EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028034 (Gene tree)
Gene ID
51886
Gene Symbol
Fubp1
Alias
9530027K12Rik|FBP|Fubp|Fubp4
Full Name
far upstream element (FUSE) binding protein 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
26405 bases
Position
chr3:152210422-152236826
Accession
1196294
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000143370KH_1PF00013.299.1e-7014
ENSMUSP00000143370KH_1PF00013.299.1e-7024
ENSMUSP00000143370KH_1PF00013.299.1e-7034
ENSMUSP00000143370KH_1PF00013.299.1e-7044
ENSMUSP00000101727KH_1PF00013.292.8e-6914
ENSMUSP00000101727KH_1PF00013.292.8e-6924
ENSMUSP00000101727KH_1PF00013.292.8e-6934
ENSMUSP00000101727KH_1PF00013.292.8e-6944
ENSMUSP00000130145KH_1PF00013.292.8e-6914
ENSMUSP00000130145KH_1PF00013.292.8e-6924
ENSMUSP00000130145KH_1PF00013.292.8e-6934
ENSMUSP00000130145KH_1PF00013.292.8e-6944
ENSMUSP00000143729KH_1PF00013.292.8e-6914
ENSMUSP00000143729KH_1PF00013.292.8e-6924
ENSMUSP00000143729KH_1PF00013.292.8e-6934
ENSMUSP00000143729KH_1PF00013.292.8e-6944
ENSMUSP00000143101KH_1PF00013.293e-6914
ENSMUSP00000143101KH_1PF00013.293e-6924
ENSMUSP00000143101KH_1PF00013.293e-6934
ENSMUSP00000143101KH_1PF00013.293e-6944
ENSMUSP00000143354KH_1PF00013.293.1e-6914
ENSMUSP00000143354KH_1PF00013.293.1e-6924
ENSMUSP00000143354KH_1PF00013.293.1e-6934
ENSMUSP00000143354KH_1PF00013.293.1e-6944
ENSMUSP00000143204KH_1PF00013.299.7e-3812
ENSMUSP00000143204KH_1PF00013.299.7e-3822
ENSMUSP00000143478KH_1PF00013.291.4e-1611
ENSMUSP00000143370KH_2PF07650.171.7e-2212
ENSMUSP00000143370KH_2PF07650.171.7e-2222
ENSMUSP00000143729KH_2PF07650.174.3e-2212
ENSMUSP00000143729KH_2PF07650.174.3e-2222
ENSMUSP00000143101KH_2PF07650.174.6e-2212
ENSMUSP00000143101KH_2PF07650.174.6e-2222
ENSMUSP00000143354KH_2PF07650.174.7e-2212
ENSMUSP00000143354KH_2PF07650.174.7e-2222
ENSMUSP00000101727KH_2PF07650.174.7e-2212
ENSMUSP00000101727KH_2PF07650.174.7e-2222
ENSMUSP00000130145KH_2PF07650.174.7e-2212
ENSMUSP00000130145KH_2PF07650.174.7e-2222
ENSMUSP00000143204KH_2PF07650.174.9e-1011
ENSMUSP00000143478KH_2PF07650.176.7e-0611
ENSMUSP00000142638DUF1897PF09005.101.9e-1212
ENSMUSP00000142638DUF1897PF09005.101.9e-1222
ENSMUSP00000143686DUF1897PF09005.101.9e-1212
ENSMUSP00000143686DUF1897PF09005.101.9e-1222
ENSMUSP00000101727DUF1897PF09005.103.1e-1112
ENSMUSP00000101727DUF1897PF09005.103.1e-1122
ENSMUSP00000130145DUF1897PF09005.103.1e-1112
ENSMUSP00000130145DUF1897PF09005.103.1e-1122
ENSMUSP00000143729DUF1897PF09005.103.1e-1112
ENSMUSP00000143729DUF1897PF09005.103.1e-1122
ENSMUSP00000143101DUF1897PF09005.103.3e-1112
ENSMUSP00000143101DUF1897PF09005.103.3e-1122
ENSMUSP00000143354DUF1897PF09005.103.4e-1112
ENSMUSP00000143354DUF1897PF09005.103.4e-1122
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000196695-2374XM_006501666ENSMUSP00000143729643 (aa)XP_006501736A0A0G2JGW9
ENSMUST00000196739-2526XM_006501662ENSMUSP00000143101651 (aa)XP_006501725Q91WJ8
ENSMUST00000198539-5099--- (aa)--
ENSMUST00000106121-4525-ENSMUSP00000101727642 (aa)-Q3TUE1
ENSMUST00000199202-1040-ENSMUSP00000143204306 (aa)-A0A0G2JFK2
ENSMUST00000198046-4006--- (aa)--
ENSMUST00000199918-796-ENSMUSP00000142638142 (aa)-A0A0G2JE55
ENSMUST00000199199-432--- (aa)--
ENSMUST00000200207-665--- (aa)--
ENSMUST00000199127-512--- (aa)--
ENSMUST00000199876-4846-ENSMUSP00000143618700 (aa)-Q3UUU2
ENSMUST00000200056-809-ENSMUSP00000143686157 (aa)-A0A0G2JGT1
ENSMUST00000197141-424--- (aa)--
ENSMUST00000200452-4525-ENSMUSP00000143019642 (aa)-Q3TUE1
ENSMUST00000198405-800-ENSMUSP00000142990174 (aa)-A0A0G2JF21
ENSMUST00000198227-3163-ENSMUSP00000143370523 (aa)-A0A0G2JG00
ENSMUST00000196429-585-ENSMUSP00000143478149 (aa)-A0A0G2JG96
ENSMUST00000166984-6523XM_017319638ENSMUSP00000130145642 (aa)-Q3TUE1
ENSMUST00000200524-2552XM_006501660ENSMUSP00000143354654 (aa)XP_006501723A0A0G2JFY5
ENSMUST00000196062-2093-ENSMUSP0000014371869 (aa)-A0A0G2JGV9
Gene Model
Click here to download ENSMUSG00000028034's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028034's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000028034Fubp16136.765ENSMUSG00000030411Nova25436.765
ENSMUSG00000028034Fubp19459.208ENSMUSG00000026843Fubp39664.324
ENSMUSG00000028034Fubp15036.364ENSMUSG00000021047Nova15736.364
ENSMUSG00000028034Fubp17233.019ENSMUSG00000001120Pcbp36631.250
ENSMUSG00000028034Fubp17234.524ENSMUSG00000023495Pcbp47932.759
ENSMUSG00000028034Fubp19664.410ENSMUSG00000007670Khsrp7367.654
ENSMUSG00000028034Fubp15335.211ENSMUSG00000021546Hnrnpk5734.615
ENSMUSG00000028034Fubp15730.667ENSMUSG00000056851Pcbp29030.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028034Fubp110098.015ENSG00000162613FUBP110098.015Homo_sapiens
ENSMUSG00000028034Fubp19974.669ENSAPOG00000014845fubp17076.432Acanthochromis_polyacanthus
ENSMUSG00000028034Fubp19899.315ENSAMEG00000007372FUBP110094.328Ailuropoda_melanoleuca
ENSMUSG00000028034Fubp19971.429ENSACIG00000020024fubp16974.279Amphilophus_citrinellus
ENSMUSG00000028034Fubp19973.864ENSAPEG00000012232fubp17277.483Amphiprion_percula
ENSMUSG00000028034Fubp19975.191ENSATEG00000018619fubp17078.619Anabas_testudineus
ENSMUSG00000028034Fubp19397.947ENSAPLG00000005965FUBP110097.015Anas_platyrhynchos
ENSMUSG00000028034Fubp110092.880ENSACAG00000006310FUBP19686.804Anolis_carolinensis
ENSMUSG00000028034Fubp19975.568ENSACLG00000006708fubp17278.174Astatotilapia_calliptera
ENSMUSG00000028034Fubp110076.667ENSAMXG00000005525fubp16486.047Astyanax_mexicanus
ENSMUSG00000028034Fubp110097.863ENSCJAG00000007062FUBP110097.863Callithrix_jacchus
ENSMUSG00000028034Fubp110097.682ENSCAFG00000020361FUBP110097.682Canis_familiaris
ENSMUSG00000028034Fubp19898.630ENSTSYG00000000148FUBP110098.537Carlito_syrichta
ENSMUSG00000028034Fubp17197.802ENSCAPG00000011052-6798.168Cavia_aperea
ENSMUSG00000028034Fubp110097.987ENSCPOG00000002757FUBP110097.987Cavia_porcellus
ENSMUSG00000028034Fubp19997.163ENSCCAG00000036537FUBP110082.948Cebus_capucinus
ENSMUSG00000028034Fubp110097.863ENSCATG00000042126FUBP110097.863Cercocebus_atys
ENSMUSG00000028034Fubp110097.863ENSCLAG00000005621FUBP110099.359Chinchilla_lanigera
ENSMUSG00000028034Fubp110097.527ENSCSAG00000001402FUBP110097.527Chlorocebus_sabaeus
ENSMUSG00000028034Fubp110097.863ENSCHOG00000008177FUBP110097.863Choloepus_hoffmanni
ENSMUSG00000028034Fubp110098.624ENSCGRG00001007103Fubp110098.624Cricetulus_griseus_chok1gshd
ENSMUSG00000028034Fubp110099.329ENSCGRG00000003372Fubp110099.329Cricetulus_griseus_crigri
ENSMUSG00000028034Fubp19974.237ENSCSEG00000021412fubp16977.728Cynoglossus_semilaevis
ENSMUSG00000028034Fubp19975.954ENSCVAG00000014487fubp16779.510Cyprinodon_variegatus
ENSMUSG00000028034Fubp19975.330ENSDARG00000029248fubp19870.399Danio_rerio
ENSMUSG00000028034Fubp18866.463ENSDNOG00000034565-8373.171Dasypus_novemcinctus
ENSMUSG00000028034Fubp110097.710ENSDORG00000016534Fubp110097.710Dipodomys_ordii
ENSMUSG00000028034Fubp110091.830ENSETEG00000000948-6298.834Echinops_telfairi
ENSMUSG00000028034Fubp18346.847ENSEBUG00000016143fubp16458.462Eptatretus_burgeri
ENSMUSG00000028034Fubp199100.000ENSEEUG00000001287FUBP110084.885Erinaceus_europaeus
ENSMUSG00000028034Fubp19876.871ENSELUG00000007990fubp17075.109Esox_lucius
ENSMUSG00000028034Fubp19996.571ENSFALG00000005768FUBP19894.264Ficedula_albicollis
ENSMUSG00000028034Fubp110097.863ENSFDAG00000014210FUBP110099.315Fukomys_damarensis
ENSMUSG00000028034Fubp19975.954ENSFHEG00000005230fubp17079.287Fundulus_heteroclitus
ENSMUSG00000028034Fubp110066.462ENSGMOG00000003370fubp17069.690Gadus_morhua
ENSMUSG00000028034Fubp19996.768ENSGALG00000008939FUBP19996.393Gallus_gallus
ENSMUSG00000028034Fubp19974.206ENSGAFG00000020972fubp19178.032Gambusia_affinis
ENSMUSG00000028034Fubp19972.865ENSGACG00000016563fubp17076.106Gasterosteus_aculeatus
ENSMUSG00000028034Fubp19975.568ENSHBUG00000009835fubp18577.605Haplochromis_burtoni
ENSMUSG00000028034Fubp110098.024ENSHGLG00000008415-10099.359Heterocephalus_glaber_female
ENSMUSG00000028034Fubp110086.275ENSHGLG00000002808-7191.091Heterocephalus_glaber_female
ENSMUSG00000028034Fubp110086.275ENSHGLG00100001414-7191.759Heterocephalus_glaber_male
ENSMUSG00000028034Fubp110098.024ENSHGLG00100003417-10098.024Heterocephalus_glaber_male
ENSMUSG00000028034Fubp19972.626ENSHCOG00000000910fubp17075.541Hippocampus_comes
ENSMUSG00000028034Fubp19878.231ENSIPUG00000009896fubp17078.319Ictalurus_punctatus
ENSMUSG00000028034Fubp110098.176ENSSTOG00000014312FUBP110098.176Ictidomys_tridecemlineatus
ENSMUSG00000028034Fubp110097.833ENSJJAG00000020069Fubp110099.315Jaculus_jaculus
ENSMUSG00000028034Fubp19976.336ENSKMAG00000018897fubp16779.733Kryptolebias_marmoratus
ENSMUSG00000028034Fubp19971.587ENSLBEG00000012700fubp17275.375Labrus_bergylta
ENSMUSG00000028034Fubp19976.417ENSLOCG00000003745fubp19274.587Lepisosteus_oculatus
ENSMUSG00000028034Fubp110097.735ENSLAFG00000003273FUBP110097.297Loxodonta_africana
ENSMUSG00000028034Fubp110097.863ENSMFAG00000031825FUBP110097.863Macaca_fascicularis
ENSMUSG00000028034Fubp110097.863ENSMMUG00000002899FUBP110097.863Macaca_mulatta
ENSMUSG00000028034Fubp110097.863ENSMNEG00000045212FUBP110097.863Macaca_nemestrina
ENSMUSG00000028034Fubp19974.766ENSMAMG00000007489fubp16877.826Mastacembelus_armatus
ENSMUSG00000028034Fubp19975.568ENSMZEG00005024298fubp17078.808Maylandia_zebra
ENSMUSG00000028034Fubp19397.336ENSMGAG00000009424FUBP110096.217Meleagris_gallopavo
ENSMUSG00000028034Fubp110098.658ENSMAUG00000016428Fubp110098.658Mesocricetus_auratus
ENSMUSG00000028034Fubp110098.930ENSMOCG00000014751Fubp110098.930Microtus_ochrogaster
ENSMUSG00000028034Fubp19868.243ENSMMOG00000019463fubp16482.535Mola_mola
ENSMUSG00000028034Fubp19594.074ENSMODG00000020804FUBP110089.937Monodelphis_domestica
ENSMUSG00000028034Fubp19974.618ENSMALG00000015173fubp17077.728Monopterus_albus
ENSMUSG00000028034Fubp1100100.000MGP_CAROLIEiJ_G0025740Fubp1100100.000Mus_caroli
ENSMUSG00000028034Fubp110099.674MGP_PahariEiJ_G0027191Fubp110099.674Mus_pahari
ENSMUSG00000028034Fubp1100100.000MGP_SPRETEiJ_G0026693Fubp1100100.000Mus_spretus
ENSMUSG00000028034Fubp110096.486ENSMLUG00000014802FUBP110093.443Myotis_lucifugus
ENSMUSG00000028034Fubp110098.658ENSNGAG00000014302Fubp110098.658Nannospalax_galili
ENSMUSG00000028034Fubp19975.000ENSNBRG00000015099fubp17278.174Neolamprologus_brichardi
ENSMUSG00000028034Fubp19899.315ENSNLEG00000009772FUBP110094.216Nomascus_leucogenys
ENSMUSG00000028034Fubp19693.382ENSMEUG00000007917-7997.674Notamacropus_eugenii
ENSMUSG00000028034Fubp19997.143ENSOPRG00000001175FUBP19197.945Ochotona_princeps
ENSMUSG00000028034Fubp110070.172ENSODEG00000003657-10065.732Octodon_degus
ENSMUSG00000028034Fubp110098.015ENSODEG00000002600-10099.315Octodon_degus
ENSMUSG00000028034Fubp19975.665ENSONIG00000018381fubp16978.808Oreochromis_niloticus
ENSMUSG00000028034Fubp19897.945ENSOANG00000009777FUBP19991.626Ornithorhynchus_anatinus
ENSMUSG00000028034Fubp19973.180ENSORLG00000003540fubp17178.174Oryzias_latipes
ENSMUSG00000028034Fubp19974.904ENSORLG00020005908fubp17077.506Oryzias_latipes_hni
ENSMUSG00000028034Fubp19974.904ENSORLG00015008779fubp16978.619Oryzias_latipes_hsok
ENSMUSG00000028034Fubp19973.180ENSOMEG00000021943fubp17076.667Oryzias_melastigma
ENSMUSG00000028034Fubp19899.315ENSOGAG00000014233FUBP110094.048Otolemur_garnettii
ENSMUSG00000028034Fubp110097.987ENSOARG00000013259FUBP110094.444Ovis_aries
ENSMUSG00000028034Fubp110098.168ENSPPRG00000000413FUBP110098.168Panthera_pardus
ENSMUSG00000028034Fubp110098.168ENSPTIG00000019450FUBP110098.168Panthera_tigris_altaica
ENSMUSG00000028034Fubp19895.918ENSPSIG00000012965FUBP110095.798Pelodiscus_sinensis
ENSMUSG00000028034Fubp19973.674ENSPMGG00000009060fubp17176.923Periophthalmus_magnuspinnatus
ENSMUSG00000028034Fubp110098.624ENSPEMG00000021802Fubp110098.630Peromyscus_maniculatus_bairdii
ENSMUSG00000028034Fubp18955.224ENSPMAG00000001644-9162.946Petromyzon_marinus
ENSMUSG00000028034Fubp19975.954ENSPFOG00000000238fubp16779.287Poecilia_formosa
ENSMUSG00000028034Fubp19975.954ENSPLAG00000021170fubp17279.287Poecilia_latipinna
ENSMUSG00000028034Fubp19975.954ENSPMEG00000004747fubp17379.287Poecilia_mexicana
ENSMUSG00000028034Fubp19975.954ENSPREG00000017911fubp17079.287Poecilia_reticulata
ENSMUSG00000028034Fubp110090.968ENSPPYG00000001219-7098.048Pongo_abelii
ENSMUSG00000028034Fubp110097.859ENSPCAG00000012617FUBP110097.859Procavia_capensis
ENSMUSG00000028034Fubp110098.168ENSPCOG00000024974FUBP110098.168Propithecus_coquereli
ENSMUSG00000028034Fubp19997.143ENSPVAG00000014637FUBP110093.893Pteropus_vampyrus
ENSMUSG00000028034Fubp19975.568ENSPNYG00000004552fubp17378.667Pundamilia_nyererei
ENSMUSG00000028034Fubp19878.912ENSPNAG00000016207fubp18777.462Pygocentrus_nattereri
ENSMUSG00000028034Fubp110099.221ENSRNOG00000043370Fubp110099.221Rattus_norvegicus
ENSMUSG00000028034Fubp110097.527ENSRBIG00000042950FUBP110097.527Rhinopithecus_bieti
ENSMUSG00000028034Fubp110097.527ENSRROG00000043534FUBP110097.527Rhinopithecus_roxellana
ENSMUSG00000028034Fubp110097.863ENSSBOG00000027299FUBP110097.863Saimiri_boliviensis_boliviensis
ENSMUSG00000028034Fubp110096.644ENSSHAG00000005367FUBP110097.297Sarcophilus_harrisii
ENSMUSG00000028034Fubp19978.476ENSSFOG00015010213fubp17079.601Scleropages_formosus
ENSMUSG00000028034Fubp19972.968ENSSMAG00000012029fubp16576.923Scophthalmus_maximus
ENSMUSG00000028034Fubp19974.296ENSSDUG00000007383fubp16877.174Seriola_dumerili
ENSMUSG00000028034Fubp19974.296ENSSLDG00000022863fubp17377.174Seriola_lalandi_dorsalis
ENSMUSG00000028034Fubp110094.982ENSSARG00000011730FUBP15798.969Sorex_araneus
ENSMUSG00000028034Fubp110095.130ENSSPUG00000008389FUBP110085.109Sphenodon_punctatus
ENSMUSG00000028034Fubp19975.763ENSSPAG00000010161fubp16977.951Stegastes_partitus
ENSMUSG00000028034Fubp19495.581ENSTGUG00000006841FUBP110095.895Taeniopygia_guttata
ENSMUSG00000028034Fubp19975.479ENSTRUG00000004615fubp16578.619Takifugu_rubripes
ENSMUSG00000028034Fubp16948.800ENSTNIG00000003986-5181.818Tetraodon_nigroviridis
ENSMUSG00000028034Fubp16284.459ENSTNIG00000019815-8884.459Tetraodon_nigroviridis
ENSMUSG00000028034Fubp18399.405ENSTBEG00000017333FUBP16799.405Tupaia_belangeri
ENSMUSG00000028034Fubp110098.015ENSTTRG00000000096FUBP110098.015Tursiops_truncatus
ENSMUSG00000028034Fubp110097.987ENSVPAG00000004709FUBP110098.000Vicugna_pacos
ENSMUSG00000028034Fubp19970.802ENSXCOG00000019354fubp17277.728Xiphophorus_couchianus
ENSMUSG00000028034Fubp19975.763ENSXMAG00000007168fubp17379.065Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001228DNA-binding transcription activator activity, RNA polymerase II-specific18836447.IDAFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding12819782.IPIFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0006357regulation of transcription by RNA polymerase II26095368.IMPProcess
GO:0010628positive regulation of gene expression-ISOProcess
GO:0045202synapse16452087.EXPComponent
GO:0045202synapse16452087.IDAComponent
GO:0048103somatic stem cell division26095368.IMPProcess
GO:0048588developmental cell growth26095368.IMPProcess
GO:0071425hematopoietic stem cell proliferation26095368.IMPProcess
GO:1900149positive regulation of Schwann cell migration-ISOProcess
GO:1990837sequence-specific double-stranded DNA binding18836447.IDAFunction

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