EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027968 (Gene tree)
Gene ID: 28036
Gene Symbol: Larp7
Alias: C330027G06Rik|D3Wsu161e
Full Name: La ribonucleoprotein domain family%2C member 7
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 16636 bases
Position: chr3:127536714-127553349
Accession: 107634
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000029588	RRM_1	PF00076.22	3e-18	1	1
ENSMUSP00000029588	RRM_3	PF08777.11	4.3e-29	1	1
ENSMUSP00000029588	La	PF05383.17	1.3e-21	1	1
ENSMUSP00000143331	La	PF05383.17	4.3e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000195976	-	1391	-	-	- (aa)	-	-
ENSMUST00000197698	-	733	-	-	- (aa)	-	-
ENSMUST00000197668	-	411	-	ENSMUSP00000143331	80 (aa)	-	A0A0G2JFW4
ENSMUST00000029588	-	2121	-	ENSMUSP00000029588	570 (aa)	-	Q05CL8

Gene Model

Click here to download ENSMUSG00000027968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000027968	Larp7	64	47.059	ENSMUSG00000068882	Ssb	84	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027968	Larp7	96	81.900	ENSG00000174720	LARP7	95	81.802	Homo_sapiens
ENSMUSG00000027968	Larp7	100	82.558	ENSAMEG00000015642	LARP7	95	80.866	Ailuropoda_melanoleuca
ENSMUSG00000027968	Larp7	91	61.644	ENSACIG00000023850	larp7	94	51.885	Amphilophus_citrinellus
ENSMUSG00000027968	Larp7	91	70.270	ENSATEG00000016238	larp7	95	56.835	Anabas_testudineus
ENSMUSG00000027968	Larp7	73	96.552	ENSAPLG00000012887	LARP7	94	67.426	Anas_platyrhynchos
ENSMUSG00000027968	Larp7	73	94.828	ENSACAG00000010662	LARP7	91	67.084	Anolis_carolinensis
ENSMUSG00000027968	Larp7	96	81.216	ENSANAG00000031139	-	95	81.115	Aotus_nancymaae
ENSMUSG00000027968	Larp7	74	89.831	ENSANAG00000022318	-	94	65.704	Aotus_nancymaae
ENSMUSG00000027968	Larp7	95	61.842	ENSACLG00000023184	larp7	95	53.913	Astatotilapia_calliptera
ENSMUSG00000027968	Larp7	84	77.612	ENSAMXG00000002549	larp7	94	52.688	Astyanax_mexicanus
ENSMUSG00000027968	Larp7	96	80.431	ENSBTAG00000009632	LARP7	93	80.505	Bos_taurus
ENSMUSG00000027968	Larp7	96	82.014	ENSCJAG00000003711	LARP7	95	81.917	Callithrix_jacchus
ENSMUSG00000027968	Larp7	96	79.464	ENSCAFG00000011715	LARP7	95	79.749	Canis_familiaris
ENSMUSG00000027968	Larp7	96	80.431	ENSCAFG00020017225	LARP7	95	80.325	Canis_lupus_dingo
ENSMUSG00000027968	Larp7	100	73.494	ENSCHIG00000013971	-	86	84.163	Capra_hircus
ENSMUSG00000027968	Larp7	96	81.115	ENSCHIG00000014163	-	95	81.013	Capra_hircus
ENSMUSG00000027968	Larp7	96	73.723	ENSTSYG00000035188	-	97	73.309	Carlito_syrichta
ENSMUSG00000027968	Larp7	74	98.305	ENSTSYG00000006769	-	95	81.818	Carlito_syrichta
ENSMUSG00000027968	Larp7	96	73.588	ENSCAPG00000009328	LARP7	95	73.077	Cavia_aperea
ENSMUSG00000027968	Larp7	96	82.149	ENSCPOG00000011830	LARP7	95	81.868	Cavia_porcellus
ENSMUSG00000027968	Larp7	96	74.954	ENSCCAG00000023563	-	100	74.954	Cebus_capucinus
ENSMUSG00000027968	Larp7	96	82.648	ENSCCAG00000026787	-	95	82.554	Cebus_capucinus
ENSMUSG00000027968	Larp7	96	81.867	ENSCATG00000043535	LARP7	95	81.769	Cercocebus_atys
ENSMUSG00000027968	Larp7	96	84.153	ENSCLAG00000005894	LARP7	95	84.066	Chinchilla_lanigera
ENSMUSG00000027968	Larp7	96	82.047	ENSCSAG00000003810	LARP7	95	81.949	Chlorocebus_sabaeus
ENSMUSG00000027968	Larp7	100	82.143	ENSCHOG00000002379	-	95	79.710	Choloepus_hoffmanni
ENSMUSG00000027968	Larp7	94	70.295	ENSCHOG00000008967	-	100	70.111	Choloepus_hoffmanni
ENSMUSG00000027968	Larp7	73	96.552	ENSCPBG00000004919	LARP7	96	70.141	Chrysemys_picta_bellii
ENSMUSG00000027968	Larp7	78	40.323	ENSCING00000021685	-	74	37.107	Ciona_intestinalis
ENSMUSG00000027968	Larp7	96	82.079	ENSCANG00000031482	LARP7	94	81.982	Colobus_angolensis_palliatus
ENSMUSG00000027968	Larp7	100	96.296	ENSCGRG00001025050	-	100	91.274	Cricetulus_griseus_chok1gshd
ENSMUSG00000027968	Larp7	99	86.250	ENSCGRG00001012747	-	99	80.925	Cricetulus_griseus_chok1gshd
ENSMUSG00000027968	Larp7	99	86.250	ENSCGRG00000007642	-	99	82.000	Cricetulus_griseus_crigri
ENSMUSG00000027968	Larp7	100	96.296	ENSCGRG00000001141	-	100	83.607	Cricetulus_griseus_crigri
ENSMUSG00000027968	Larp7	91	67.568	ENSCSEG00000009088	larp7	95	53.358	Cynoglossus_semilaevis
ENSMUSG00000027968	Larp7	99	59.494	ENSCVAG00000016852	larp7	78	73.333	Cyprinodon_variegatus
ENSMUSG00000027968	Larp7	98	53.464	ENSDARG00000017315	larp7	93	51.068	Danio_rerio
ENSMUSG00000027968	Larp7	100	81.176	ENSDNOG00000013761	LARP7	95	80.790	Dasypus_novemcinctus
ENSMUSG00000027968	Larp7	96	84.000	ENSDORG00000008896	-	95	82.671	Dipodomys_ordii
ENSMUSG00000027968	Larp7	100	77.907	ENSETEG00000011692	LARP7	95	77.717	Echinops_telfairi
ENSMUSG00000027968	Larp7	100	82.558	ENSEASG00005005592	LARP7	95	81.949	Equus_asinus_asinus
ENSMUSG00000027968	Larp7	100	82.558	ENSECAG00000000834	LARP7	95	81.949	Equus_caballus
ENSMUSG00000027968	Larp7	74	98.305	ENSEEUG00000012824	LARP7	95	79.159	Erinaceus_europaeus
ENSMUSG00000027968	Larp7	74	77.966	ENSELUG00000015341	larp7	87	74.586	Esox_lucius
ENSMUSG00000027968	Larp7	96	81.475	ENSFCAG00000031966	LARP7	95	81.374	Felis_catus
ENSMUSG00000027968	Larp7	100	75.294	ENSFALG00000000972	LARP7	92	70.053	Ficedula_albicollis
ENSMUSG00000027968	Larp7	100	85.366	ENSFDAG00000014048	-	95	82.450	Fukomys_damarensis
ENSMUSG00000027968	Larp7	100	74.611	ENSFDAG00000011855	-	95	75.407	Fukomys_damarensis
ENSMUSG00000027968	Larp7	100	75.294	ENSGALG00000012048	LARP7	94	67.021	Gallus_gallus
ENSMUSG00000027968	Larp7	88	70.423	ENSGACG00000019618	larp7	79	70.556	Gasterosteus_aculeatus
ENSMUSG00000027968	Larp7	99	82.927	ENSGAGG00000024520	LARP7	95	69.406	Gopherus_agassizii
ENSMUSG00000027968	Larp7	96	81.900	ENSGGOG00000023567	-	95	81.802	Gorilla_gorilla
ENSMUSG00000027968	Larp7	88	78.543	ENSGGOG00000006438	-	97	78.543	Gorilla_gorilla
ENSMUSG00000027968	Larp7	95	61.842	ENSHBUG00000019223	larp7	95	54.626	Haplochromis_burtoni
ENSMUSG00000027968	Larp7	100	85.366	ENSHGLG00000002716	LARP7	95	80.505	Heterocephalus_glaber_female
ENSMUSG00000027968	Larp7	100	85.366	ENSHGLG00100000332	LARP7	95	80.505	Heterocephalus_glaber_male
ENSMUSG00000027968	Larp7	84	71.642	ENSIPUG00000019886	larp7	94	52.083	Ictalurus_punctatus
ENSMUSG00000027968	Larp7	100	83.333	ENSSTOG00000011789	LARP7	100	81.756	Ictidomys_tridecemlineatus
ENSMUSG00000027968	Larp7	100	85.366	ENSJJAG00000000257	-	100	83.709	Jaculus_jaculus
ENSMUSG00000027968	Larp7	98	59.036	ENSKMAG00000005057	larp7	95	51.064	Kryptolebias_marmoratus
ENSMUSG00000027968	Larp7	91	64.865	ENSLBEG00000018789	-	78	70.391	Labrus_bergylta
ENSMUSG00000027968	Larp7	98	58.744	ENSLACG00000013744	LARP7	95	58.304	Latimeria_chalumnae
ENSMUSG00000027968	Larp7	74	77.966	ENSLOCG00000011608	larp7	95	48.705	Lepisosteus_oculatus
ENSMUSG00000027968	Larp7	100	82.558	ENSLAFG00000015769	LARP7	95	83.122	Loxodonta_africana
ENSMUSG00000027968	Larp7	96	81.867	ENSMFAG00000036506	LARP7	95	81.769	Macaca_fascicularis
ENSMUSG00000027968	Larp7	96	81.867	ENSMMUG00000017911	LARP7	95	81.769	Macaca_mulatta
ENSMUSG00000027968	Larp7	96	82.047	ENSMNEG00000034758	LARP7	100	80.396	Macaca_nemestrina
ENSMUSG00000027968	Larp7	96	82.047	ENSMLEG00000026154	LARP7	95	81.949	Mandrillus_leucophaeus
ENSMUSG00000027968	Larp7	95	61.842	ENSMZEG00005002084	larp7	95	53.913	Maylandia_zebra
ENSMUSG00000027968	Larp7	100	75.294	ENSMGAG00000010947	LARP7	95	69.691	Meleagris_gallopavo
ENSMUSG00000027968	Larp7	100	85.185	ENSMAUG00000005625	-	100	74.611	Mesocricetus_auratus
ENSMUSG00000027968	Larp7	96	82.406	ENSMICG00000031035	LARP7	95	82.491	Microcebus_murinus
ENSMUSG00000027968	Larp7	90	89.062	ENSMOCG00000015761	-	100	89.062	Microtus_ochrogaster
ENSMUSG00000027968	Larp7	100	97.531	ENSMOCG00000012519	-	100	91.115	Microtus_ochrogaster
ENSMUSG00000027968	Larp7	74	72.881	ENSMMOG00000011816	larp7	73	69.832	Mola_mola
ENSMUSG00000027968	Larp7	100	82.558	ENSMODG00000005669	LARP7	95	71.836	Monodelphis_domestica
ENSMUSG00000027968	Larp7	83	72.727	ENSMALG00000009893	larp7	78	75.000	Monopterus_albus
ENSMUSG00000027968	Larp7	100	98.765	MGP_CAROLIEiJ_G0025613	-	100	98.601	Mus_caroli
ENSMUSG00000027968	Larp7	100	97.552	MGP_PahariEiJ_G0027060	-	100	97.552	Mus_pahari
ENSMUSG00000027968	Larp7	100	98.604	MGP_SPRETEiJ_G0026566	Larp7	100	98.604	Mus_spretus
ENSMUSG00000027968	Larp7	95	77.798	ENSMPUG00000018052	-	100	78.349	Mustela_putorius_furo
ENSMUSG00000027968	Larp7	96	80.969	ENSMPUG00000008331	-	95	80.866	Mustela_putorius_furo
ENSMUSG00000027968	Larp7	87	74.653	ENSMLUG00000027214	LARP7	100	74.653	Myotis_lucifugus
ENSMUSG00000027968	Larp7	100	93.902	ENSNGAG00000007368	-	100	82.272	Nannospalax_galili
ENSMUSG00000027968	Larp7	74	66.102	ENSNBRG00000007968	larp7	72	73.743	Neolamprologus_brichardi
ENSMUSG00000027968	Larp7	96	82.226	ENSNLEG00000016354	LARP7	94	82.130	Nomascus_leucogenys
ENSMUSG00000027968	Larp7	88	70.841	ENSMEUG00000004739	LARP7	100	70.841	Notamacropus_eugenii
ENSMUSG00000027968	Larp7	86	85.714	ENSOPRG00000009594	-	83	85.714	Ochotona_princeps
ENSMUSG00000027968	Larp7	99	84.810	ENSODEG00000011121	LARP7	93	79.238	Octodon_degus
ENSMUSG00000027968	Larp7	96	54.775	ENSONIG00000008763	larp7	95	53.565	Oreochromis_niloticus
ENSMUSG00000027968	Larp7	100	76.744	ENSOANG00000009298	LARP7	94	72.872	Ornithorhynchus_anatinus
ENSMUSG00000027968	Larp7	100	83.529	ENSOCUG00000007073	LARP7	95	78.919	Oryctolagus_cuniculus
ENSMUSG00000027968	Larp7	74	72.881	ENSORLG00000004978	larp7	94	51.246	Oryzias_latipes
ENSMUSG00000027968	Larp7	74	72.881	ENSORLG00020013825	larp7	94	51.423	Oryzias_latipes_hni
ENSMUSG00000027968	Larp7	74	72.881	ENSORLG00015011435	larp7	75	71.667	Oryzias_latipes_hsok
ENSMUSG00000027968	Larp7	79	74.603	ENSOMEG00000006920	larp7	94	50.615	Oryzias_melastigma
ENSMUSG00000027968	Larp7	96	83.005	ENSOGAG00000001643	LARP7	95	82.914	Otolemur_garnettii
ENSMUSG00000027968	Larp7	96	81.038	ENSOARG00000001809	LARP7	95	80.935	Ovis_aries
ENSMUSG00000027968	Larp7	96	81.541	ENSPPAG00000038420	LARP7	94	81.441	Pan_paniscus
ENSMUSG00000027968	Larp7	96	81.329	ENSPPRG00000023256	LARP7	95	81.227	Panthera_pardus
ENSMUSG00000027968	Larp7	92	80.488	ENSPTIG00000021146	LARP7	92	80.377	Panthera_tigris_altaica
ENSMUSG00000027968	Larp7	96	81.900	ENSPTRG00000016380	LARP7	95	81.802	Pan_troglodytes
ENSMUSG00000027968	Larp7	96	82.290	ENSPANG00000006701	LARP7	94	82.194	Papio_anubis
ENSMUSG00000027968	Larp7	89	70.423	ENSPKIG00000023484	larp7	94	56.553	Paramormyrops_kingsleyae
ENSMUSG00000027968	Larp7	99	84.146	ENSPSIG00000014419	LARP7	93	68.402	Pelodiscus_sinensis
ENSMUSG00000027968	Larp7	70	67.857	ENSPMGG00000019887	larp7	82	72.067	Periophthalmus_magnuspinnatus
ENSMUSG00000027968	Larp7	100	95.062	ENSPEMG00000013978	-	100	89.267	Peromyscus_maniculatus_bairdii
ENSMUSG00000027968	Larp7	79	57.143	ENSPMAG00000005362	larp7	92	36.823	Petromyzon_marinus
ENSMUSG00000027968	Larp7	99	84.337	ENSPCIG00000020284	LARP7	98	79.487	Phascolarctos_cinereus
ENSMUSG00000027968	Larp7	96	82.258	ENSPPYG00000015010	LARP7	95	82.162	Pongo_abelii
ENSMUSG00000027968	Larp7	59	100.000	ENSPCAG00000003373	-	67	100.000	Procavia_capensis
ENSMUSG00000027968	Larp7	74	98.305	ENSPCOG00000023946	LARP7	94	72.553	Propithecus_coquereli
ENSMUSG00000027968	Larp7	100	86.905	ENSPVAG00000000282	LARP7	95	79.317	Pteropus_vampyrus
ENSMUSG00000027968	Larp7	95	61.842	ENSPNYG00000023801	larp7	72	73.184	Pundamilia_nyererei
ENSMUSG00000027968	Larp7	96	52.941	ENSPNAG00000017554	larp7	94	53.142	Pygocentrus_nattereri
ENSMUSG00000027968	Larp7	100	97.531	ENSRNOG00000048989	Larp7	100	93.333	Rattus_norvegicus
ENSMUSG00000027968	Larp7	82	92.593	ENSRBIG00000031916	LARP7	93	92.593	Rhinopithecus_bieti
ENSMUSG00000027968	Larp7	96	81.867	ENSRROG00000033414	LARP7	95	81.769	Rhinopithecus_roxellana
ENSMUSG00000027968	Larp7	96	83.005	ENSSBOG00000030886	-	95	82.914	Saimiri_boliviensis_boliviensis
ENSMUSG00000027968	Larp7	96	61.470	ENSSBOG00000022652	-	95	60.791	Saimiri_boliviensis_boliviensis
ENSMUSG00000027968	Larp7	99	84.337	ENSSHAG00000008153	LARP7	95	71.277	Sarcophilus_harrisii
ENSMUSG00000027968	Larp7	97	56.174	ENSSFOG00015019344	larp7	94	53.957	Scleropages_formosus
ENSMUSG00000027968	Larp7	96	57.066	ENSSMAG00000011296	larp7	94	56.272	Scophthalmus_maximus
ENSMUSG00000027968	Larp7	98	68.354	ENSSLDG00000005128	larp7	81	75.000	Seriola_lalandi_dorsalis
ENSMUSG00000027968	Larp7	52	74.419	ENSSARG00000000190	-	99	73.290	Sorex_araneus
ENSMUSG00000027968	Larp7	91	68.919	ENSSPAG00000016066	larp7	95	55.018	Stegastes_partitus
ENSMUSG00000027968	Larp7	96	80.251	ENSSSCG00000009119	LARP7	95	80.144	Sus_scrofa
ENSMUSG00000027968	Larp7	100	75.294	ENSTGUG00000001804	LARP7	95	69.369	Taeniopygia_guttata
ENSMUSG00000027968	Larp7	79	77.778	ENSTRUG00000004996	larp7	95	50.459	Takifugu_rubripes
ENSMUSG00000027968	Larp7	99	65.823	ENSTNIG00000007183	larp7	95	46.403	Tetraodon_nigroviridis
ENSMUSG00000027968	Larp7	96	79.137	ENSTBEG00000009188	LARP7	95	79.204	Tupaia_belangeri
ENSMUSG00000027968	Larp7	91	77.567	ENSTTRG00000005233	LARP7	100	77.567	Tursiops_truncatus
ENSMUSG00000027968	Larp7	96	80.431	ENSUAMG00000000836	LARP7	95	80.325	Ursus_americanus
ENSMUSG00000027968	Larp7	95	79.964	ENSUMAG00000002263	LARP7	93	79.853	Ursus_maritimus
ENSMUSG00000027968	Larp7	96	81.216	ENSVPAG00000010502	LARP7	95	81.115	Vicugna_pacos
ENSMUSG00000027968	Larp7	96	80.610	ENSVVUG00000002274	LARP7	95	80.505	Vulpes_vulpes
ENSMUSG00000027968	Larp7	89	80.822	ENSXETG00000024097	larp7	94	61.484	Xenopus_tropicalis
ENSMUSG00000027968	Larp7	100	56.471	ENSXCOG00000004883	larp7	83	72.222	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	23154982.	IGI	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0035562	negative regulation of chromatin binding	23154982.	IGI	Process
GO:0036093	germ cell proliferation	23154982.	IMP	Process
GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	23154982.	IMP	Process
GO:1990904	ribonucleoprotein complex	-	IEA	Component