EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000027981 (Gene tree)
Gene ID: 67225
Gene Symbol: Rnpc3
Alias: 2810441O16Rik|C030014B17Rik
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 25083 bases
Position: chr3:113605067-113630149
Accession: 1914475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000102145	RRM_1	PF00076.22	5.7e-18	1	2
ENSMUSP00000102145	RRM_1	PF00076.22	5.7e-18	2	2
ENSMUSP00000089792	RRM_1	PF00076.22	5.7e-18	1	2
ENSMUSP00000089792	RRM_1	PF00076.22	5.7e-18	2	2
ENSMUSP00000102146	RRM_1	PF00076.22	5.7e-18	1	2
ENSMUSP00000102146	RRM_1	PF00076.22	5.7e-18	2	2
ENSMUSP00000115492	RRM_1	PF00076.22	6.9e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000153853	-	4679	-	ENSMUSP00000115492	463 (aa)	-	F6TN13
ENSMUST00000092154	-	3888	-	ENSMUSP00000089792	514 (aa)	-	Q3UZ01
ENSMUST00000106536	-	1839	-	ENSMUSP00000102146	514 (aa)	-	Q3UZ01
ENSMUST00000135712	-	423	-	-	- (aa)	-	-
ENSMUST00000106535	-	2616	-	ENSMUSP00000102145	513 (aa)	-	Q3UZ01
ENSMUST00000132220	-	408	-	-	- (aa)	-	-
ENSMUST00000123232	-	667	-	-	- (aa)	-	-
ENSMUST00000127068	-	1532	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000027981's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000027981's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000027981	Rnpc3	100	89.126	ENSG00000185946	RNPC3	100	92.029	Homo_sapiens
ENSMUSG00000027981	Rnpc3	99	54.818	ENSAPOG00000017371	rnpc3	97	56.566	Acanthochromis_polyacanthus
ENSMUSG00000027981	Rnpc3	99	88.602	ENSAMEG00000001694	RNPC3	99	88.054	Ailuropoda_melanoleuca
ENSMUSG00000027981	Rnpc3	99	51.168	ENSACIG00000021043	rnpc3	97	53.106	Amphilophus_citrinellus
ENSMUSG00000027981	Rnpc3	99	54.873	ENSAOCG00000014052	rnpc3	95	56.400	Amphiprion_ocellaris
ENSMUSG00000027981	Rnpc3	99	54.661	ENSAPEG00000008739	rnpc3	95	56.200	Amphiprion_percula
ENSMUSG00000027981	Rnpc3	99	53.178	ENSATEG00000021263	rnpc3	97	54.600	Anabas_testudineus
ENSMUSG00000027981	Rnpc3	97	68.653	ENSAPLG00000015605	RNPC3	99	68.653	Anas_platyrhynchos
ENSMUSG00000027981	Rnpc3	98	67.174	ENSACAG00000002029	RNPC3	96	68.000	Anolis_carolinensis
ENSMUSG00000027981	Rnpc3	99	89.440	ENSANAG00000019950	RNPC3	99	88.372	Aotus_nancymaae
ENSMUSG00000027981	Rnpc3	99	53.533	ENSACLG00000014702	rnpc3	96	55.172	Astatotilapia_calliptera
ENSMUSG00000027981	Rnpc3	99	55.844	ENSAMXG00000033372	rnpc3	96	57.260	Astyanax_mexicanus
ENSMUSG00000027981	Rnpc3	100	89.903	ENSBTAG00000019091	RNPC3	99	89.903	Bos_taurus
ENSMUSG00000027981	Rnpc3	100	83.721	ENSCJAG00000035686	RNPC3	99	84.109	Callithrix_jacchus
ENSMUSG00000027981	Rnpc3	100	87.814	ENSCAFG00000019972	RNPC3	99	87.814	Canis_familiaris
ENSMUSG00000027981	Rnpc3	100	88.008	ENSCAFG00020011300	RNPC3	99	88.008	Canis_lupus_dingo
ENSMUSG00000027981	Rnpc3	100	89.535	ENSCHIG00000020361	RNPC3	99	89.535	Capra_hircus
ENSMUSG00000027981	Rnpc3	100	86.408	ENSTSYG00000030256	RNPC3	99	86.408	Carlito_syrichta
ENSMUSG00000027981	Rnpc3	94	75.744	ENSCAPG00000013600	RNPC3	98	74.942	Cavia_aperea
ENSMUSG00000027981	Rnpc3	100	87.403	ENSCPOG00000031638	RNPC3	99	87.403	Cavia_porcellus
ENSMUSG00000027981	Rnpc3	100	88.566	ENSCCAG00000024301	RNPC3	99	88.566	Cebus_capucinus
ENSMUSG00000027981	Rnpc3	99	89.201	ENSCATG00000002086	RNPC3	99	88.544	Cercocebus_atys
ENSMUSG00000027981	Rnpc3	98	68.317	ENSCATG00000035930	-	98	66.667	Cercocebus_atys
ENSMUSG00000027981	Rnpc3	100	84.078	ENSCLAG00000005169	RNPC3	99	84.078	Chinchilla_lanigera
ENSMUSG00000027981	Rnpc3	99	88.985	ENSCSAG00000001519	RNPC3	99	88.350	Chlorocebus_sabaeus
ENSMUSG00000027981	Rnpc3	99	69.313	ENSCPBG00000028311	RNPC3	99	67.630	Chrysemys_picta_bellii
ENSMUSG00000027981	Rnpc3	98	37.263	ENSCING00000021276	-	100	38.171	Ciona_intestinalis
ENSMUSG00000027981	Rnpc3	99	89.201	ENSCANG00000031444	RNPC3	99	88.350	Colobus_angolensis_palliatus
ENSMUSG00000027981	Rnpc3	100	93.786	ENSCGRG00001019276	Rnpc3	100	93.786	Cricetulus_griseus_chok1gshd
ENSMUSG00000027981	Rnpc3	97	94.013	ENSCGRG00000000053	Rnpc3	100	94.013	Cricetulus_griseus_crigri
ENSMUSG00000027981	Rnpc3	99	53.863	ENSCSEG00000013475	rnpc3	96	54.878	Cynoglossus_semilaevis
ENSMUSG00000027981	Rnpc3	99	52.830	ENSCVAG00000002645	rnpc3	97	54.348	Cyprinodon_variegatus
ENSMUSG00000027981	Rnpc3	99	54.927	ENSDARG00000011247	rnpc3	93	63.584	Danio_rerio
ENSMUSG00000027981	Rnpc3	100	86.214	ENSDNOG00000044555	-	99	86.214	Dasypus_novemcinctus
ENSMUSG00000027981	Rnpc3	100	86.214	ENSDNOG00000047498	-	99	86.214	Dasypus_novemcinctus
ENSMUSG00000027981	Rnpc3	100	87.209	ENSDORG00000027343	Rnpc3	99	87.209	Dipodomys_ordii
ENSMUSG00000027981	Rnpc3	99	46.347	ENSEBUG00000002068	rnpc3	97	47.913	Eptatretus_burgeri
ENSMUSG00000027981	Rnpc3	100	87.791	ENSEASG00005015957	RNPC3	99	87.791	Equus_asinus_asinus
ENSMUSG00000027981	Rnpc3	100	87.791	ENSECAG00000021148	RNPC3	99	87.791	Equus_caballus
ENSMUSG00000027981	Rnpc3	99	53.926	ENSELUG00000002264	rnpc3	97	53.435	Esox_lucius
ENSMUSG00000027981	Rnpc3	100	88.178	ENSFCAG00000024312	RNPC3	99	88.178	Felis_catus
ENSMUSG00000027981	Rnpc3	97	71.082	ENSFALG00000002580	RNPC3	99	72.115	Ficedula_albicollis
ENSMUSG00000027981	Rnpc3	100	88.178	ENSFDAG00000019948	RNPC3	100	88.178	Fukomys_damarensis
ENSMUSG00000027981	Rnpc3	99	48.817	ENSFHEG00000020647	rnpc3	98	50.000	Fundulus_heteroclitus
ENSMUSG00000027981	Rnpc3	99	52.991	ENSGMOG00000019213	rnpc3	95	53.469	Gadus_morhua
ENSMUSG00000027981	Rnpc3	99	69.828	ENSGALG00000005162	RNPC3	89	69.636	Gallus_gallus
ENSMUSG00000027981	Rnpc3	99	51.907	ENSGAFG00000017236	rnpc3	96	53.785	Gambusia_affinis
ENSMUSG00000027981	Rnpc3	99	53.348	ENSGACG00000002048	rnpc3	96	54.871	Gasterosteus_aculeatus
ENSMUSG00000027981	Rnpc3	99	68.884	ENSGAGG00000008438	RNPC3	96	68.639	Gopherus_agassizii
ENSMUSG00000027981	Rnpc3	99	74.298	ENSGGOG00000026201	-	99	73.386	Gorilla_gorilla
ENSMUSG00000027981	Rnpc3	78	78.947	ENSHBUG00000015966	rnpc3	82	78.947	Haplochromis_burtoni
ENSMUSG00000027981	Rnpc3	100	87.403	ENSHGLG00000001708	RNPC3	99	87.403	Heterocephalus_glaber_female
ENSMUSG00000027981	Rnpc3	100	87.403	ENSHGLG00100003005	RNPC3	99	87.403	Heterocephalus_glaber_male
ENSMUSG00000027981	Rnpc3	99	53.404	ENSHCOG00000017135	rnpc3	97	55.311	Hippocampus_comes
ENSMUSG00000027981	Rnpc3	99	54.757	ENSIPUG00000002916	rnpc3	97	54.960	Ictalurus_punctatus
ENSMUSG00000027981	Rnpc3	100	87.791	ENSSTOG00000025020	RNPC3	99	87.791	Ictidomys_tridecemlineatus
ENSMUSG00000027981	Rnpc3	99	86.853	ENSJJAG00000010203	Rnpc3	100	86.822	Jaculus_jaculus
ENSMUSG00000027981	Rnpc3	99	52.891	ENSKMAG00000017358	rnpc3	97	52.579	Kryptolebias_marmoratus
ENSMUSG00000027981	Rnpc3	99	53.632	ENSLBEG00000024901	rnpc3	95	55.533	Labrus_bergylta
ENSMUSG00000027981	Rnpc3	99	62.500	ENSLACG00000005720	RNPC3	90	62.677	Latimeria_chalumnae
ENSMUSG00000027981	Rnpc3	99	60.390	ENSLOCG00000007986	rnpc3	96	60.941	Lepisosteus_oculatus
ENSMUSG00000027981	Rnpc3	100	86.822	ENSLAFG00000032342	RNPC3	100	86.822	Loxodonta_africana
ENSMUSG00000027981	Rnpc3	99	64.854	ENSMFAG00000002917	-	99	66.019	Macaca_fascicularis
ENSMUSG00000027981	Rnpc3	99	88.985	ENSMFAG00000002004	RNPC3	99	88.350	Macaca_fascicularis
ENSMUSG00000027981	Rnpc3	85	81.221	ENSMMUG00000002098	-	94	78.829	Macaca_mulatta
ENSMUSG00000027981	Rnpc3	99	88.985	ENSMMUG00000018039	RNPC3	99	88.350	Macaca_mulatta
ENSMUSG00000027981	Rnpc3	99	83.585	ENSMNEG00000033950	RNPC3	99	83.495	Macaca_nemestrina
ENSMUSG00000027981	Rnpc3	98	60.474	ENSMNEG00000029209	-	98	64.427	Macaca_nemestrina
ENSMUSG00000027981	Rnpc3	98	67.059	ENSMLEG00000034644	-	98	66.863	Mandrillus_leucophaeus
ENSMUSG00000027981	Rnpc3	99	89.201	ENSMLEG00000033628	RNPC3	99	88.544	Mandrillus_leucophaeus
ENSMUSG00000027981	Rnpc3	99	49.474	ENSMAMG00000007496	rnpc3	97	48.356	Mastacembelus_armatus
ENSMUSG00000027981	Rnpc3	99	52.929	ENSMZEG00005020233	rnpc3	97	54.563	Maylandia_zebra
ENSMUSG00000027981	Rnpc3	97	68.113	ENSMGAG00000006381	RNPC3	99	68.330	Meleagris_gallopavo
ENSMUSG00000027981	Rnpc3	99	95.032	ENSMAUG00000001358	Rnpc3	100	94.563	Mesocricetus_auratus
ENSMUSG00000027981	Rnpc3	100	89.341	ENSMICG00000029591	RNPC3	99	89.341	Microcebus_murinus
ENSMUSG00000027981	Rnpc3	99	92.441	ENSMOCG00000013423	Rnpc3	100	92.456	Microtus_ochrogaster
ENSMUSG00000027981	Rnpc3	99	51.078	ENSMMOG00000005309	rnpc3	97	50.797	Mola_mola
ENSMUSG00000027981	Rnpc3	99	78.834	ENSMODG00000002946	RNPC3	99	77.670	Monodelphis_domestica
ENSMUSG00000027981	Rnpc3	99	51.163	ENSMALG00000015471	rnpc3	97	52.906	Monopterus_albus
ENSMUSG00000027981	Rnpc3	100	98.833	MGP_CAROLIEiJ_G0025555	Rnpc3	100	98.833	Mus_caroli
ENSMUSG00000027981	Rnpc3	100	98.249	MGP_PahariEiJ_G0027001	Rnpc3	100	98.249	Mus_pahari
ENSMUSG00000027981	Rnpc3	100	99.416	MGP_SPRETEiJ_G0026505	Rnpc3	100	99.416	Mus_spretus
ENSMUSG00000027981	Rnpc3	100	87.597	ENSMPUG00000007349	RNPC3	99	87.597	Mustela_putorius_furo
ENSMUSG00000027981	Rnpc3	100	85.853	ENSMLUG00000028743	RNPC3	99	85.853	Myotis_lucifugus
ENSMUSG00000027981	Rnpc3	99	91.016	ENSNGAG00000010939	Rnpc3	99	91.016	Nannospalax_galili
ENSMUSG00000027981	Rnpc3	99	53.319	ENSNBRG00000012196	rnpc3	93	54.970	Neolamprologus_brichardi
ENSMUSG00000027981	Rnpc3	100	88.932	ENSNLEG00000012013	RNPC3	99	88.932	Nomascus_leucogenys
ENSMUSG00000027981	Rnpc3	100	84.660	ENSODEG00000007612	RNPC3	99	84.660	Octodon_degus
ENSMUSG00000027981	Rnpc3	99	53.747	ENSONIG00000004770	rnpc3	99	55.781	Oreochromis_niloticus
ENSMUSG00000027981	Rnpc3	99	74.082	ENSOANG00000008220	RNPC3	99	75.378	Ornithorhynchus_anatinus
ENSMUSG00000027981	Rnpc3	100	87.597	ENSOCUG00000004016	RNPC3	99	87.597	Oryctolagus_cuniculus
ENSMUSG00000027981	Rnpc3	99	51.496	ENSORLG00000005694	rnpc3	97	54.217	Oryzias_latipes
ENSMUSG00000027981	Rnpc3	99	52.137	ENSORLG00020005513	rnpc3	97	54.819	Oryzias_latipes_hni
ENSMUSG00000027981	Rnpc3	99	51.709	ENSORLG00015002179	rnpc3	97	54.839	Oryzias_latipes_hsok
ENSMUSG00000027981	Rnpc3	99	52.790	ENSOMEG00000017737	rnpc3	97	55.444	Oryzias_melastigma
ENSMUSG00000027981	Rnpc3	100	88.372	ENSOGAG00000026182	RNPC3	99	88.372	Otolemur_garnettii
ENSMUSG00000027981	Rnpc3	100	89.341	ENSOARG00000018719	RNPC3	99	89.341	Ovis_aries
ENSMUSG00000027981	Rnpc3	99	76.026	ENSPPAG00000030278	-	99	75.147	Pan_paniscus
ENSMUSG00000027981	Rnpc3	100	88.588	ENSPPAG00000037459	RNPC3	99	88.588	Pan_paniscus
ENSMUSG00000027981	Rnpc3	100	87.791	ENSPPRG00000020246	RNPC3	99	87.791	Panthera_pardus
ENSMUSG00000027981	Rnpc3	99	88.553	ENSPTIG00000009887	RNPC3	99	88.340	Panthera_tigris_altaica
ENSMUSG00000027981	Rnpc3	99	74.730	ENSPTRG00000044227	-	98	73.674	Pan_troglodytes
ENSMUSG00000027981	Rnpc3	100	88.760	ENSPTRG00000033902	RNPC3	99	88.760	Pan_troglodytes
ENSMUSG00000027981	Rnpc3	99	89.394	ENSPANG00000012137	RNPC3	99	88.716	Papio_anubis
ENSMUSG00000027981	Rnpc3	99	70.538	ENSPANG00000029957	-	99	69.822	Papio_anubis
ENSMUSG00000027981	Rnpc3	99	52.321	ENSPKIG00000008828	rnpc3	95	50.392	Paramormyrops_kingsleyae
ENSMUSG00000027981	Rnpc3	70	68.485	ENSPSIG00000007396	RNPC3	99	66.970	Pelodiscus_sinensis
ENSMUSG00000027981	Rnpc3	98	50.756	ENSPMGG00000011742	rnpc3	95	51.329	Periophthalmus_magnuspinnatus
ENSMUSG00000027981	Rnpc3	98	92.763	ENSPEMG00000020112	Rnpc3	100	93.570	Peromyscus_maniculatus_bairdii
ENSMUSG00000027981	Rnpc3	99	44.672	ENSPMAG00000003778	rnpc3	98	44.571	Petromyzon_marinus
ENSMUSG00000027981	Rnpc3	100	78.447	ENSPCIG00000004415	-	99	78.447	Phascolarctos_cinereus
ENSMUSG00000027981	Rnpc3	99	51.915	ENSPFOG00000009895	rnpc3	97	53.614	Poecilia_formosa
ENSMUSG00000027981	Rnpc3	99	51.915	ENSPLAG00000012023	rnpc3	97	53.614	Poecilia_latipinna
ENSMUSG00000027981	Rnpc3	99	52.128	ENSPMEG00000003663	rnpc3	97	53.815	Poecilia_mexicana
ENSMUSG00000027981	Rnpc3	99	51.266	ENSPREG00000010206	rnpc3	97	53.507	Poecilia_reticulata
ENSMUSG00000027981	Rnpc3	84	84.562	ENSPPYG00000001102	RNPC3	99	84.562	Pongo_abelii
ENSMUSG00000027981	Rnpc3	99	53.319	ENSPNYG00000020603	rnpc3	96	54.970	Pundamilia_nyererei
ENSMUSG00000027981	Rnpc3	100	94.369	ENSRNOG00000017310	Rnpc3	100	94.369	Rattus_norvegicus
ENSMUSG00000027981	Rnpc3	99	83.405	ENSRBIG00000043897	RNPC3	99	83.333	Rhinopithecus_bieti
ENSMUSG00000027981	Rnpc3	99	89.633	ENSRROG00000032334	RNPC3	99	88.932	Rhinopithecus_roxellana
ENSMUSG00000027981	Rnpc3	99	89.849	ENSSBOG00000024473	RNPC3	98	90.288	Saimiri_boliviensis_boliviensis
ENSMUSG00000027981	Rnpc3	100	77.670	ENSSHAG00000011859	RNPC3	99	77.670	Sarcophilus_harrisii
ENSMUSG00000027981	Rnpc3	99	57.940	ENSSFOG00015013055	rnpc3	99	55.859	Scleropages_formosus
ENSMUSG00000027981	Rnpc3	99	50.847	ENSSMAG00000020346	rnpc3	97	51.068	Scophthalmus_maximus
ENSMUSG00000027981	Rnpc3	99	53.079	ENSSDUG00000006600	rnpc3	96	54.527	Seriola_dumerili
ENSMUSG00000027981	Rnpc3	99	53.079	ENSSLDG00000007979	rnpc3	96	54.527	Seriola_lalandi_dorsalis
ENSMUSG00000027981	Rnpc3	99	64.224	ENSSPUG00000003872	-	93	64.729	Sphenodon_punctatus
ENSMUSG00000027981	Rnpc3	99	69.330	ENSSPUG00000008539	-	98	67.761	Sphenodon_punctatus
ENSMUSG00000027981	Rnpc3	99	53.747	ENSSPAG00000005633	rnpc3	97	56.364	Stegastes_partitus
ENSMUSG00000027981	Rnpc3	100	87.184	ENSSSCG00000037254	RNPC3	99	86.990	Sus_scrofa
ENSMUSG00000027981	Rnpc3	97	70.925	ENSTGUG00000004795	-	99	70.925	Taeniopygia_guttata
ENSMUSG00000027981	Rnpc3	99	53.474	ENSTNIG00000018963	rnpc3	97	54.871	Tetraodon_nigroviridis
ENSMUSG00000027981	Rnpc3	99	89.224	ENSUMAG00000007775	RNPC3	99	89.349	Ursus_maritimus
ENSMUSG00000027981	Rnpc3	100	88.008	ENSVVUG00000000331	RNPC3	99	88.008	Vulpes_vulpes
ENSMUSG00000027981	Rnpc3	100	49.146	ENSXETG00000025027	rnpc3	100	49.143	Xenopus_tropicalis
ENSMUSG00000027981	Rnpc3	99	50.943	ENSXCOG00000005013	rnpc3	97	49.711	Xiphophorus_couchianus
ENSMUSG00000027981	Rnpc3	99	51.374	ENSXMAG00000006495	rnpc3	97	53.373	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	18559850.	ISS	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0030626	U12 snRNA binding	21873635.	IBA	Function
GO:0097157	pre-mRNA intronic binding	21873635.	IBA	Function