EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028010 (Gene tree)
Gene ID: 68147
Gene Symbol: Gar1
Alias: C430047J18Rik|GAR1|Nola1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 6485 bases
Position: chr3:129824912-129831396
Accession: 1930948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000118752	Gar1	PF04410.14	6.4e-39	1	1
ENSMUSP00000029643	Gar1	PF04410.14	9.4e-39	1	1
ENSMUSP00000115191	Gar1	PF04410.14	1.7e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000127864	-	522	-	-	- (aa)	-	-
ENSMUST00000134174	-	520	-	ENSMUSP00000115191	79 (aa)	-	F6SL78
ENSMUST00000128441	-	440	-	-	- (aa)	-	-
ENSMUST00000029643	-	1271	XM_011240208	ENSMUSP00000029643	231 (aa)	XP_011238510	Q9CY66
ENSMUST00000149071	-	685	-	ENSMUSP00000118752	198 (aa)	-	D3YZ09
ENSMUST00000143545	-	418	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028010's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028010's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028010	Gar1	70	100.000	ENSG00000109534	GAR1	51	96.364	Homo_sapiens
ENSMUSG00000028010	Gar1	70	98.182	ENSAPOG00000019754	gar1	68	84.828	Acanthochromis_polyacanthus
ENSMUSG00000028010	Gar1	70	100.000	ENSAMEG00000004605	GAR1	54	94.545	Ailuropoda_melanoleuca
ENSMUSG00000028010	Gar1	96	92.105	ENSAOCG00000020947	gar1	51	93.636	Amphiprion_ocellaris
ENSMUSG00000028010	Gar1	96	92.105	ENSAPEG00000001676	gar1	51	93.636	Amphiprion_percula
ENSMUSG00000028010	Gar1	96	94.805	ENSATEG00000003733	gar1	51	93.636	Anabas_testudineus
ENSMUSG00000028010	Gar1	70	92.727	ENSAPLG00000010926	GAR1	59	90.566	Anas_platyrhynchos
ENSMUSG00000028010	Gar1	70	94.545	ENSACAG00000010031	GAR1	50	91.509	Anolis_carolinensis
ENSMUSG00000028010	Gar1	70	100.000	ENSANAG00000021608	GAR1	59	87.500	Aotus_nancymaae
ENSMUSG00000028010	Gar1	70	100.000	ENSBTAG00000000748	GAR1	52	95.455	Bos_taurus
ENSMUSG00000028010	Gar1	59	57.447	WBGene00022046	Y66H1A.4	58	56.944	Caenorhabditis_elegans
ENSMUSG00000028010	Gar1	70	100.000	ENSCJAG00000004041	GAR1	59	87.500	Callithrix_jacchus
ENSMUSG00000028010	Gar1	66	100.000	ENSCAFG00020015566	GAR1	57	95.455	Canis_lupus_dingo
ENSMUSG00000028010	Gar1	70	100.000	ENSCHIG00000016026	-	53	95.455	Capra_hircus
ENSMUSG00000028010	Gar1	52	97.561	ENSCHIG00000011049	-	52	88.235	Capra_hircus
ENSMUSG00000028010	Gar1	90	72.626	ENSTSYG00000026632	-	56	88.182	Carlito_syrichta
ENSMUSG00000028010	Gar1	99	93.590	ENSTSYG00000013668	-	52	96.364	Carlito_syrichta
ENSMUSG00000028010	Gar1	100	95.000	ENSCAPG00000014977	-	100	95.000	Cavia_aperea
ENSMUSG00000028010	Gar1	99	94.937	ENSCPOG00000004216	GAR1	51	95.455	Cavia_porcellus
ENSMUSG00000028010	Gar1	70	100.000	ENSCCAG00000029372	GAR1	59	87.500	Cebus_capucinus
ENSMUSG00000028010	Gar1	90	86.034	ENSCATG00000021854	GAR1	56	96.364	Cercocebus_atys
ENSMUSG00000028010	Gar1	100	96.250	ENSCLAG00000005335	GAR1	100	96.250	Chinchilla_lanigera
ENSMUSG00000028010	Gar1	89	85.795	ENSCSAG00000003922	GAR1	56	96.364	Chlorocebus_sabaeus
ENSMUSG00000028010	Gar1	70	96.364	ENSCPBG00000004310	GAR1	56	90.909	Chrysemys_picta_bellii
ENSMUSG00000028010	Gar1	63	74.000	ENSCING00000005744	-	52	66.038	Ciona_intestinalis
ENSMUSG00000028010	Gar1	70	98.182	ENSCANG00000039262	GAR1	51	95.455	Colobus_angolensis_palliatus
ENSMUSG00000028010	Gar1	99	97.436	ENSCGRG00001003919	Gar1	50	98.182	Cricetulus_griseus_chok1gshd
ENSMUSG00000028010	Gar1	99	97.436	ENSCGRG00000010165	-	94	96.667	Cricetulus_griseus_crigri
ENSMUSG00000028010	Gar1	70	96.364	ENSCSEG00000003525	gar1	50	91.818	Cynoglossus_semilaevis
ENSMUSG00000028010	Gar1	70	96.364	ENSCVAG00000002103	gar1	72	91.935	Cyprinodon_variegatus
ENSMUSG00000028010	Gar1	99	94.872	ENSDNOG00000037632	GAR1	56	95.455	Dasypus_novemcinctus
ENSMUSG00000028010	Gar1	70	98.182	ENSDORG00000000482	Gar1	51	94.545	Dipodomys_ordii
ENSMUSG00000028010	Gar1	89	66.038	ENSEBUG00000011178	gar1	79	71.014	Eptatretus_burgeri
ENSMUSG00000028010	Gar1	90	82.682	ENSEASG00005004658	GAR1	51	96.364	Equus_asinus_asinus
ENSMUSG00000028010	Gar1	90	82.123	ENSECAG00000013624	GAR1	56	95.455	Equus_caballus
ENSMUSG00000028010	Gar1	66	94.231	ENSELUG00000021108	gar1	50	90.000	Esox_lucius
ENSMUSG00000028010	Gar1	78	53.571	ENSFCAG00000025841	-	57	60.504	Felis_catus
ENSMUSG00000028010	Gar1	70	100.000	ENSFCAG00000040791	-	53	95.455	Felis_catus
ENSMUSG00000028010	Gar1	100	96.250	ENSFDAG00000006333	-	100	96.250	Fukomys_damarensis
ENSMUSG00000028010	Gar1	70	94.545	ENSFHEG00000008068	gar1	70	91.870	Fundulus_heteroclitus
ENSMUSG00000028010	Gar1	67	98.113	ENSGAGG00000004393	GAR1	56	90.826	Gopherus_agassizii
ENSMUSG00000028010	Gar1	89	72.263	ENSGGOG00000036205	-	54	77.064	Gorilla_gorilla
ENSMUSG00000028010	Gar1	70	100.000	ENSGGOG00000008681	GAR1	51	97.273	Gorilla_gorilla
ENSMUSG00000028010	Gar1	96	94.805	ENSHBUG00000023860	gar1	59	96.522	Haplochromis_burtoni
ENSMUSG00000028010	Gar1	99	93.590	ENSHGLG00000000493	GAR1	72	100.000	Heterocephalus_glaber_female
ENSMUSG00000028010	Gar1	66	100.000	ENSHGLG00100016873	-	72	100.000	Heterocephalus_glaber_male
ENSMUSG00000028010	Gar1	70	96.364	ENSIPUG00000003194	gar1	59	85.600	Ictalurus_punctatus
ENSMUSG00000028010	Gar1	97	91.870	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
ENSMUSG00000028010	Gar1	70	96.364	ENSKMAG00000010402	gar1	52	90.909	Kryptolebias_marmoratus
ENSMUSG00000028010	Gar1	70	92.727	ENSLACG00000003306	GAR1	64	88.679	Latimeria_chalumnae
ENSMUSG00000028010	Gar1	72	78.947	ENSMFAG00000003572	-	54	80.909	Macaca_fascicularis
ENSMUSG00000028010	Gar1	90	86.034	ENSMFAG00000024592	GAR1	51	96.364	Macaca_fascicularis
ENSMUSG00000028010	Gar1	90	86.034	ENSMMUG00000021225	GAR1	51	96.364	Macaca_mulatta
ENSMUSG00000028010	Gar1	90	86.034	ENSMNEG00000042594	GAR1	51	96.364	Macaca_nemestrina
ENSMUSG00000028010	Gar1	90	85.475	ENSMLEG00000002496	GAR1	59	87.500	Mandrillus_leucophaeus
ENSMUSG00000028010	Gar1	68	98.148	ENSMAMG00000017583	gar1	64	86.525	Mastacembelus_armatus
ENSMUSG00000028010	Gar1	100	98.734	ENSMAUG00000016788	Gar1	100	98.734	Mesocricetus_auratus
ENSMUSG00000028010	Gar1	70	98.182	ENSMICG00000003326	GAR1	51	95.455	Microcebus_murinus
ENSMUSG00000028010	Gar1	100	98.734	ENSMOCG00000001340	Gar1	100	98.734	Microtus_ochrogaster
ENSMUSG00000028010	Gar1	70	98.182	ENSMMOG00000004156	gar1	52	93.458	Mola_mola
ENSMUSG00000028010	Gar1	70	98.182	ENSMODG00000005897	GAR1	53	82.540	Monodelphis_domestica
ENSMUSG00000028010	Gar1	70	96.364	ENSMALG00000009672	gar1	73	88.722	Monopterus_albus
ENSMUSG00000028010	Gar1	100	100.000	MGP_CAROLIEiJ_G0025627	Gar1	100	100.000	Mus_caroli
ENSMUSG00000028010	Gar1	100	100.000	MGP_PahariEiJ_G0027076	Gar1	100	100.000	Mus_pahari
ENSMUSG00000028010	Gar1	100	100.000	MGP_SPRETEiJ_G0026580	Gar1	100	100.000	Mus_spretus
ENSMUSG00000028010	Gar1	70	100.000	ENSMPUG00000008615	GAR1	53	95.455	Mustela_putorius_furo
ENSMUSG00000028010	Gar1	92	93.548	ENSNGAG00000008268	Gar1	71	98.182	Nannospalax_galili
ENSMUSG00000028010	Gar1	70	100.000	ENSNLEG00000016578	GAR1	51	96.364	Nomascus_leucogenys
ENSMUSG00000028010	Gar1	72	77.193	ENSNLEG00000034282	-	56	80.909	Nomascus_leucogenys
ENSMUSG00000028010	Gar1	99	96.203	ENSODEG00000011083	GAR1	57	93.636	Octodon_degus
ENSMUSG00000028010	Gar1	96	94.805	ENSONIG00000001085	gar1	50	93.636	Oreochromis_niloticus
ENSMUSG00000028010	Gar1	70	100.000	ENSOCUG00000003901	GAR1	51	95.455	Oryctolagus_cuniculus
ENSMUSG00000028010	Gar1	96	94.805	ENSORLG00000020583	gar1	50	92.727	Oryzias_latipes
ENSMUSG00000028010	Gar1	96	94.805	ENSORLG00020008602	gar1	50	92.727	Oryzias_latipes_hni
ENSMUSG00000028010	Gar1	96	94.805	ENSORLG00015017643	gar1	50	92.727	Oryzias_latipes_hsok
ENSMUSG00000028010	Gar1	78	96.774	ENSOGAG00000004693	GAR1	52	95.455	Otolemur_garnettii
ENSMUSG00000028010	Gar1	70	100.000	ENSOARG00000004910	GAR1	52	95.455	Ovis_aries
ENSMUSG00000028010	Gar1	99	94.872	ENSPPAG00000014081	GAR1	55	96.364	Pan_paniscus
ENSMUSG00000028010	Gar1	70	100.000	ENSPPRG00000023697	GAR1	53	95.455	Panthera_pardus
ENSMUSG00000028010	Gar1	70	100.000	ENSPTIG00000021565	GAR1	53	95.455	Panthera_tigris_altaica
ENSMUSG00000028010	Gar1	70	100.000	ENSPTRG00000016364	GAR1	56	96.364	Pan_troglodytes
ENSMUSG00000028010	Gar1	70	80.000	ENSPTRG00000049340	-	76	71.975	Pan_troglodytes
ENSMUSG00000028010	Gar1	70	100.000	ENSPANG00000000639	GAR1	51	96.364	Papio_anubis
ENSMUSG00000028010	Gar1	72	78.947	ENSPANG00000033062	-	69	70.060	Papio_anubis
ENSMUSG00000028010	Gar1	70	96.364	ENSPSIG00000002970	GAR1	50	90.909	Pelodiscus_sinensis
ENSMUSG00000028010	Gar1	100	98.734	ENSPEMG00000015838	Gar1	100	98.734	Peromyscus_maniculatus_bairdii
ENSMUSG00000028010	Gar1	70	96.364	ENSPFOG00000024155	gar1	81	84.000	Poecilia_formosa
ENSMUSG00000028010	Gar1	70	96.364	ENSPLAG00000015056	gar1	81	84.000	Poecilia_latipinna
ENSMUSG00000028010	Gar1	70	96.364	ENSPMEG00000009320	gar1	82	84.667	Poecilia_mexicana
ENSMUSG00000028010	Gar1	70	96.364	ENSPREG00000010377	gar1	74	82.237	Poecilia_reticulata
ENSMUSG00000028010	Gar1	70	100.000	ENSPPYG00000014996	GAR1	51	96.364	Pongo_abelii
ENSMUSG00000028010	Gar1	89	85.227	ENSPCOG00000027049	GAR1	56	96.364	Propithecus_coquereli
ENSMUSG00000028010	Gar1	91	93.889	ENSRNOG00000061146	Gar1	100	93.889	Rattus_norvegicus
ENSMUSG00000028010	Gar1	90	82.123	ENSRBIG00000019547	GAR1	56	96.364	Rhinopithecus_bieti
ENSMUSG00000028010	Gar1	71	76.786	ENSRBIG00000042411	-	53	80.000	Rhinopithecus_bieti
ENSMUSG00000028010	Gar1	71	76.786	ENSRROG00000044348	-	53	80.000	Rhinopithecus_roxellana
ENSMUSG00000028010	Gar1	90	86.034	ENSRROG00000028454	GAR1	56	96.364	Rhinopithecus_roxellana
ENSMUSG00000028010	Gar1	94	45.946	YHR089C	-	71	53.719	Saccharomyces_cerevisiae
ENSMUSG00000028010	Gar1	70	100.000	ENSSBOG00000024785	GAR1	51	96.364	Saimiri_boliviensis_boliviensis
ENSMUSG00000028010	Gar1	70	96.364	ENSSMAG00000009976	gar1	54	90.598	Scophthalmus_maximus
ENSMUSG00000028010	Gar1	96	94.805	ENSSLDG00000023264	gar1	52	92.727	Seriola_lalandi_dorsalis
ENSMUSG00000028010	Gar1	70	96.364	ENSSPUG00000008707	GAR1	61	91.818	Sphenodon_punctatus
ENSMUSG00000028010	Gar1	96	94.805	ENSSPAG00000005974	gar1	51	93.162	Stegastes_partitus
ENSMUSG00000028010	Gar1	70	100.000	ENSSSCG00000009137	GAR1	54	95.455	Sus_scrofa
ENSMUSG00000028010	Gar1	70	94.545	ENSTGUG00000004185	GAR1	67	90.909	Taeniopygia_guttata
ENSMUSG00000028010	Gar1	70	90.909	ENSTRUG00000020580	gar1	53	90.000	Takifugu_rubripes
ENSMUSG00000028010	Gar1	82	84.615	ENSTNIG00000013023	gar1	63	92.727	Tetraodon_nigroviridis
ENSMUSG00000028010	Gar1	66	100.000	ENSUAMG00000005652	GAR1	57	95.455	Ursus_americanus
ENSMUSG00000028010	Gar1	70	100.000	ENSUMAG00000000776	GAR1	53	95.455	Ursus_maritimus
ENSMUSG00000028010	Gar1	70	100.000	ENSVVUG00000017612	GAR1	57	95.455	Vulpes_vulpes
ENSMUSG00000028010	Gar1	70	96.364	ENSXCOG00000014843	GAR1	66	89.600	Xiphophorus_couchianus
ENSMUSG00000028010	Gar1	70	96.364	ENSXMAG00000002316	GAR1	65	89.600	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000454	snoRNA guided rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0001651	dense fibrillar component	11074001.	ISO	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	23685356.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0030515	snoRNA binding	11074001.	ISO	Function
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:0034513	box H/ACA snoRNA binding	21873635.	IBA	Function
GO:0042254	ribosome biogenesis	-	IEA	Process