EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027940 (Gene tree)
Gene ID: 59069
Gene Symbol: Tpm3
Alias: Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm|skalphaTM.2
Full Name: tropomyosin 3%2C gamma
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 28254
Position: chr3: 90072649-90100902
Accession: 1890149
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000127955	-	341	-	ENSMUSP00000115565	9 (aa)	-	A0A1C7ZMY7
ENSMUST00000149734	-	512	-	-	- (aa)	-	-
ENSMUST00000029549	-	2230	XM_006501835	ENSMUSP00000029549	248 (aa)	XP_006501898	P21107
ENSMUST00000121503	-	1139	-	ENSMUSP00000113578	284 (aa)	-	A0A0R4J1P2
ENSMUST00000118566	-	2190	XM_006501838	ENSMUSP00000113056	248 (aa)	XP_006501901	E9Q7Q3
ENSMUST00000151798	-	376	-	-	- (aa)	-	-
ENSMUST00000133361	-	357	-	-	- (aa)	-	-
ENSMUST00000131354	-	2374	-	-	- (aa)	-	-
ENSMUST00000119570	-	2233	-	ENSMUSP00000113978	285 (aa)	-	E9Q5J9
ENSMUST00000147430	-	655	-	-	- (aa)	-	-
ENSMUST00000149115	-	302	-	-	- (aa)	-	-
ENSMUST00000136125	-	509	-	-	- (aa)	-	-
ENSMUST00000119158	-	1090	XM_006501836	ENSMUSP00000113219	247 (aa)	XP_006501899	D3Z6I8
ENSMUST00000149432	-	459	-	ENSMUSP00000114229	71 (aa)	-	D3YVR0
ENSMUST00000133281	-	427	-	-	- (aa)	-	-
ENSMUST00000143281	-	692	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027940's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04260	Cardiac muscle contraction	KEGG
mmu04261	Adrenergic signaling in cardiomyocytes	KEGG
mmu05200	Pathways in cancer	KEGG
mmu05216	Thyroid cancer	KEGG
mmu05410	Hypertrophic cardiomyopathy (HCM)	KEGG
mmu05414	Dilated cardiomyopathy (DCM)	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027940's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027940	Tpm3	99	67.143	WBGene00002978	lev-11	99	61.039	Caenorhabditis_elegans
ENSMUSG00000027940	Tpm3	99	67.143	FBgn0003721	Tm1	98	56.835	Drosophila_melanogaster

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001725	stress fiber	16236705.	ISO	Component
GO:0002102	podosome	16765662.	IDA	Component
GO:0003779	actin binding	-	IEA	Function
GO:0005515	protein binding	23055941.	IPI	Function
GO:0005737	cytoplasm	16765662.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005884	actin filament	21873635.	IBA	Component
GO:0007015	actin filament organization	21873635.	IBA	Process
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0030426	growth cone	15888546.	IDA	Component
GO:0030863	cortical cytoskeleton	9473354.16765662.	IDA	Component
GO:0032154	cleavage furrow	9473354.	IDA	Component
GO:0043005	neuron projection	15888546.	IDA	Component
GO:0051015	actin filament binding	21873635.	IBA	Function
GO:0051015	actin filament binding	16765662.	IDA	Function