EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027881 (Gene tree)
Gene ID: 66921
Gene Symbol: Prpf38b
Alias: 1110021E09Rik
Full Name: PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 8923 bases
Position: chr3:108902805-108911727
Accession: 1914171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000029480	PRP38	PF03371.15	3.7e-57	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000197805	-	3814	-	-	- (aa)	-	-
ENSMUST00000127478	-	556	-	-	- (aa)	-	-
ENSMUST00000029480	-	3026	XM_006501914	ENSMUSP00000029480	542 (aa)	XP_006501977	Q80SY5
ENSMUST00000199735	-	2508	-	ENSMUSP00000142929	182 (aa)	-	A0A0G2JEW4
ENSMUST00000145720	-	2108	-	-	- (aa)	-	-
ENSMUST00000129273	-	3050	-	ENSMUSP00000143724	94 (aa)	-	A0A0G2JGW4
ENSMUST00000156808	-	531	-	-	- (aa)	-	-
ENSMUST00000125208	-	977	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027881's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027881's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027881	Prpf38b	99	96.774	ENSG00000134186	PRPF38B	100	96.335	Homo_sapiens
ENSMUSG00000027881	Prpf38b	99	96.774	ENSANAG00000028333	PRPF38B	100	96.335	Aotus_nancymaae
ENSMUSG00000027881	Prpf38b	99	95.789	ENSCGRG00001018841	Prpf38b	100	95.064	Cricetulus_griseus_chok1gshd
ENSMUSG00000027881	Prpf38b	83	95.133	ENSCGRG00000002972	Prpf38b	100	95.133	Cricetulus_griseus_crigri
ENSMUSG00000027881	Prpf38b	79	88.018	ENSDORG00000025236	-	97	89.524	Dipodomys_ordii
ENSMUSG00000027881	Prpf38b	53	88.000	ENSEBUG00000001683	-	58	72.659	Eptatretus_burgeri
ENSMUSG00000027881	Prpf38b	99	94.624	ENSEEUG00000014328	PRPF38B	100	89.744	Erinaceus_europaeus
ENSMUSG00000027881	Prpf38b	100	88.665	ENSFDAG00000021009	PRPF38B	100	90.676	Fukomys_damarensis
ENSMUSG00000027881	Prpf38b	99	96.774	ENSGGOG00000011288	PRPF38B	100	96.335	Gorilla_gorilla
ENSMUSG00000027881	Prpf38b	91	86.747	ENSMGAG00000006188	PRPF38B	100	86.747	Meleagris_gallopavo
ENSMUSG00000027881	Prpf38b	99	98.925	ENSMAUG00000019131	Prpf38b	100	95.413	Mesocricetus_auratus
ENSMUSG00000027881	Prpf38b	100	99.451	MGP_CAROLIEiJ_G0025542	Prpf38b	100	99.451	Mus_caroli
ENSMUSG00000027881	Prpf38b	100	100.000	MGP_PahariEiJ_G0026988	Prpf38b	100	100.000	Mus_pahari
ENSMUSG00000027881	Prpf38b	100	100.000	MGP_SPRETEiJ_G0026492	Prpf38b	100	100.000	Mus_spretus
ENSMUSG00000027881	Prpf38b	100	85.923	ENSNLEG00000030268	-	100	85.192	Nomascus_leucogenys
ENSMUSG00000027881	Prpf38b	99	96.774	ENSNLEG00000001645	-	100	96.335	Nomascus_leucogenys
ENSMUSG00000027881	Prpf38b	99	96.774	ENSPPAG00000001260	PRPF38B	100	96.335	Pan_paniscus
ENSMUSG00000027881	Prpf38b	99	94.737	ENSPPRG00000002116	PRPF38B	98	97.354	Panthera_pardus
ENSMUSG00000027881	Prpf38b	99	96.774	ENSPTRG00000001032	PRPF38B	100	96.335	Pan_troglodytes
ENSMUSG00000027881	Prpf38b	99	97.849	ENSPANG00000007560	PRPF38B	100	96.859	Papio_anubis
ENSMUSG00000027881	Prpf38b	99	77.083	ENSPCIG00000024841	PRPF38B	61	96.667	Phascolarctos_cinereus
ENSMUSG00000027881	Prpf38b	99	94.737	ENSPVAG00000011929	-	100	92.518	Pteropus_vampyrus
ENSMUSG00000027881	Prpf38b	100	90.942	ENSSARG00000012818	-	100	92.000	Sorex_araneus
ENSMUSG00000027881	Prpf38b	99	73.958	ENSTGUG00000004594	-	100	84.582	Taeniopygia_guttata
ENSMUSG00000027881	Prpf38b	99	96.809	ENSUAMG00000023817	PRPF38B	100	89.982	Ursus_americanus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071011	precatalytic spliceosome	21873635.	IBA	Component