EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000130778	-	1355	-	ENSMUSP00000117579	42 (aa)	-	D6RES2
ENSMUST00000122288	-	1177	-	ENSMUSP00000113502	166 (aa)	-	E9Q6R3
ENSMUST00000130620	-	640	-	ENSMUSP00000142976	62 (aa)	-	A0A0G2JF08
ENSMUST00000199738	-	711	-	-	- (aa)	-	-
ENSMUST00000029476	-	2810	-	ENSMUSP00000029476	215 (aa)	-	O08547

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04130	SNARE interactions in vesicular transport	KEGG
mmu04145	Phagosome	KEGG
mmu05134	Legionellosis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027879	Sec22b	100	100.000	ENSG00000265808	SEC22B	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0000139	Golgi membrane	9094723.11042173.	IDA	Component
GO:0005484	SNAP receptor activity	21873635.	IBA	Function
GO:0005515	protein binding	24705552.	IPI	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	9094723.	IDA	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	21873635.	IBA	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	-	ISO	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	12361953.	TAS	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	21873635.	IBA	Process
GO:0008021	synaptic vesicle	-	ISO	Component
GO:0012507	ER to Golgi transport vesicle membrane	21873635.	IBA	Component
GO:0012507	ER to Golgi transport vesicle membrane	-	ISO	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	9094723.	IDA	Process
GO:0019905	syntaxin binding	-	ISO	Function
GO:0031201	SNARE complex	21873635.	IBA	Component
GO:0045732	positive regulation of protein catabolic process	-	ISO	Process
GO:0048280	vesicle fusion with Golgi apparatus	21873635.	IBA	Process
GO:1902902	negative regulation of autophagosome assembly	-	ISO	Process