EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028089 (Gene tree)
Gene ID: 68058
Gene Symbol: Chd1l
Alias: 4432404A22Rik|Snf2p
Full Name: chromodomain helicase DNA binding protein 1-like
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 49462 bases
Position: chr3:97560742-97610203
Accession: 1915308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000029730	ResIII	PF04851.15	1.6e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000029730	-	3008	XM_017319699	ENSMUSP00000029730	900 (aa)	XP_017175188	Q9CXF7
ENSMUST00000197304	-	2941	-	-	- (aa)	-	-
ENSMUST00000195962	-	501	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000028089	Chd1l	51	35.135	ENSMUSG00000029920	Smarcad1	50	35.135
ENSMUSG00000028089	Chd1l	62	43.419	ENSMUSG00000031099	Smarca1	75	42.044
ENSMUSG00000028089	Chd1l	50	42.798	ENSMUSG00000024921	Smarca2	51	45.763
ENSMUSG00000028089	Chd1l	50	32.657	ENSMUSG00000021470	Ercc6l2	79	30.021
ENSMUSG00000028089	Chd1l	50	30.584	ENSMUSG00000028702	Rad54l	66	30.785
ENSMUSG00000028089	Chd1l	54	39.054	ENSMUSG00000025001	Hells	69	39.054
ENSMUSG00000028089	Chd1l	51	42.593	ENSMUSG00000056608	Chd9	55	42.593
ENSMUSG00000028089	Chd1l	50	30.528	ENSMUSG00000078773	Rad54b	56	30.528
ENSMUSG00000028089	Chd1l	64	42.568	ENSMUSG00000031715	Smarca5	55	42.424

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028089	Chd1l	99	86.176	ENSG00000131778	CHD1L	100	86.284	Homo_sapiens
ENSMUSG00000028089	Chd1l	96	64.631	ENSAPOG00000001539	chd1l	98	64.747	Acanthochromis_polyacanthus
ENSMUSG00000028089	Chd1l	99	84.504	ENSAMEG00000017063	CHD1L	99	84.169	Ailuropoda_melanoleuca
ENSMUSG00000028089	Chd1l	95	66.316	ENSACIG00000001164	chd1l	97	66.317	Amphilophus_citrinellus
ENSMUSG00000028089	Chd1l	97	64.679	ENSAOCG00000014510	chd1l	85	65.202	Amphiprion_ocellaris
ENSMUSG00000028089	Chd1l	96	62.442	ENSAPEG00000017573	chd1l	94	62.442	Amphiprion_percula
ENSMUSG00000028089	Chd1l	98	61.547	ENSAPEG00000017450	chd1l	94	63.213	Amphiprion_percula
ENSMUSG00000028089	Chd1l	98	64.221	ENSATEG00000013058	chd1l	92	65.549	Anabas_testudineus
ENSMUSG00000028089	Chd1l	96	71.478	ENSAPLG00000009976	CHD1L	96	71.707	Anas_platyrhynchos
ENSMUSG00000028089	Chd1l	96	68.326	ENSACAG00000017686	CHD1L	96	68.552	Anolis_carolinensis
ENSMUSG00000028089	Chd1l	97	86.689	ENSANAG00000024347	CHD1L	97	86.168	Aotus_nancymaae
ENSMUSG00000028089	Chd1l	98	64.579	ENSACLG00000019304	chd1l	96	64.564	Astatotilapia_calliptera
ENSMUSG00000028089	Chd1l	99	59.106	ENSAMXG00000012367	chd1l	87	59.209	Astyanax_mexicanus
ENSMUSG00000028089	Chd1l	98	86.266	ENSBTAG00000020831	CHD1L	97	86.266	Bos_taurus
ENSMUSG00000028089	Chd1l	99	85.523	ENSCJAG00000002406	CHD1L	99	85.078	Callithrix_jacchus
ENSMUSG00000028089	Chd1l	99	81.747	ENSCAFG00000010944	CHD1L	97	81.674	Canis_familiaris
ENSMUSG00000028089	Chd1l	99	84.193	ENSCAFG00020020121	CHD1L	98	83.915	Canis_lupus_dingo
ENSMUSG00000028089	Chd1l	99	85.011	ENSCHIG00000013871	CHD1L	97	86.152	Capra_hircus
ENSMUSG00000028089	Chd1l	96	87.500	ENSTSYG00000003005	CHD1L	100	87.037	Carlito_syrichta
ENSMUSG00000028089	Chd1l	98	84.086	ENSCPOG00000009000	CHD1L	98	84.086	Cavia_porcellus
ENSMUSG00000028089	Chd1l	99	82.739	ENSCCAG00000036079	CHD1L	99	82.294	Cebus_capucinus
ENSMUSG00000028089	Chd1l	98	87.386	ENSCATG00000031044	CHD1L	99	86.414	Cercocebus_atys
ENSMUSG00000028089	Chd1l	98	84.989	ENSCLAG00000000880	CHD1L	100	85.493	Chinchilla_lanigera
ENSMUSG00000028089	Chd1l	98	87.500	ENSCSAG00000018386	CHD1L	97	87.174	Chlorocebus_sabaeus
ENSMUSG00000028089	Chd1l	98	73.869	ENSCPBG00000002600	CHD1L	98	74.095	Chrysemys_picta_bellii
ENSMUSG00000028089	Chd1l	99	85.078	ENSCANG00000020239	CHD1L	99	84.744	Colobus_angolensis_palliatus
ENSMUSG00000028089	Chd1l	98	89.456	ENSCGRG00001021624	Chd1l	98	89.116	Cricetulus_griseus_chok1gshd
ENSMUSG00000028089	Chd1l	93	89.762	ENSCGRG00000007554	Chd1l	98	89.405	Cricetulus_griseus_crigri
ENSMUSG00000028089	Chd1l	98	63.936	ENSCVAG00000002595	chd1l	90	63.837	Cyprinodon_variegatus
ENSMUSG00000028089	Chd1l	98	65.034	ENSDARG00000015471	chd1l	85	64.699	Danio_rerio
ENSMUSG00000028089	Chd1l	99	84.761	ENSDNOG00000019504	CHD1L	97	85.828	Dasypus_novemcinctus
ENSMUSG00000028089	Chd1l	100	80.884	ENSDORG00000013555	Chd1l	98	82.095	Dipodomys_ordii
ENSMUSG00000028089	Chd1l	89	76.614	ENSETEG00000008445	CHD1L	88	77.500	Echinops_telfairi
ENSMUSG00000028089	Chd1l	65	62.903	ENSEBUG00000005791	chd1l	75	76.596	Eptatretus_burgeri
ENSMUSG00000028089	Chd1l	99	85.106	ENSEASG00005007364	CHD1L	99	86.951	Equus_asinus_asinus
ENSMUSG00000028089	Chd1l	99	84.994	ENSECAG00000008915	CHD1L	99	86.829	Equus_caballus
ENSMUSG00000028089	Chd1l	96	55.353	ENSELUG00000016844	chd1l	84	54.413	Esox_lucius
ENSMUSG00000028089	Chd1l	98	84.371	ENSFCAG00000007777	CHD1L	97	84.711	Felis_catus
ENSMUSG00000028089	Chd1l	99	69.967	ENSFALG00000006087	CHD1L	97	70.767	Ficedula_albicollis
ENSMUSG00000028089	Chd1l	96	85.880	ENSFDAG00000012431	CHD1L	100	86.806	Fukomys_damarensis
ENSMUSG00000028089	Chd1l	98	62.896	ENSFHEG00000012420	chd1l	85	64.360	Fundulus_heteroclitus
ENSMUSG00000028089	Chd1l	99	70.201	ENSGALG00000015038	CHD1L	97	70.475	Gallus_gallus
ENSMUSG00000028089	Chd1l	98	64.036	ENSGAFG00000018198	chd1l	97	61.485	Gambusia_affinis
ENSMUSG00000028089	Chd1l	58	66.412	ENSGACG00000014042	chd1l	98	66.342	Gasterosteus_aculeatus
ENSMUSG00000028089	Chd1l	95	74.971	ENSGAGG00000014432	CHD1L	96	74.971	Gopherus_agassizii
ENSMUSG00000028089	Chd1l	99	85.746	ENSGGOG00000001067	CHD1L	99	85.301	Gorilla_gorilla
ENSMUSG00000028089	Chd1l	98	64.465	ENSHBUG00000007464	chd1l	96	64.665	Haplochromis_burtoni
ENSMUSG00000028089	Chd1l	98	84.199	ENSHGLG00000008933	CHD1L	100	84.496	Heterocephalus_glaber_female
ENSMUSG00000028089	Chd1l	94	84.005	ENSHGLG00100007155	CHD1L	100	84.339	Heterocephalus_glaber_male
ENSMUSG00000028089	Chd1l	94	62.648	ENSHCOG00000012787	chd1l	92	62.530	Hippocampus_comes
ENSMUSG00000028089	Chd1l	99	59.441	ENSIPUG00000022617	chd1l	86	59.752	Ictalurus_punctatus
ENSMUSG00000028089	Chd1l	100	76.190	ENSSTOG00000007032	CHD1L	98	77.088	Ictidomys_tridecemlineatus
ENSMUSG00000028089	Chd1l	99	62.946	ENSKMAG00000014358	chd1l	86	64.278	Kryptolebias_marmoratus
ENSMUSG00000028089	Chd1l	97	63.616	ENSLBEG00000023845	chd1l	97	63.064	Labrus_bergylta
ENSMUSG00000028089	Chd1l	96	63.968	ENSLACG00000006262	CHD1L	85	64.196	Latimeria_chalumnae
ENSMUSG00000028089	Chd1l	95	70.595	ENSLOCG00000010574	chd1l	85	70.534	Lepisosteus_oculatus
ENSMUSG00000028089	Chd1l	96	85.599	ENSLAFG00000018136	CHD1L	99	86.353	Loxodonta_africana
ENSMUSG00000028089	Chd1l	94	86.839	ENSMFAG00000043562	CHD1L	100	87.097	Macaca_fascicularis
ENSMUSG00000028089	Chd1l	98	87.045	ENSMMUG00000009024	CHD1L	99	86.080	Macaca_mulatta
ENSMUSG00000028089	Chd1l	98	87.159	ENSMNEG00000039905	CHD1L	99	86.192	Macaca_nemestrina
ENSMUSG00000028089	Chd1l	98	87.386	ENSMLEG00000030900	CHD1L	99	86.414	Mandrillus_leucophaeus
ENSMUSG00000028089	Chd1l	97	62.971	ENSMAMG00000012822	chd1l	98	61.778	Mastacembelus_armatus
ENSMUSG00000028089	Chd1l	98	64.579	ENSMZEG00005020830	chd1l	86	65.087	Maylandia_zebra
ENSMUSG00000028089	Chd1l	96	70.418	ENSMGAG00000014304	CHD1L	98	70.926	Meleagris_gallopavo
ENSMUSG00000028089	Chd1l	98	86.735	ENSMICG00000002497	CHD1L	97	86.281	Microcebus_murinus
ENSMUSG00000028089	Chd1l	100	90.698	ENSMOCG00000006305	Chd1l	100	90.698	Microtus_ochrogaster
ENSMUSG00000028089	Chd1l	96	61.361	ENSMMOG00000005964	chd1l	90	61.246	Mola_mola
ENSMUSG00000028089	Chd1l	99	77.531	ENSMODG00000018717	CHD1L	97	78.685	Monodelphis_domestica
ENSMUSG00000028089	Chd1l	98	63.337	ENSMALG00000014675	chd1l	85	64.393	Monopterus_albus
ENSMUSG00000028089	Chd1l	100	98.557	MGP_CAROLIEiJ_G0025401	Chd1l	100	98.557	Mus_caroli
ENSMUSG00000028089	Chd1l	100	96.231	MGP_PahariEiJ_G0026845	Chd1l	100	96.231	Mus_pahari
ENSMUSG00000028089	Chd1l	100	99.000	MGP_SPRETEiJ_G0026347	Chd1l	100	99.000	Mus_spretus
ENSMUSG00000028089	Chd1l	99	83.333	ENSMPUG00000000615	CHD1L	97	83.842	Mustela_putorius_furo
ENSMUSG00000028089	Chd1l	98	82.227	ENSMLUG00000007573	CHD1L	97	82.227	Myotis_lucifugus
ENSMUSG00000028089	Chd1l	97	85.455	ENSNGAG00000000908	Chd1l	99	85.455	Nannospalax_galili
ENSMUSG00000028089	Chd1l	97	62.386	ENSNBRG00000006021	chd1l	93	63.134	Neolamprologus_brichardi
ENSMUSG00000028089	Chd1l	99	85.523	ENSNLEG00000000179	CHD1L	99	85.189	Nomascus_leucogenys
ENSMUSG00000028089	Chd1l	95	73.574	ENSOPRG00000006973	CHD1L	99	73.765	Ochotona_princeps
ENSMUSG00000028089	Chd1l	100	80.442	ENSODEG00000002494	CHD1L	100	81.788	Octodon_degus
ENSMUSG00000028089	Chd1l	98	64.512	ENSONIG00000003183	chd1l	87	65.318	Oreochromis_niloticus
ENSMUSG00000028089	Chd1l	86	71.264	ENSOANG00000003068	CHD1L	93	71.137	Ornithorhynchus_anatinus
ENSMUSG00000028089	Chd1l	100	80.416	ENSOCUG00000009336	CHD1L	99	80.088	Oryctolagus_cuniculus
ENSMUSG00000028089	Chd1l	97	62.671	ENSORLG00000003673	chd1l	93	63.477	Oryzias_latipes
ENSMUSG00000028089	Chd1l	97	62.916	ENSORLG00020005123	chd1l	94	64.478	Oryzias_latipes_hni
ENSMUSG00000028089	Chd1l	98	62.614	ENSORLG00015001680	chd1l	99	61.948	Oryzias_latipes_hsok
ENSMUSG00000028089	Chd1l	85	57.189	ENSOMEG00000006109	chd1l	84	58.609	Oryzias_melastigma
ENSMUSG00000028089	Chd1l	99	83.667	ENSOGAG00000008775	CHD1L	99	83.222	Otolemur_garnettii
ENSMUSG00000028089	Chd1l	99	84.710	ENSOARG00000020547	CHD1L	98	87.044	Ovis_aries
ENSMUSG00000028089	Chd1l	99	83.612	ENSPPAG00000039193	CHD1L	98	87.179	Pan_paniscus
ENSMUSG00000028089	Chd1l	98	84.824	ENSPPRG00000010258	CHD1L	97	84.711	Panthera_pardus
ENSMUSG00000028089	Chd1l	98	86.705	ENSPTRG00000001220	CHD1L	97	86.250	Pan_troglodytes
ENSMUSG00000028089	Chd1l	98	87.386	ENSPANG00000009170	CHD1L	99	86.414	Papio_anubis
ENSMUSG00000028089	Chd1l	99	64.621	ENSPKIG00000022166	chd1l	97	63.560	Paramormyrops_kingsleyae
ENSMUSG00000028089	Chd1l	98	74.292	ENSPSIG00000012595	CHD1L	97	74.292	Pelodiscus_sinensis
ENSMUSG00000028089	Chd1l	99	88.789	ENSPEMG00000013528	Chd1l	98	89.052	Peromyscus_maniculatus_bairdii
ENSMUSG00000028089	Chd1l	93	79.211	ENSPCIG00000030409	CHD1L	98	80.610	Phascolarctos_cinereus
ENSMUSG00000028089	Chd1l	98	64.414	ENSPFOG00000015948	chd1l	84	64.908	Poecilia_formosa
ENSMUSG00000028089	Chd1l	98	64.819	ENSPLAG00000015145	chd1l	96	64.179	Poecilia_latipinna
ENSMUSG00000028089	Chd1l	98	64.286	ENSPMEG00000008720	chd1l	90	65.092	Poecilia_mexicana
ENSMUSG00000028089	Chd1l	96	63.206	ENSPREG00000017885	chd1l	97	63.176	Poecilia_reticulata
ENSMUSG00000028089	Chd1l	98	86.947	ENSPPYG00000000946	CHD1L	97	86.493	Pongo_abelii
ENSMUSG00000028089	Chd1l	98	73.952	ENSPCAG00000005959	CHD1L	97	74.632	Procavia_capensis
ENSMUSG00000028089	Chd1l	95	79.206	ENSPVAG00000006084	CHD1L	99	79.481	Pteropus_vampyrus
ENSMUSG00000028089	Chd1l	98	63.851	ENSPNYG00000013001	chd1l	95	64.781	Pundamilia_nyererei
ENSMUSG00000028089	Chd1l	98	64.673	ENSPNAG00000011881	chd1l	85	64.972	Pygocentrus_nattereri
ENSMUSG00000028089	Chd1l	100	93.370	ENSRNOG00000017669	Chd1l	100	93.702	Rattus_norvegicus
ENSMUSG00000028089	Chd1l	99	85.189	ENSRBIG00000041272	CHD1L	99	84.855	Rhinopithecus_bieti
ENSMUSG00000028089	Chd1l	97	85.469	ENSRROG00000041354	CHD1L	97	85.046	Rhinopithecus_roxellana
ENSMUSG00000028089	Chd1l	98	75.425	ENSSHAG00000017395	CHD1L	97	75.991	Sarcophilus_harrisii
ENSMUSG00000028089	Chd1l	96	65.589	ENSSFOG00015003649	chd1l	98	63.224	Scleropages_formosus
ENSMUSG00000028089	Chd1l	97	61.695	ENSSMAG00000019377	chd1l	94	61.253	Scophthalmus_maximus
ENSMUSG00000028089	Chd1l	95	63.869	ENSSDUG00000019831	chd1l	94	64.202	Seriola_dumerili
ENSMUSG00000028089	Chd1l	96	63.668	ENSSLDG00000012714	chd1l	95	63.879	Seriola_lalandi_dorsalis
ENSMUSG00000028089	Chd1l	99	69.855	ENSSPUG00000016865	CHD1L	98	71.574	Sphenodon_punctatus
ENSMUSG00000028089	Chd1l	97	64.679	ENSSPAG00000017653	chd1l	90	65.087	Stegastes_partitus
ENSMUSG00000028089	Chd1l	98	81.982	ENSSSCG00000006701	CHD1L	97	83.624	Sus_scrofa
ENSMUSG00000028089	Chd1l	96	72.190	ENSTGUG00000013392	-	98	72.190	Taeniopygia_guttata
ENSMUSG00000028089	Chd1l	95	59.419	ENSTNIG00000004902	chd1l	99	59.070	Tetraodon_nigroviridis
ENSMUSG00000028089	Chd1l	96	82.333	ENSTTRG00000011711	CHD1L	98	83.157	Tursiops_truncatus
ENSMUSG00000028089	Chd1l	99	83.612	ENSUAMG00000021991	CHD1L	99	83.389	Ursus_americanus
ENSMUSG00000028089	Chd1l	99	83.389	ENSUMAG00000009733	CHD1L	99	83.055	Ursus_maritimus
ENSMUSG00000028089	Chd1l	99	83.630	ENSVVUG00000007316	CHD1L	92	85.417	Vulpes_vulpes
ENSMUSG00000028089	Chd1l	97	62.089	ENSXCOG00000008336	chd1l	84	62.702	Xiphophorus_couchianus
ENSMUSG00000028089	Chd1l	98	64.553	ENSXMAG00000015898	chd1l	96	60.329	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	ISO	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	-	ISO	Function