EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027905 (Gene tree)
Gene ID: 53975
Gene Symbol: Ddx20
Alias: GEMIN3|dp103
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 9305 bases
Position: chr3:105678270-105687574
Accession: 1858415
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000088176	ResIII	PF04851.15	4.1e-06	1	1
ENSMUSP00000088176	DEAD	PF00270.29	7.7e-32	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000200078	-	1264	-	ENSMUSP00000142675	139 (aa)	-	A0A0G2JE88
ENSMUST00000090680	-	2905	XM_006501701	ENSMUSP00000088176	825 (aa)	XP_006501764	Q9JJY4
ENSMUST00000132008	-	2257	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027905's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027905's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000027905	Ddx20	50	34.140	ENSMUSG00000005481	Ddx39	90	34.074
ENSMUSG00000027905	Ddx20	50	32.767	ENSMUSG00000032097	Ddx6	78	33.419

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027905	Ddx20	99	82.524	ENSG00000064703	DDX20	99	82.699	Homo_sapiens
ENSMUSG00000027905	Ddx20	95	50.300	ENSAPOG00000017383	DDX20	71	60.755	Acanthochromis_polyacanthus
ENSMUSG00000027905	Ddx20	98	83.026	ENSAMEG00000005344	DDX20	99	82.945	Ailuropoda_melanoleuca
ENSMUSG00000027905	Ddx20	95	50.900	ENSACIG00000013095	ddx20	71	61.977	Amphilophus_citrinellus
ENSMUSG00000027905	Ddx20	95	51.374	ENSAOCG00000013474	DDX20	71	61.905	Amphiprion_ocellaris
ENSMUSG00000027905	Ddx20	95	50.719	ENSAPEG00000006690	ddx20	71	61.905	Amphiprion_percula
ENSMUSG00000027905	Ddx20	95	50.417	ENSATEG00000002941	ddx20	72	61.779	Anabas_testudineus
ENSMUSG00000027905	Ddx20	89	49.800	ENSAPLG00000013826	DDX20	99	49.534	Anas_platyrhynchos
ENSMUSG00000027905	Ddx20	93	59.383	ENSACAG00000006235	DDX20	98	58.922	Anolis_carolinensis
ENSMUSG00000027905	Ddx20	98	82.534	ENSANAG00000037881	DDX20	99	82.454	Aotus_nancymaae
ENSMUSG00000027905	Ddx20	73	61.039	ENSACLG00000009485	ddx20	73	60.940	Astatotilapia_calliptera
ENSMUSG00000027905	Ddx20	77	58.610	ENSAMXG00000040738	ddx20	81	60.328	Astyanax_mexicanus
ENSMUSG00000027905	Ddx20	99	82.864	ENSBTAG00000018717	DDX20	99	82.864	Bos_taurus
ENSMUSG00000027905	Ddx20	98	81.550	ENSCJAG00000013428	DDX20	95	79.877	Callithrix_jacchus
ENSMUSG00000027905	Ddx20	98	82.630	ENSCAFG00000013674	DDX20	100	82.362	Canis_familiaris
ENSMUSG00000027905	Ddx20	99	82.095	ENSCAFG00020008055	DDX20	93	92.581	Canis_lupus_dingo
ENSMUSG00000027905	Ddx20	98	83.558	ENSCHIG00000011219	DDX20	99	83.476	Capra_hircus
ENSMUSG00000027905	Ddx20	97	84.099	ENSTSYG00000000153	DDX20	97	84.119	Carlito_syrichta
ENSMUSG00000027905	Ddx20	84	76.190	ENSCAPG00000017427	DDX20	100	76.190	Cavia_aperea
ENSMUSG00000027905	Ddx20	99	80.097	ENSCPOG00000032340	DDX20	98	80.764	Cavia_porcellus
ENSMUSG00000027905	Ddx20	99	82.646	ENSCCAG00000026759	DDX20	99	82.577	Cebus_capucinus
ENSMUSG00000027905	Ddx20	99	82.061	ENSCATG00000039030	DDX20	98	82.861	Cercocebus_atys
ENSMUSG00000027905	Ddx20	99	80.485	ENSCLAG00000008874	DDX20	98	81.158	Chinchilla_lanigera
ENSMUSG00000027905	Ddx20	99	82.424	ENSCSAG00000001582	DDX20	98	83.107	Chlorocebus_sabaeus
ENSMUSG00000027905	Ddx20	63	85.928	ENSCHOG00000002610	DDX20	77	85.928	Choloepus_hoffmanni
ENSMUSG00000027905	Ddx20	94	63.252	ENSCPBG00000021256	DDX20	99	62.330	Chrysemys_picta_bellii
ENSMUSG00000027905	Ddx20	99	82.424	ENSCANG00000041894	DDX20	98	83.107	Colobus_angolensis_palliatus
ENSMUSG00000027905	Ddx20	99	91.299	ENSCGRG00001014132	Ddx20	99	91.299	Cricetulus_griseus_chok1gshd
ENSMUSG00000027905	Ddx20	87	90.139	ENSCGRG00000002300	Ddx20	100	90.139	Cricetulus_griseus_crigri
ENSMUSG00000027905	Ddx20	62	55.218	ENSCSEG00000018265	DDX20	62	55.218	Cynoglossus_semilaevis
ENSMUSG00000027905	Ddx20	95	49.939	ENSCVAG00000014821	ddx20	99	52.050	Cyprinodon_variegatus
ENSMUSG00000027905	Ddx20	70	62.134	ENSDARG00000061204	ddx20	96	51.177	Danio_rerio
ENSMUSG00000027905	Ddx20	99	83.190	ENSDNOG00000030865	DDX20	99	83.190	Dasypus_novemcinctus
ENSMUSG00000027905	Ddx20	98	84.606	ENSDORG00000011660	Ddx20	99	84.644	Dipodomys_ordii
ENSMUSG00000027905	Ddx20	66	95.506	ENSETEG00000002726	DDX20	65	93.407	Echinops_telfairi
ENSMUSG00000027905	Ddx20	98	83.887	ENSEASG00005005454	DDX20	99	83.804	Equus_asinus_asinus
ENSMUSG00000027905	Ddx20	98	83.887	ENSECAG00000013565	DDX20	99	83.804	Equus_caballus
ENSMUSG00000027905	Ddx20	95	48.916	ENSELUG00000010260	ddx20	99	48.795	Esox_lucius
ENSMUSG00000027905	Ddx20	98	84.010	ENSFCAG00000025736	DDX20	99	83.926	Felis_catus
ENSMUSG00000027905	Ddx20	87	57.143	ENSFALG00000000666	DDX20	99	57.377	Ficedula_albicollis
ENSMUSG00000027905	Ddx20	99	76.196	ENSFDAG00000001140	DDX20	98	76.450	Fukomys_damarensis
ENSMUSG00000027905	Ddx20	95	51.770	ENSFHEG00000019742	ddx20	99	51.415	Fundulus_heteroclitus
ENSMUSG00000027905	Ddx20	93	60.641	ENSGALG00000001504	DDX20	99	60.385	Gallus_gallus
ENSMUSG00000027905	Ddx20	95	52.618	ENSGAFG00000006427	ddx20	99	52.494	Gambusia_affinis
ENSMUSG00000027905	Ddx20	94	63.486	ENSGAGG00000000130	DDX20	99	63.613	Gopherus_agassizii
ENSMUSG00000027905	Ddx20	99	82.524	ENSGGOG00000015576	DDX20	99	82.699	Gorilla_gorilla
ENSMUSG00000027905	Ddx20	73	61.039	ENSHBUG00000007853	ddx20	73	60.940	Haplochromis_burtoni
ENSMUSG00000027905	Ddx20	99	80.340	ENSHGLG00000014848	DDX20	98	80.665	Heterocephalus_glaber_female
ENSMUSG00000027905	Ddx20	99	80.340	ENSHGLG00100003740	DDX20	98	80.665	Heterocephalus_glaber_male
ENSMUSG00000027905	Ddx20	95	51.557	ENSHCOG00000001915	ddx20	73	61.149	Hippocampus_comes
ENSMUSG00000027905	Ddx20	70	61.709	ENSIPUG00000004876	ddx20	69	61.709	Ictalurus_punctatus
ENSMUSG00000027905	Ddx20	98	83.887	ENSSTOG00000029089	DDX20	99	83.681	Ictidomys_tridecemlineatus
ENSMUSG00000027905	Ddx20	99	84.345	ENSJJAG00000011198	Ddx20	99	84.417	Jaculus_jaculus
ENSMUSG00000027905	Ddx20	75	58.400	ENSKMAG00000019022	ddx20	99	50.672	Kryptolebias_marmoratus
ENSMUSG00000027905	Ddx20	95	50.976	ENSLBEG00000019194	ddx20	97	50.549	Labrus_bergylta
ENSMUSG00000027905	Ddx20	95	55.990	ENSLACG00000018491	DDX20	99	57.568	Latimeria_chalumnae
ENSMUSG00000027905	Ddx20	95	54.167	ENSLOCG00000010372	ddx20	100	52.768	Lepisosteus_oculatus
ENSMUSG00000027905	Ddx20	98	79.310	ENSLAFG00000014646	DDX20	100	78.870	Loxodonta_africana
ENSMUSG00000027905	Ddx20	99	82.518	ENSMFAG00000031755	DDX20	98	83.107	Macaca_fascicularis
ENSMUSG00000027905	Ddx20	99	82.424	ENSMNEG00000005757	DDX20	98	83.107	Macaca_nemestrina
ENSMUSG00000027905	Ddx20	99	82.061	ENSMLEG00000005722	DDX20	98	82.861	Mandrillus_leucophaeus
ENSMUSG00000027905	Ddx20	95	51.023	ENSMAMG00000009654	ddx20	73	60.920	Mastacembelus_armatus
ENSMUSG00000027905	Ddx20	73	61.039	ENSMZEG00005027081	ddx20	73	60.940	Maylandia_zebra
ENSMUSG00000027905	Ddx20	92	60.288	ENSMGAG00000004624	DDX20	99	60.026	Meleagris_gallopavo
ENSMUSG00000027905	Ddx20	99	90.319	ENSMAUG00000010659	Ddx20	99	90.319	Mesocricetus_auratus
ENSMUSG00000027905	Ddx20	99	84.466	ENSMICG00000011509	DDX20	99	84.417	Microcebus_murinus
ENSMUSG00000027905	Ddx20	99	88.480	ENSMOCG00000012954	Ddx20	99	88.480	Microtus_ochrogaster
ENSMUSG00000027905	Ddx20	95	50.248	ENSMMOG00000013103	ddx20	99	50.368	Mola_mola
ENSMUSG00000027905	Ddx20	95	74.333	ENSMODG00000001311	DDX20	94	74.333	Monodelphis_domestica
ENSMUSG00000027905	Ddx20	95	49.408	ENSMALG00000010740	ddx20	82	61.395	Monopterus_albus
ENSMUSG00000027905	Ddx20	100	97.939	MGP_CAROLIEiJ_G0025474	Ddx20	100	97.939	Mus_caroli
ENSMUSG00000027905	Ddx20	99	95.823	MGP_PahariEiJ_G0026919	Ddx20	98	95.823	Mus_pahari
ENSMUSG00000027905	Ddx20	100	98.909	MGP_SPRETEiJ_G0026423	Ddx20	100	98.909	Mus_spretus
ENSMUSG00000027905	Ddx20	98	83.641	ENSMPUG00000004921	DDX20	99	83.558	Mustela_putorius_furo
ENSMUSG00000027905	Ddx20	84	79.654	ENSMLUG00000009676	DDX20	100	79.654	Myotis_lucifugus
ENSMUSG00000027905	Ddx20	99	85.194	ENSNGAG00000022953	Ddx20	99	85.276	Nannospalax_galili
ENSMUSG00000027905	Ddx20	95	52.689	ENSNBRG00000020244	ddx20	99	52.812	Neolamprologus_brichardi
ENSMUSG00000027905	Ddx20	99	83.252	ENSNLEG00000004040	DDX20	99	83.313	Nomascus_leucogenys
ENSMUSG00000027905	Ddx20	61	76.744	ENSMEUG00000013459	-	63	76.546	Notamacropus_eugenii
ENSMUSG00000027905	Ddx20	67	90.698	ENSOPRG00000004035	DDX20	84	89.773	Ochotona_princeps
ENSMUSG00000027905	Ddx20	72	62.500	ENSONIG00000012436	ddx20	99	53.535	Oreochromis_niloticus
ENSMUSG00000027905	Ddx20	71	74.232	ENSOANG00000003318	DDX20	91	74.068	Ornithorhynchus_anatinus
ENSMUSG00000027905	Ddx20	99	81.652	ENSOCUG00000025939	DDX20	99	82.699	Oryctolagus_cuniculus
ENSMUSG00000027905	Ddx20	95	52.000	ENSORLG00000008949	ddx20	99	51.894	Oryzias_latipes
ENSMUSG00000027905	Ddx20	95	52.393	ENSORLG00020003852	ddx20	99	51.894	Oryzias_latipes_hni
ENSMUSG00000027905	Ddx20	95	52.125	ENSORLG00015020167	ddx20	99	52.020	Oryzias_latipes_hsok
ENSMUSG00000027905	Ddx20	95	51.183	ENSOMEG00000013657	ddx20	99	51.621	Oryzias_melastigma
ENSMUSG00000027905	Ddx20	99	84.140	ENSOGAG00000010503	DDX20	99	84.333	Otolemur_garnettii
ENSMUSG00000027905	Ddx20	98	83.599	ENSOARG00000019651	DDX20	99	83.516	Ovis_aries
ENSMUSG00000027905	Ddx20	99	82.375	ENSPPAG00000031680	DDX20	99	82.454	Pan_paniscus
ENSMUSG00000027905	Ddx20	99	84.049	ENSPPRG00000022979	DDX20	99	84.049	Panthera_pardus
ENSMUSG00000027905	Ddx20	99	82.375	ENSPTRG00000001105	DDX20	99	82.454	Pan_troglodytes
ENSMUSG00000027905	Ddx20	99	82.182	ENSPANG00000017985	DDX20	98	82.984	Papio_anubis
ENSMUSG00000027905	Ddx20	67	63.309	ENSPKIG00000020161	ddx20	99	52.344	Paramormyrops_kingsleyae
ENSMUSG00000027905	Ddx20	88	60.490	ENSPSIG00000003636	DDX20	100	60.354	Pelodiscus_sinensis
ENSMUSG00000027905	Ddx20	95	51.733	ENSPMGG00000005966	ddx20	99	51.361	Periophthalmus_magnuspinnatus
ENSMUSG00000027905	Ddx20	99	91.411	ENSPEMG00000019595	Ddx20	99	91.411	Peromyscus_maniculatus_bairdii
ENSMUSG00000027905	Ddx20	99	71.584	ENSPCIG00000027721	DDX20	99	72.236	Phascolarctos_cinereus
ENSMUSG00000027905	Ddx20	95	52.239	ENSPFOG00000010540	ddx20	99	52.494	Poecilia_formosa
ENSMUSG00000027905	Ddx20	95	52.340	ENSPLAG00000009925	ddx20	99	52.593	Poecilia_latipinna
ENSMUSG00000027905	Ddx20	95	52.050	ENSPMEG00000005998	ddx20	99	52.304	Poecilia_mexicana
ENSMUSG00000027905	Ddx20	95	51.990	ENSPREG00000018837	ddx20	99	50.607	Poecilia_reticulata
ENSMUSG00000027905	Ddx20	99	83.010	ENSPPYG00000001026	DDX20	99	83.067	Pongo_abelii
ENSMUSG00000027905	Ddx20	99	83.495	ENSPCOG00000025185	DDX20	99	83.558	Propithecus_coquereli
ENSMUSG00000027905	Ddx20	99	82.403	ENSPVAG00000004664	DDX20	99	82.454	Pteropus_vampyrus
ENSMUSG00000027905	Ddx20	73	61.039	ENSPNYG00000014433	ddx20	72	61.039	Pundamilia_nyererei
ENSMUSG00000027905	Ddx20	72	59.866	ENSPNAG00000018148	ddx20	99	50.552	Pygocentrus_nattereri
ENSMUSG00000027905	Ddx20	99	92.467	ENSRNOG00000015274	Ddx20	99	92.866	Rattus_norvegicus
ENSMUSG00000027905	Ddx20	99	82.303	ENSRBIG00000030629	DDX20	98	82.984	Rhinopithecus_bieti
ENSMUSG00000027905	Ddx20	99	82.303	ENSRROG00000030608	DDX20	98	82.984	Rhinopithecus_roxellana
ENSMUSG00000027905	Ddx20	99	83.010	ENSSBOG00000024789	DDX20	99	82.945	Saimiri_boliviensis_boliviensis
ENSMUSG00000027905	Ddx20	84	71.121	ENSSHAG00000014518	DDX20	99	71.121	Sarcophilus_harrisii
ENSMUSG00000027905	Ddx20	95	53.114	ENSSFOG00015008354	ddx20	72	63.898	Scleropages_formosus
ENSMUSG00000027905	Ddx20	70	60.647	ENSSMAG00000007498	ddx20	67	62.651	Scophthalmus_maximus
ENSMUSG00000027905	Ddx20	95	52.559	ENSSDUG00000015980	ddx20	99	53.300	Seriola_dumerili
ENSMUSG00000027905	Ddx20	95	50.903	ENSSLDG00000000437	ddx20	67	60.956	Seriola_lalandi_dorsalis
ENSMUSG00000027905	Ddx20	88	70.401	ENSSARG00000013569	DDX20	88	70.401	Sorex_araneus
ENSMUSG00000027905	Ddx20	95	50.415	ENSSPAG00000020022	ddx20	81	61.211	Stegastes_partitus
ENSMUSG00000027905	Ddx20	98	83.047	ENSSSCG00000006783	DDX20	98	83.047	Sus_scrofa
ENSMUSG00000027905	Ddx20	81	64.042	ENSTGUG00000013660	DDX20	85	69.454	Taeniopygia_guttata
ENSMUSG00000027905	Ddx20	70	60.377	ENSTRUG00000023712	ddx20	71	60.647	Takifugu_rubripes
ENSMUSG00000027905	Ddx20	95	50.613	ENSTNIG00000019425	ddx20	99	50.123	Tetraodon_nigroviridis
ENSMUSG00000027905	Ddx20	84	85.027	ENSTTRG00000005131	DDX20	83	85.955	Tursiops_truncatus
ENSMUSG00000027905	Ddx20	98	80.443	ENSUAMG00000018924	DDX20	99	81.350	Ursus_americanus
ENSMUSG00000027905	Ddx20	88	82.507	ENSUMAG00000013897	DDX20	92	82.507	Ursus_maritimus
ENSMUSG00000027905	Ddx20	98	81.840	ENSVPAG00000010031	DDX20	99	81.763	Vicugna_pacos
ENSMUSG00000027905	Ddx20	99	82.746	ENSVVUG00000016236	DDX20	99	82.555	Vulpes_vulpes
ENSMUSG00000027905	Ddx20	94	57.033	ENSXETG00000013568	ddx20	100	55.752	Xenopus_tropicalis
ENSMUSG00000027905	Ddx20	95	51.856	ENSXCOG00000007952	ddx20	98	51.797	Xiphophorus_couchianus
ENSMUSG00000027905	Ddx20	95	51.985	ENSXMAG00000007573	ddx20	99	51.925	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	12007404.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000387	spliceosomal snRNP assembly	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	12007404.16153597.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0017053	transcriptional repressor complex	12007404.	IDA	Component
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030674	protein binding, bridging	12007404.	IDA	Function
GO:0032797	SMN complex	-	ISO	Component
GO:0034719	SMN-Sm protein complex	-	ISO	Component
GO:0042826	histone deacetylase binding	12007404.	IPI	Function
GO:0043065	positive regulation of apoptotic process	16153597.	IMP	Process
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0048477	oogenesis	18258677.	IMP	Process
GO:0050810	regulation of steroid biosynthetic process	18258677.	IMP	Process
GO:0070491	repressing transcription factor binding	-	ISO	Function
GO:0090571	RNA polymerase II transcription repressor complex	12007404.	IDA	Component