EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027935 (Gene tree)
Gene ID: 68328
Gene Symbol: Rab13
Alias: 0610007N03Rik|B230212B15Rik
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 12691 bases
Position: chr3:90213695-90226385
Accession: 1927232
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000070588	MMR_HSR1	PF01926.23	0.00016	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000107373	-	1415	-	ENSMUSP00000102996	121 (aa)	-	D3YUS4
ENSMUST00000198809	-	762	-	-	- (aa)	-	-
ENSMUST00000065418	-	1107	-	ENSMUSP00000070588	202 (aa)	-	Q9DD03

Gene Model

Click here to download ENSMUSG00000027935's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027935's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000027935	Rab13	86	48.315	ENSMUSG00000031202	Rab39b	84	48.315
ENSMUSG00000027935	Rab13	95	53.807	ENSMUSG00000020149	Rab1a	98	53.807
ENSMUSG00000027935	Rab13	83	37.126	ENSMUSG00000064147	Rab44	63	37.126
ENSMUSG00000027935	Rab13	87	42.781	ENSMUSG00000031104	Rab33a	79	42.781
ENSMUSG00000027935	Rab13	94	37.113	ENSMUSG00000079477	Rab7	92	43.333
ENSMUSG00000027935	Rab13	82	47.273	ENSMUSG00000077450	Rab11b	93	47.826
ENSMUSG00000027935	Rab13	80	38.509	ENSMUSG00000056515	Rab31	83	38.509
ENSMUSG00000027935	Rab13	80	40.373	ENSMUSG00000000711	Rab5b	75	40.373
ENSMUSG00000027935	Rab13	94	37.073	ENSMUSG00000002059	Rab34	97	37.056
ENSMUSG00000027935	Rab13	84	43.103	ENSMUSG00000027739	Rab33b	76	43.103
ENSMUSG00000027935	Rab13	97	41.463	ENSMUSG00000004771	Rab11a	91	48.227
ENSMUSG00000027935	Rab13	85	51.744	ENSMUSG00000023460	Rab12	71	51.744
ENSMUSG00000027935	Rab13	94	45.789	ENSMUSG00000022159	Rab2b	95	45.789
ENSMUSG00000027935	Rab13	84	47.337	ENSMUSG00000047187	Rab2a	80	47.337
ENSMUSG00000027935	Rab13	95	35.533	ENSMUSG00000027519	Rab22a	97	35.533
ENSMUSG00000027935	Rab13	78	43.038	ENSMUSG00000032549	Rab6b	76	43.038
ENSMUSG00000027935	Rab13	62	30.952	ENSMUSG00000025035	Arl3	66	30.952
ENSMUSG00000027935	Rab13	80	49.383	ENSMUSG00000030643	Rab30	95	55.882
ENSMUSG00000027935	Rab13	81	40.000	ENSMUSG00000079316	Rab9	83	40.000
ENSMUSG00000027935	Rab13	80	37.654	ENSMUSG00000027852	Nras	97	37.415
ENSMUSG00000027935	Rab13	79	40.123	ENSMUSG00000020175	Rab36	61	40.123
ENSMUSG00000027935	Rab13	81	39.394	ENSMUSG00000004768	Rab23	69	39.394
ENSMUSG00000027935	Rab13	95	36.979	ENSMUSG00000019173	Rab5c	89	36.979
ENSMUSG00000027935	Rab13	81	41.071	ENSMUSG00000043463	Rab9b	83	41.071
ENSMUSG00000027935	Rab13	95	41.919	ENSMUSG00000020732	Rab37	88	41.919
ENSMUSG00000027935	Rab13	58	31.405	ENSMUSG00000098207	Arl14	60	31.405
ENSMUSG00000027935	Rab13	84	54.706	ENSMUSG00000029518	Rab35	84	54.706
ENSMUSG00000027935	Rab13	94	41.361	ENSMUSG00000073639	Rab18	90	41.361
ENSMUSG00000027935	Rab13	62	30.000	ENSMUSG00000038671	Arfrp1	67	30.000
ENSMUSG00000027935	Rab13	95	53.061	ENSMUSG00000024870	Rab1b	98	53.061
ENSMUSG00000027935	Rab13	83	42.262	ENSMUSG00000008601	Rab25	79	42.262
ENSMUSG00000027935	Rab13	78	44.304	ENSMUSG00000030704	Rab6a	76	44.304
ENSMUSG00000027935	Rab13	96	39.409	ENSMUSG00000026878	Rab14	94	39.409
ENSMUSG00000027935	Rab13	80	39.506	ENSMUSG00000030265	Kras	98	36.598
ENSMUSG00000027935	Rab13	76	32.468	ENSMUSG00000028945	Rheb	83	32.468
ENSMUSG00000027935	Rab13	67	30.147	ENSMUSG00000020440	Arf5	72	30.147
ENSMUSG00000027935	Rab13	57	30.508	ENSMUSG00000034936	Arl4d	58	30.508
ENSMUSG00000027935	Rab13	86	43.103	ENSMUSG00000017831	Rab5a	80	43.103
ENSMUSG00000027935	Rab13	80	36.196	ENSMUSG00000032470	Mras	93	32.308
ENSMUSG00000027935	Rab13	84	54.118	ENSMUSG00000021062	Rab15	80	54.118
ENSMUSG00000027935	Rab13	80	38.889	ENSMUSG00000025499	Hras	96	34.010
ENSMUSG00000027935	Rab13	78	30.818	ENSMUSG00000022621	Rabl2	69	30.818
ENSMUSG00000027935	Rab13	80	30.247	ENSMUSG00000083649	Rasl2-9	74	30.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027935	Rab13	100	91.626	ENSG00000143545	RAB13	100	91.626	Homo_sapiens
ENSMUSG00000027935	Rab13	90	80.110	ENSACIG00000008584	rab13	87	80.110	Amphilophus_citrinellus
ENSMUSG00000027935	Rab13	100	91.626	ENSANAG00000030247	-	100	91.626	Aotus_nancymaae
ENSMUSG00000027935	Rab13	99	78.607	ENSAMXG00000030712	rab13	99	78.607	Astyanax_mexicanus
ENSMUSG00000027935	Rab13	100	90.640	ENSBTAG00000017604	RAB13	100	90.640	Bos_taurus
ENSMUSG00000027935	Rab13	80	46.012	WBGene00019317	K02E10.1	75	46.012	Caenorhabditis_elegans
ENSMUSG00000027935	Rab13	94	93.122	ENSCJAG00000009933	-	100	91.133	Callithrix_jacchus
ENSMUSG00000027935	Rab13	100	90.640	ENSCHIG00000022271	-	100	90.640	Capra_hircus
ENSMUSG00000027935	Rab13	99	87.129	ENSCPOG00000011491	-	99	87.129	Cavia_porcellus
ENSMUSG00000027935	Rab13	100	91.626	ENSCCAG00000028502	-	100	91.626	Cebus_capucinus
ENSMUSG00000027935	Rab13	100	91.626	ENSCATG00000041779	-	100	91.626	Cercocebus_atys
ENSMUSG00000027935	Rab13	100	86.700	ENSCLAG00000006603	-	100	86.700	Chinchilla_lanigera
ENSMUSG00000027935	Rab13	100	91.626	ENSCANG00000036573	-	100	91.626	Colobus_angolensis_palliatus
ENSMUSG00000027935	Rab13	100	91.626	ENSCGRG00001021505	Rab13	100	91.626	Cricetulus_griseus_chok1gshd
ENSMUSG00000027935	Rab13	100	91.626	ENSCGRG00000012126	Rab13	100	91.626	Cricetulus_griseus_crigri
ENSMUSG00000027935	Rab13	99	74.757	ENSCSEG00000002358	rab13	99	74.757	Cynoglossus_semilaevis
ENSMUSG00000027935	Rab13	99	77.184	ENSDARG00000034771	rab13	99	77.184	Danio_rerio
ENSMUSG00000027935	Rab13	100	89.655	ENSDORG00000001591	Rab13	100	89.655	Dipodomys_ordii
ENSMUSG00000027935	Rab13	100	90.640	ENSEASG00005000683	-	100	90.640	Equus_asinus_asinus
ENSMUSG00000027935	Rab13	100	90.640	ENSECAG00000016551	RAB13	100	90.640	Equus_caballus
ENSMUSG00000027935	Rab13	99	86.634	ENSEEUG00000001233	-	99	86.634	Erinaceus_europaeus
ENSMUSG00000027935	Rab13	99	76.098	ENSELUG00000012801	rab13	99	76.098	Esox_lucius
ENSMUSG00000027935	Rab13	100	86.700	ENSFCAG00000045269	-	100	86.700	Felis_catus
ENSMUSG00000027935	Rab13	65	96.212	ENSFDAG00000014469	-	100	96.212	Fukomys_damarensis
ENSMUSG00000027935	Rab13	86	83.815	ENSFHEG00000021221	rab13	95	83.815	Fundulus_heteroclitus
ENSMUSG00000027935	Rab13	99	74.757	ENSGACG00000011925	rab13	99	75.124	Gasterosteus_aculeatus
ENSMUSG00000027935	Rab13	86	90.751	ENSGAGG00000000742	-	86	90.751	Gopherus_agassizii
ENSMUSG00000027935	Rab13	100	91.626	ENSGGOG00000023693	RAB13	100	91.626	Gorilla_gorilla
ENSMUSG00000027935	Rab13	100	87.129	ENSHGLG00000008749	RAB13	100	87.129	Heterocephalus_glaber_female
ENSMUSG00000027935	Rab13	100	87.129	ENSHGLG00100013608	RAB13	100	87.129	Heterocephalus_glaber_male
ENSMUSG00000027935	Rab13	99	73.134	ENSHCOG00000007440	rab13	95	84.393	Hippocampus_comes
ENSMUSG00000027935	Rab13	99	74.879	ENSIPUG00000003199	rab13	99	74.879	Ictalurus_punctatus
ENSMUSG00000027935	Rab13	100	90.640	ENSSTOG00000011222	-	100	90.640	Ictidomys_tridecemlineatus
ENSMUSG00000027935	Rab13	100	87.192	ENSJJAG00000010575	Rab13	100	87.192	Jaculus_jaculus
ENSMUSG00000027935	Rab13	99	73.786	ENSKMAG00000001908	rab13	99	73.786	Kryptolebias_marmoratus
ENSMUSG00000027935	Rab13	99	74.757	ENSLBEG00000026779	rab13	99	74.757	Labrus_bergylta
ENSMUSG00000027935	Rab13	91	75.000	ENSLACG00000008103	-	99	75.000	Latimeria_chalumnae
ENSMUSG00000027935	Rab13	100	91.626	ENSMFAG00000041018	RAB13	100	91.626	Macaca_fascicularis
ENSMUSG00000027935	Rab13	100	91.626	ENSMNEG00000028951	-	100	91.626	Macaca_nemestrina
ENSMUSG00000027935	Rab13	100	91.626	ENSMLEG00000042247	-	100	91.626	Mandrillus_leucophaeus
ENSMUSG00000027935	Rab13	99	73.786	ENSMAMG00000014602	rab13	99	73.786	Mastacembelus_armatus
ENSMUSG00000027935	Rab13	100	91.133	ENSMAUG00000015713	Rab13	100	91.133	Mesocricetus_auratus
ENSMUSG00000027935	Rab13	100	90.099	ENSMICG00000010340	-	100	90.099	Microcebus_murinus
ENSMUSG00000027935	Rab13	100	92.611	ENSMOCG00000021448	Rab13	100	92.611	Microtus_ochrogaster
ENSMUSG00000027935	Rab13	99	87.500	ENSMODG00000017295	-	84	87.500	Monodelphis_domestica
ENSMUSG00000027935	Rab13	100	98.522	MGP_CAROLIEiJ_G0025227	Rab13	100	98.522	Mus_caroli
ENSMUSG00000027935	Rab13	99	98.507	MGP_PahariEiJ_G0026671	Rab13	99	98.507	Mus_pahari
ENSMUSG00000027935	Rab13	100	92.079	ENSNGAG00000010309	Rab13	100	92.079	Nannospalax_galili
ENSMUSG00000027935	Rab13	99	74.129	ENSNBRG00000004124	rab13	99	74.129	Neolamprologus_brichardi
ENSMUSG00000027935	Rab13	100	91.626	ENSNLEG00000028944	-	100	91.626	Nomascus_leucogenys
ENSMUSG00000027935	Rab13	100	87.685	ENSMEUG00000009667	-	100	87.685	Notamacropus_eugenii
ENSMUSG00000027935	Rab13	63	97.638	ENSODEG00000012634	-	100	97.638	Octodon_degus
ENSMUSG00000027935	Rab13	100	86.700	ENSODEG00000010443	-	100	86.700	Octodon_degus
ENSMUSG00000027935	Rab13	99	75.124	ENSONIG00000006340	rab13	99	75.124	Oreochromis_niloticus
ENSMUSG00000027935	Rab13	88	94.382	ENSOCUG00000006286	-	100	94.382	Oryctolagus_cuniculus
ENSMUSG00000027935	Rab13	99	74.757	ENSOMEG00000008210	rab13	99	74.757	Oryzias_melastigma
ENSMUSG00000027935	Rab13	99	88.060	ENSOGAG00000016969	-	99	88.060	Otolemur_garnettii
ENSMUSG00000027935	Rab13	100	91.626	ENSPPAG00000028435	-	100	91.626	Pan_paniscus
ENSMUSG00000027935	Rab13	100	86.700	ENSPPRG00000008865	-	100	86.700	Panthera_pardus
ENSMUSG00000027935	Rab13	100	91.626	ENSPTRG00000001370	RAB13	100	91.626	Pan_troglodytes
ENSMUSG00000027935	Rab13	100	91.626	ENSPANG00000004479	-	100	91.626	Papio_anubis
ENSMUSG00000027935	Rab13	99	74.510	ENSPMGG00000007680	rab13	99	74.510	Periophthalmus_magnuspinnatus
ENSMUSG00000027935	Rab13	53	99.074	ENSPEMG00000017353	-	81	99.074	Peromyscus_maniculatus_bairdii
ENSMUSG00000027935	Rab13	100	88.177	ENSPCIG00000029350	-	100	88.177	Phascolarctos_cinereus
ENSMUSG00000027935	Rab13	86	82.081	ENSPLAG00000005832	RAB13	93	82.081	Poecilia_latipinna
ENSMUSG00000027935	Rab13	93	77.660	ENSPREG00000017567	rab13	99	72.330	Poecilia_reticulata
ENSMUSG00000027935	Rab13	100	91.626	ENSPPYG00000000790	-	100	91.626	Pongo_abelii
ENSMUSG00000027935	Rab13	100	91.089	ENSPCOG00000012189	-	100	91.089	Propithecus_coquereli
ENSMUSG00000027935	Rab13	100	90.099	ENSPVAG00000011095	-	100	90.099	Pteropus_vampyrus
ENSMUSG00000027935	Rab13	86	84.393	ENSPNAG00000004189	rab13	92	84.393	Pygocentrus_nattereri
ENSMUSG00000027935	Rab13	100	95.074	ENSRNOG00000016733	Rab13	100	95.074	Rattus_norvegicus
ENSMUSG00000027935	Rab13	100	91.626	ENSRBIG00000008552	-	100	91.626	Rhinopithecus_bieti
ENSMUSG00000027935	Rab13	100	91.626	ENSRROG00000036885	-	100	91.626	Rhinopithecus_roxellana
ENSMUSG00000027935	Rab13	100	91.584	ENSSBOG00000020342	-	100	91.584	Saimiri_boliviensis_boliviensis
ENSMUSG00000027935	Rab13	100	87.192	ENSSHAG00000011866	-	100	87.192	Sarcophilus_harrisii
ENSMUSG00000027935	Rab13	100	91.133	ENSSSCG00000006564	-	100	91.133	Sus_scrofa
ENSMUSG00000027935	Rab13	99	76.119	ENSTRUG00000024177	rab13	99	76.119	Takifugu_rubripes
ENSMUSG00000027935	Rab13	100	91.133	ENSTBEG00000012734	-	100	91.133	Tupaia_belangeri
ENSMUSG00000027935	Rab13	100	91.626	ENSTTRG00000011183	-	100	91.626	Tursiops_truncatus
ENSMUSG00000027935	Rab13	71	78.322	ENSXETG00000020729	rab13	98	75.472	Xenopus_tropicalis
ENSMUSG00000027935	Rab13	86	81.503	ENSXCOG00000019533	rab13	93	81.503	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	11025210.	TAS	Function
GO:0005525	GTP binding	-	ISO	Function
GO:0005768	endosome	-	IEA	Component
GO:0005794	Golgi apparatus	11042173.	IDA	Component
GO:0005802	trans-Golgi network	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005911	cell-cell junction	11025210.	IDA	Component
GO:0005923	bicellular tight junction	11025210.	IDA	Component
GO:0005923	bicellular tight junction	-	ISO	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006886	intracellular protein transport	11042173.	TAS	Process
GO:0010737	protein kinase A signaling	-	ISO	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016197	endosomal transport	-	ISO	Process
GO:0016328	lateral plasma membrane	-	ISO	Component
GO:0019897	extrinsic component of plasma membrane	11025210.	TAS	Component
GO:0030027	lamellipodium	21543326.	IDA	Component
GO:0030054	cell junction	-	IEA	Component
GO:0030139	endocytic vesicle	21543326.	IDA	Component
GO:0030139	endocytic vesicle	-	ISO	Component
GO:0030866	cortical actin cytoskeleton organization	-	ISO	Process
GO:0031175	neuron projection development	-	ISO	Process
GO:0031410	cytoplasmic vesicle	-	ISO	Component
GO:0031410	cytoplasmic vesicle	11025210.	TAS	Component
GO:0032456	endocytic recycling	15528189.	IMP	Process
GO:0032456	endocytic recycling	-	ISO	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0032593	insulin-responsive compartment	-	ISO	Component
GO:0032869	cellular response to insulin stimulus	-	ISO	Process
GO:0034236	protein kinase A catalytic subunit binding	-	ISO	Function
GO:0035767	endothelial cell chemotaxis	21543326.	IMP	Process
GO:0042995	cell projection	-	IEA	Component
GO:0043005	neuron projection	-	ISO	Component
GO:0055037	recycling endosome	-	ISO	Component
GO:0070830	bicellular tight junction assembly	-	ISO	Process
GO:0072659	protein localization to plasma membrane	-	ISO	Process
GO:0097368	establishment of Sertoli cell barrier	-	ISO	Process
GO:1902463	protein localization to cell leading edge	21543326.	IMP	Process