246	gfm-1	99	55.020	Caenorhabditis_elegans
ENSMUSG00000027774	Gfm1	100	91.114	ENSCJAG00000000363	GFM1	100	91.114	Callithrix_jacchus
ENSMUSG00000027774	Gfm1	98	92.809	ENSCAFG00000009006	GFM1	100	94.083	Canis_familiaris
ENSMUSG00000027774	Gfm1	98	92.963	ENSCAFG00020005878	GFM1	99	93.785	Canis_lupus_dingo
ENSMUSG00000027774	Gfm1	100	93.360	ENSCHIG00000015220	GFM1	100	93.360	Capra_hircus
ENSMUSG00000027774	Gfm1	100	91.766	ENSTSYG00000002013	GFM1	100	91.766	Carlito_syrichta
ENSMUSG00000027774	Gfm1	98	79.919	ENSCAPG00000005699	GFM1	99	79.919	Cavia_aperea
ENSMUSG00000027774	Gfm1	100	90.981	ENSCPOG00000001194	GFM1	100	90.981	Cavia_porcellus
ENSMUSG00000027774	Gfm1	100	91.114	ENSCCAG00000025561	GFM1	100	91.114	Cebus_capucinus
ENSMUSG00000027774	Gfm1	100	90.849	ENSCATG00000037622	GFM1	100	90.849	Cercocebus_atys
ENSMUSG00000027774	Gfm1	98	91.081	ENSCLAG00000002503	GFM1	99	90.629	Chinchilla_lanigera
ENSMUSG00000027774	Gfm1	100	90.716	ENSCSAG00000012162	GFM1	100	90.716	Chlorocebus_sabaeus
ENSMUSG00000027774	Gfm1	100	83.289	ENSCHOG00000004867	GFM1	100	83.289	Choloepus_hoffmanni
ENSMUSG00000027774	Gfm1	100	82.290	ENSCPBG00000018367	GFM1	99	82.290	Chrysemys_picta_bellii
ENSMUSG00000027774	Gfm1	95	59.336	ENSCING00000011960	-	94	59.336	Ciona_intestinalis
ENSMUSG00000027774	Gfm1	95	60.333	ENSCSAVG00000008514	-	99	60.333	Ciona_savignyi
ENSMUSG00000027774	Gfm1	98	91.712	ENSCANG00000031714	GFM1	100	90.981	Colobus_angolensis_palliatus
ENSMUSG00000027774	Gfm1	100	95.073	ENSCGRG00001022095	GFM1	100	95.073	Cricetulus_griseus_chok1gshd
ENSMUSG00000027774	Gfm1	100	95.073	ENSCGRG00000012043	GFM1	100	95.073	Cricetulus_griseus_crigri
ENSMUSG00000027774	Gfm1	95	76.290	ENSCSEG00000017088	gfm1	98	76.290	Cynoglossus_semilaevis
ENSMUSG00000027774	Gfm1	99	80.563	ENSCVAG00000004126	gfm1	99	81.690	Cyprinodon_variegatus
ENSMUSG00000027774	Gfm1	100	77.364	ENSDARG00000063624	gfm1	100	77.364	Danio_rerio
ENSMUSG00000027774	Gfm1	54	89.242	ENSDNOG00000016385	-	100	89.242	Dasypus_novemcinctus
ENSMUSG00000027774	Gfm1	100	89.362	ENSDORG00000014165	Gfm1	100	89.362	Dipodomys_ordii
ENSMUSG00000027774	Gfm1	94	67.560	FBgn0263133	mEFG1	95	67.560	Drosophila_melanogaster
ENSMUSG00000027774	Gfm1	98	82.186	ENSETEG00000019197	GFM1	100	81.878	Echinops_telfairi
ENSMUSG00000027774	Gfm1	90	67.259	ENSEBUG00000012794	gfm1	99	67.259	Eptatretus_burgeri
ENSMUSG00000027774	Gfm1	96	68.414	ENSEEUG00000000429	GFM1	99	68.414	Erinaceus_europaeus
ENSMUSG00000027774	Gfm1	100	77.364	ENSELUG00000014728	gfm1	100	77.364	Esox_lucius
ENSMUSG00000027774	Gfm1	98	92.963	ENSFCAG00000013291	GFM1	100	92.706	Felis_catus
ENSMUSG00000027774	Gfm1	90	83.407	ENSFALG00000007619	GFM1	100	83.407	Ficedula_albicollis
ENSMUSG00000027774	Gfm1	100	90.053	ENSFDAG00000016559	GFM1	100	90.053	Fukomys_damarensis
ENSMUSG00000027774	Gfm1	100	79.095	ENSFHEG00000006091	gfm1	100	79.095	Fundulus_heteroclitus
ENSMUSG00000027774	Gfm1	95	78.779	ENSGMOG00000010161	gfm1	99	78.779	Gadus_morhua
ENSMUSG00000027774	Gfm1	98	81.471	ENSGALG00000009634	GFM1	99	81.471	Gallus_gallus
ENSMUSG00000027774	Gfm1	100	79.627	ENSGAFG00000012527	gfm1	100	79.627	Gambusia_affinis
ENSMUSG00000027774	Gfm1	99	77.660	ENSGACG00000009864	gfm1	99	77.660	Gasterosteus_aculeatus
ENSMUSG00000027774	Gfm1	98	91.576	ENSGGOG00000003085	GFM1	100	90.849	Gorilla_gorilla
ENSMUSG00000027774	Gfm1	95	82.287	ENSHBUG00000002120	gfm1	96	82.287	Haplochromis_burtoni
ENSMUSG00000027774	Gfm1	98	91.204	ENSHGLG00000016855	GFM1	100	90.318	Heterocephalus_glaber_female
ENSMUSG00000027774	Gfm1	98	91.204	ENSHGLG00100013049	GFM1	100	90.318	Heterocephalus_glaber_male
ENSMUSG00000027774	Gfm1	95	80.899	ENSHCOG00000007638	gfm1	97	80.874	Hippocampus_comes
ENSMUSG00000027774	Gfm1	97	79.862	ENSIPUG00000005873	gfm1	100	78.029	Ictalurus_punctatus
ENSMUSG00000027774	Gfm1	100	89.628	ENSSTOG00000010150	GFM1	100	89.628	Ictidomys_tridecemlineatus
ENSMUSG00000027774	Gfm1	100	91.611	ENSJJAG00000016447	Gfm1	100	91.611	Jaculus_jaculus
ENSMUSG00000027774	Gfm1	100	77.364	ENSKMAG00000020768	gfm1	100	77.364	Kryptolebias_marmoratus
ENSMUSG00000027774	Gfm1	93	80.884	ENSLBEG00000021315	gfm1	100	80.884	Labrus_bergylta
ENSMUSG00000027774	Gfm1	100	79.494	ENSLACG00000012295	GFM1	100	79.494	Latimeria_chalumnae
ENSMUSG00000027774	Gfm1	95	76.741	ENSLOCG00000003778	gfm1	99	76.741	Lepisosteus_oculatus
ENSMUSG00000027774	Gfm1	99	88.727	ENSLAFG00000010945	GFM1	100	88.828	Loxodonta_africana
ENSMUSG00000027774	Gfm1	100	91.114	ENSMFAG00000035731	GFM1	100	91.114	Macaca_fascicularis
ENSMUSG00000027774	Gfm1	100	91.247	ENSMMUG00000004961	GFM1	100	91.247	Macaca_mulatta
ENSMUSG00000027774	Gfm1	100	90.981	ENSMNEG00000033245	GFM1	100	90.981	Macaca_nemestrina
ENSMUSG00000027774	Gfm1	96	90.207	ENSMLEG00000030908	GFM1	100	89.771	Mandrillus_leucophaeus
ENSMUSG00000027774	Gfm1	95	81.729	ENSMAMG00000011760	gfm1	96	81.729	Mastacembelus_armatus
ENSMUSG00000027774	Gfm1	95	82.287	ENSMZEG00005016639	gfm1	96	82.287	Maylandia_zebra
ENSMUSG00000027774	Gfm1	95	82.706	ENSMGAG00000010641	GFM1	96	82.706	Meleagris_gallopavo
ENSMUSG00000027774	Gfm1	100	94.940	ENSMAUG00000000611	Gfm1	100	94.940	Mesocricetus_auratus
ENSMUSG00000027774	Gfm1	98	92.527	ENSMICG00000049086	GFM1	100	91.645	Microcebus_murinus
ENSMUSG00000027774	Gfm1	100	95.206	ENSMOCG00000000465	Gfm1	100	95.206	Microtus_ochrogaster
ENSMUSG00000027774	Gfm1	95	80.335	ENSMMOG00000012538	gfm1	97	80.335	Mola_mola
ENSMUSG00000027774	Gfm1	100	85.087	ENSMODG00000015673	GFM1	100	85.087	Monodelphis_domestica
ENSMUSG00000027774	Gfm1	95	81.032	ENSMALG00000012508	gfm1	95	81.032	Monopterus_albus
ENSMUSG00000027774	Gfm1	100	99.334	MGP_CAROLIEiJ_G0025052	Gfm1	100	99.334	Mus_caroli
ENSMUSG00000027774	Gfm1	100	98.402	MGP_PahariEiJ_G0026495	Gfm1	100	98.402	Mus_pahari
ENSMUSG00000027774	Gfm1	100	100.000	MGP_SPRETEiJ_G0025994	Gfm1	100	100.000	Mus_spretus
ENSMUSG00000027774	Gfm1	100	91.512	ENSMPUG00000002859	GFM1	100	91.512	Mustela_putorius_furo
ENSMUSG00000027774	Gfm1	100	92.042	ENSMLUG00000000452	GFM1	100	92.042	Myotis_lucifugus
ENSMUSG00000027774	Gfm1	100	93.209	ENSNGAG00000012375	Gfm1	100	93.209	Nannospalax_galili
ENSMUSG00000027774	Gfm1	95	82.008	ENSNBRG00000004631	gfm1	98	82.008	Neolamprologus_brichardi
ENSMUSG00000027774	Gfm1	98	91.712	ENSNLEG00000004176	GFM1	100	90.981	Nomascus_leucogenys
ENSMUSG00000027774	Gfm1	91	78.770	ENSMEUG00000007784	GFM1	99	78.770	Notamacropus_eugenii
ENSMUSG00000027774	Gfm1	100	89.096	ENSOPRG00000009860	GFM1	100	89.096	Ochotona_princeps
ENSMUSG00000027774	Gfm1	98	91.746	ENSODEG00000004316	GFM1	100	90.981	Octodon_degus
ENSMUSG00000027774	Gfm1	95	82.287	ENSONIG00000003772	gfm1	96	82.287	Oreochromis_niloticus
ENSMUSG00000027774	Gfm1	98	93.369	ENSOCUG00000013561	GFM1	100	92.838	Oryctolagus_cuniculus
ENSMUSG00000027774	Gfm1	94	81.780	ENSORLG00000006487	gfm1	100	81.780	Oryzias_latipes
ENSMUSG00000027774	Gfm1	95	81.450	ENSORLG00020003362	gfm1	96	81.450	Oryzias_latipes_hni
ENSMUSG00000027774	Gfm1	95	81.032	ENSORLG00015005829	gfm1	96	81.032	Oryzias_latipes_hsok
ENSMUSG00000027774	Gfm1	95	81.869	ENSOMEG00000012894	gfm1	96	81.869	Oryzias_melastigma
ENSMUSG00000027774	Gfm1	100	91.114	ENSOGAG00000008298	GFM1	100	91.114	Otolemur_garnettii
ENSMUSG00000027774	Gfm1	96	93.398	ENSOARG00000002409	GFM1	100	93.398	Ovis_aries
ENSMUSG00000027774	Gfm1	98	91.576	ENSPPAG00000033881	GFM1	100	90.849	Pan_paniscus
ENSMUSG00000027774	Gfm1	98	92.963	ENSPPRG00000009281	GFM1	100	92.706	Panthera_pardus
ENSMUSG00000027774	Gfm1	98	92.828	ENSPTIG00000012416	GFM1	100	92.573	Panthera_tigris_altaica
ENSMUSG00000027774	Gfm1	98	91.576	ENSPTRG00000015570	GFM1	100	90.849	Pan_troglodytes
ENSMUSG00000027774	Gfm1	100	90.981	ENSPANG00000016512	GFM1	100	90.981	Papio_anubis
ENSMUSG00000027774	Gfm1	100	78.695	ENSPKIG00000004876	gfm1	100	78.695	Paramormyrops_kingsleyae
ENSMUSG00000027774	Gfm1	100	81.092	ENSPSIG00000012567	GFM1	99	81.092	Pelodiscus_sinensis
ENSMUSG00000027774	Gfm1	95	79.277	ENSPMGG00000014068	gfm1	99	79.277	Periophthalmus_magnuspinnatus
ENSMUSG00000027774	Gfm1	100	95.073	ENSPEMG00000008942	Gfm1	100	95.073	Peromyscus_maniculatus_bairdii
ENSMUSG00000027774	Gfm1	85	85.023	ENSPCIG00000020195	GFM1	98	85.023	Phascolarctos_cinereus
ENSMUSG00000027774	Gfm1	100	80.160	ENSPFOG00000011022	gfm1	100	80.160	Poecilia_formosa
ENSMUSG00000027774	Gfm1	95	82.845	ENSPLAG00000019585	gfm1	100	79.580	Poecilia_latipinna
ENSMUSG00000027774	Gfm1	100	80.027	ENSPMEG00000012376	gfm1	100	80.027	Poecilia_mexicana
ENSMUSG00000027774	Gfm1	100	79.760	ENSPREG00000001332	gfm1	95	79.760	Poecilia_reticulata
ENSMUSG00000027774	Gfm1	98	91.848	ENSPPYG00000014244	GFM1	100	91.114	Pongo_abelii
ENSMUSG00000027774	Gfm1	93	87.482	ENSPCAG00000008934	GFM1	100	87.482	Procavia_capensis
ENSMUSG00000027774	Gfm1	98	92.663	ENSPCOG00000022259	GFM1	100	91.910	Propithecus_coquereli
ENSMUSG00000027774	Gfm1	100	91.512	ENSPVAG00000013605	GFM1	100	91.512	Pteropus_vampyrus
ENSMUSG00000027774	Gfm1	95	82.008	ENSPNYG00000006037	gfm1	97	82.008	Pundamilia_nyererei
ENSMUSG00000027774	Gfm1	100	78.429	ENSPNAG00000001237	gfm1	100	78.429	Pygocentrus_nattereri
ENSMUSG00000027774	Gfm1	100	95.606	ENSRNOG00000012873	Gfm1	100	95.606	Rattus_norvegicus
ENSMUSG00000027774	Gfm1	98	91.576	ENSRBIG00000031363	GFM1	100	90.849	Rhinopithecus_bieti
ENSMUSG00000027774	Gfm1	98	91.712	ENSRROG00000031081	GFM1	100	90.981	Rhinopithecus_roxellana
ENSMUSG00000027774	Gfm1	92	56.835	YLR069C	-	90	56.835	Saccharomyces_cerevisiae
ENSMUSG00000027774	Gfm1	100	91.512	ENSSBOG00000023252	GFM1	100	91.512	Saimiri_boliviensis_boliviensis
ENSMUSG00000027774	Gfm1	99	86.461	ENSSHAG00000017772	GFM1	99	86.461	Sarcophilus_harrisii
ENSMUSG00000027774	Gfm1	100	78.562	ENSSFOG00015003117	gfm1	99	80.690	Scleropages_formosus
ENSMUSG00000027774	Gfm1	100	77.097	ENSSMAG00000013221	gfm1	100	76.565	Scophthalmus_maximus
ENSMUSG00000027774	Gfm1	98	78.940	ENSSDUG00000018665	gfm1	96	80.474	Seriola_dumerili
ENSMUSG00000027774	Gfm1	98	78.833	ENSSLDG00000020606	gfm1	96	80.474	Seriola_lalandi_dorsalis
ENSMUSG00000027774	Gfm1	95	81.032	ENSSPUG00000018686	GFM1	97	81.032	Sphenodon_punctatus
ENSMUSG00000027774	Gfm1	95	80.474	ENSSPAG00000008800	gfm1	96	80.474	Stegastes_partitus
ENSMUSG00000027774	Gfm1	100	91.512	ENSSSCG00000025651	GFM1	100	91.512	Sus_scrofa
ENSMUSG00000027774	Gfm1	100	77.763	ENSTRUG00000009244	gfm1	100	77.763	Takifugu_rubripes
ENSMUSG00000027774	Gfm1	100	78.296	ENSTNIG00000007729	gfm1	100	78.296	Tetraodon_nigroviridis
ENSMUSG00000027774	Gfm1	98	77.868	ENSTBEG00000017404	GFM1	100	77.778	Tupaia_belangeri
ENSMUSG00000027774	Gfm1	98	92.141	ENSTTRG00000001735	GFM1	100	90.753	Tursiops_truncatus
ENSMUSG00000027774	Gfm1	98	92.422	ENSUAMG00000026381	GFM1	100	92.042	Ursus_americanus
ENSMUSG00000027774	Gfm1	98	92.422	ENSUMAG00000011268	GFM1	100	92.042	Ursus_maritimus
ENSMUSG00000027774	Gfm1	100	88.712	ENSVPAG00000009444	GFM1	100	88.712	Vicugna_pacos
ENSMUSG00000027774	Gfm1	99	91.589	ENSVVUG00000020091	GFM1	100	93.639	Vulpes_vulpes
ENSMUSG00000027774	Gfm1	100	82.181	ENSXETG00000032551	GFM1	100	82.181	Xenopus_tropicalis
ENSMUSG00000027774	Gfm1	51	81.606	ENSXCOG00000012590	gfm1	89	81.606	Xiphophorus_couchianus
ENSMUSG00000027774	Gfm1	100	79.494	ENSXMAG00000000261	gfm1	100	79.494	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003746	translation elongation factor activity	21873635.	IBA	Function
GO:0003746	translation elongation factor activity	-	ISO	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	ISO	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0006412	translation	-	IEA	Process
GO:0006414	translational elongation	-	IEA	Process
GO:0070125	mitochondrial translational elongation	21873635.	IBA	Process
GO:0070125	mitochondrial translational elongation	-	ISO	Process