EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028099 (Gene tree)
Gene ID: 74414
Gene Symbol: Polr3c
Alias: 4933407E01Rik|RPC3|RPC62
Full Name: polymerase (RNA) III (DNA directed) polypeptide C
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 16139 bases
Position: chr3:96711490-96727628
Accession: 1921664
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000029741	RNA_pol_Rpc82	PF05645.13	3.4e-43	1	1
ENSMUSP00000122435	RNA_pol_Rpc82	PF05645.13	3.4e-43	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137009	-	1628	-	-	- (aa)	-	-
ENSMUST00000128918	-	662	-	ENSMUSP00000119236	193 (aa)	-	F6QK97
ENSMUST00000125183	-	923	-	ENSMUSP00000123513	139 (aa)	-	D3YYS2
ENSMUST00000154679	-	2406	XM_006502187	ENSMUSP00000122435	533 (aa)	XP_006502250	Q9D483
ENSMUST00000029741	-	2390	XM_006502188	ENSMUSP00000029741	533 (aa)	XP_006502251	Q9D483
ENSMUST00000141377	-	808	-	ENSMUSP00000115300	202 (aa)	-	Q9D483

Gene Model

Click here to download ENSMUSG00000028099's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG
mmu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028099's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028099	Polr3c	100	93.820	ENSG00000186141	POLR3C	100	93.820	Homo_sapiens
ENSMUSG00000028099	Polr3c	99	63.352	ENSAPOG00000008722	polr3c	99	63.536	Acanthochromis_polyacanthus
ENSMUSG00000028099	Polr3c	100	93.446	ENSAMEG00000017531	POLR3C	100	93.446	Ailuropoda_melanoleuca
ENSMUSG00000028099	Polr3c	99	64.117	ENSACIG00000008064	polr3c	99	64.117	Amphilophus_citrinellus
ENSMUSG00000028099	Polr3c	99	65.038	ENSAOCG00000011695	polr3c	99	65.038	Amphiprion_ocellaris
ENSMUSG00000028099	Polr3c	99	65.038	ENSAPEG00000004426	polr3c	99	65.038	Amphiprion_percula
ENSMUSG00000028099	Polr3c	99	64.750	ENSATEG00000023618	polr3c	92	64.935	Anabas_testudineus
ENSMUSG00000028099	Polr3c	99	93.621	ENSANAG00000036434	POLR3C	99	93.621	Aotus_nancymaae
ENSMUSG00000028099	Polr3c	99	63.187	ENSACLG00000019970	polr3c	99	63.187	Astatotilapia_calliptera
ENSMUSG00000028099	Polr3c	99	63.469	ENSAMXG00000008273	polr3c	99	64.074	Astyanax_mexicanus
ENSMUSG00000028099	Polr3c	99	93.246	ENSBTAG00000021637	POLR3C	100	93.246	Bos_taurus
ENSMUSG00000028099	Polr3c	99	93.621	ENSCJAG00000002314	POLR3C	99	93.621	Callithrix_jacchus
ENSMUSG00000028099	Polr3c	100	93.071	ENSCAFG00000011257	POLR3C	100	93.071	Canis_familiaris
ENSMUSG00000028099	Polr3c	95	92.717	ENSCAFG00020020066	POLR3C	99	92.717	Canis_lupus_dingo
ENSMUSG00000028099	Polr3c	100	93.633	ENSCHIG00000022431	POLR3C	100	93.633	Capra_hircus
ENSMUSG00000028099	Polr3c	100	94.195	ENSTSYG00000002292	POLR3C	100	94.195	Carlito_syrichta
ENSMUSG00000028099	Polr3c	95	71.795	ENSCAPG00000011559	POLR3C	100	71.795	Cavia_aperea
ENSMUSG00000028099	Polr3c	100	91.760	ENSCPOG00000004654	POLR3C	100	91.760	Cavia_porcellus
ENSMUSG00000028099	Polr3c	99	93.621	ENSCCAG00000027077	POLR3C	99	93.621	Cebus_capucinus
ENSMUSG00000028099	Polr3c	100	93.820	ENSCATG00000040166	POLR3C	100	93.820	Cercocebus_atys
ENSMUSG00000028099	Polr3c	90	91.797	ENSCLAG00000001652	POLR3C	100	91.797	Chinchilla_lanigera
ENSMUSG00000028099	Polr3c	100	94.195	ENSCSAG00000001762	POLR3C	100	94.195	Chlorocebus_sabaeus
ENSMUSG00000028099	Polr3c	99	91.557	ENSCHOG00000006911	POLR3C	99	91.557	Choloepus_hoffmanni
ENSMUSG00000028099	Polr3c	99	85.553	ENSCPBG00000007883	POLR3C	99	85.553	Chrysemys_picta_bellii
ENSMUSG00000028099	Polr3c	99	47.180	ENSCING00000007024	-	99	47.180	Ciona_intestinalis
ENSMUSG00000028099	Polr3c	99	47.092	ENSCSAVG00000008586	-	99	47.092	Ciona_savignyi
ENSMUSG00000028099	Polr3c	100	93.820	ENSCANG00000032538	POLR3C	100	93.820	Colobus_angolensis_palliatus
ENSMUSG00000028099	Polr3c	100	95.872	ENSCGRG00001005471	Polr3c	100	95.872	Cricetulus_griseus_chok1gshd
ENSMUSG00000028099	Polr3c	100	95.872	ENSCGRG00000016787	Polr3c	100	95.872	Cricetulus_griseus_crigri
ENSMUSG00000028099	Polr3c	99	64.207	ENSCSEG00000002425	polr3c	99	65.121	Cynoglossus_semilaevis
ENSMUSG00000028099	Polr3c	99	62.387	ENSCVAG00000022458	polr3c	99	62.956	Cyprinodon_variegatus
ENSMUSG00000028099	Polr3c	99	62.387	ENSCVAG00000009443	polr3c	99	62.956	Cyprinodon_variegatus
ENSMUSG00000028099	Polr3c	99	66.294	ENSDARG00000057562	polr3c	99	66.294	Danio_rerio
ENSMUSG00000028099	Polr3c	72	94.256	ENSDNOG00000012149	POLR3C	100	94.256	Dasypus_novemcinctus
ENSMUSG00000028099	Polr3c	99	93.421	ENSDORG00000013430	Polr3c	99	93.421	Dipodomys_ordii
ENSMUSG00000028099	Polr3c	97	33.905	FBgn0038057	CG12267	96	33.905	Drosophila_melanogaster
ENSMUSG00000028099	Polr3c	100	81.648	ENSETEG00000017696	POLR3C	100	81.648	Echinops_telfairi
ENSMUSG00000028099	Polr3c	100	93.820	ENSEASG00005007417	POLR3C	100	93.820	Equus_asinus_asinus
ENSMUSG00000028099	Polr3c	100	91.573	ENSECAG00000023713	POLR3C	100	91.573	Equus_caballus
ENSMUSG00000028099	Polr3c	99	88.534	ENSEEUG00000011124	POLR3C	99	88.534	Erinaceus_europaeus
ENSMUSG00000028099	Polr3c	99	66.790	ENSELUG00000013209	polr3c	99	66.790	Esox_lucius
ENSMUSG00000028099	Polr3c	100	93.446	ENSFCAG00000013360	POLR3C	100	93.446	Felis_catus
ENSMUSG00000028099	Polr3c	100	91.386	ENSFDAG00000021078	POLR3C	100	91.386	Fukomys_damarensis
ENSMUSG00000028099	Polr3c	99	63.553	ENSFHEG00000000872	polr3c	99	63.736	Fundulus_heteroclitus
ENSMUSG00000028099	Polr3c	99	62.340	ENSGMOG00000018937	polr3c	99	62.868	Gadus_morhua
ENSMUSG00000028099	Polr3c	90	73.864	ENSGALG00000052515	-	100	77.778	Gallus_gallus
ENSMUSG00000028099	Polr3c	99	62.455	ENSGAFG00000014721	polr3c	99	63.437	Gambusia_affinis
ENSMUSG00000028099	Polr3c	99	64.353	ENSGACG00000011829	polr3c	99	64.540	Gasterosteus_aculeatus
ENSMUSG00000028099	Polr3c	99	84.991	ENSGAGG00000010176	POLR3C	99	84.991	Gopherus_agassizii
ENSMUSG00000028099	Polr3c	100	93.446	ENSGGOG00000007279	POLR3C	100	93.446	Gorilla_gorilla
ENSMUSG00000028099	Polr3c	99	63.370	ENSHBUG00000003619	polr3c	99	63.370	Haplochromis_burtoni
ENSMUSG00000028099	Polr3c	100	91.011	ENSHGLG00000014978	POLR3C	100	91.011	Heterocephalus_glaber_female
ENSMUSG00000028099	Polr3c	100	91.011	ENSHGLG00100015620	POLR3C	100	91.011	Heterocephalus_glaber_male
ENSMUSG00000028099	Polr3c	99	64.618	ENSHCOG00000000823	polr3c	99	64.618	Hippocampus_comes
ENSMUSG00000028099	Polr3c	99	64.587	ENSIPUG00000008657	polr3c	99	65.498	Ictalurus_punctatus
ENSMUSG00000028099	Polr3c	100	94.195	ENSSTOG00000014601	POLR3C	100	94.195	Ictidomys_tridecemlineatus
ENSMUSG00000028099	Polr3c	100	93.809	ENSJJAG00000011447	Polr3c	100	93.809	Jaculus_jaculus
ENSMUSG00000028099	Polr3c	99	62.274	ENSKMAG00000001574	polr3c	99	64.273	Kryptolebias_marmoratus
ENSMUSG00000028099	Polr3c	99	63.853	ENSLBEG00000026567	polr3c	99	63.853	Labrus_bergylta
ENSMUSG00000028099	Polr3c	99	72.881	ENSLACG00000017216	POLR3C	99	73.070	Latimeria_chalumnae
ENSMUSG00000028099	Polr3c	99	59.444	ENSLOCG00000006400	polr3c	99	59.444	Lepisosteus_oculatus
ENSMUSG00000028099	Polr3c	99	93.809	ENSLAFG00000029485	POLR3C	100	93.809	Loxodonta_africana
ENSMUSG00000028099	Polr3c	100	94.007	ENSMFAG00000040338	POLR3C	100	94.007	Macaca_fascicularis
ENSMUSG00000028099	Polr3c	100	94.007	ENSMMUG00000016735	POLR3C	100	94.007	Macaca_mulatta
ENSMUSG00000028099	Polr3c	100	94.007	ENSMNEG00000040944	POLR3C	100	94.007	Macaca_nemestrina
ENSMUSG00000028099	Polr3c	100	94.007	ENSMLEG00000031091	POLR3C	100	94.007	Mandrillus_leucophaeus
ENSMUSG00000028099	Polr3c	99	64.220	ENSMAMG00000014770	polr3c	99	64.220	Mastacembelus_armatus
ENSMUSG00000028099	Polr3c	99	63.553	ENSMZEG00005015882	polr3c	99	63.553	Maylandia_zebra
ENSMUSG00000028099	Polr3c	91	78.531	ENSMAUG00000021521	-	98	78.935	Mesocricetus_auratus
ENSMUSG00000028099	Polr3c	100	96.248	ENSMAUG00000001454	-	100	96.248	Mesocricetus_auratus
ENSMUSG00000028099	Polr3c	100	93.633	ENSMICG00000034253	POLR3C	100	93.633	Microcebus_murinus
ENSMUSG00000028099	Polr3c	99	87.640	ENSMOCG00000000997	Polr3c	99	87.640	Microtus_ochrogaster
ENSMUSG00000028099	Polr3c	99	65.804	ENSMMOG00000003989	polr3c	99	65.804	Mola_mola
ENSMUSG00000028099	Polr3c	99	88.951	ENSMODG00000018745	-	74	88.951	Monodelphis_domestica
ENSMUSG00000028099	Polr3c	51	79.798	ENSMODG00000024808	-	100	79.798	Monodelphis_domestica
ENSMUSG00000028099	Polr3c	99	64.825	ENSMALG00000000156	polr3c	99	64.825	Monopterus_albus
ENSMUSG00000028099	Polr3c	100	99.062	MGP_CAROLIEiJ_G0025390	Polr3c	100	99.062	Mus_caroli
ENSMUSG00000028099	Polr3c	100	98.687	MGP_PahariEiJ_G0026835	Polr3c	100	98.687	Mus_pahari
ENSMUSG00000028099	Polr3c	100	98.687	MGP_SPRETEiJ_G0026337	Polr3c	100	99.479	Mus_spretus
ENSMUSG00000028099	Polr3c	100	93.258	ENSMPUG00000000656	POLR3C	100	93.258	Mustela_putorius_furo
ENSMUSG00000028099	Polr3c	100	90.672	ENSMLUG00000004060	POLR3C	100	90.672	Myotis_lucifugus
ENSMUSG00000028099	Polr3c	100	95.872	ENSNGAG00000013090	Polr3c	100	95.872	Nannospalax_galili
ENSMUSG00000028099	Polr3c	99	63.206	ENSNBRG00000003707	polr3c	99	63.553	Neolamprologus_brichardi
ENSMUSG00000028099	Polr3c	100	93.633	ENSNLEG00000005645	POLR3C	100	93.633	Nomascus_leucogenys
ENSMUSG00000028099	Polr3c	86	93.651	ENSMEUG00000012664	POLR3C	87	93.651	Notamacropus_eugenii
ENSMUSG00000028099	Polr3c	99	90.807	ENSOPRG00000004244	POLR3C	99	90.807	Ochotona_princeps
ENSMUSG00000028099	Polr3c	100	90.824	ENSODEG00000000304	POLR3C	100	90.824	Octodon_degus
ENSMUSG00000028099	Polr3c	99	63.919	ENSONIG00000006370	polr3c	99	63.919	Oreochromis_niloticus
ENSMUSG00000028099	Polr3c	89	64.368	ENSOANG00000000559	-	100	60.556	Ornithorhynchus_anatinus
ENSMUSG00000028099	Polr3c	99	93.621	ENSOCUG00000003050	POLR3C	99	93.621	Oryctolagus_cuniculus
ENSMUSG00000028099	Polr3c	99	63.303	ENSORLG00000010133	polr3c	99	63.303	Oryzias_latipes
ENSMUSG00000028099	Polr3c	99	62.752	ENSORLG00020009245	polr3c	99	63.119	Oryzias_latipes_hni
ENSMUSG00000028099	Polr3c	99	62.936	ENSORLG00015015223	polr3c	99	62.936	Oryzias_latipes_hsok
ENSMUSG00000028099	Polr3c	99	63.071	ENSOMEG00000008558	polr3c	99	63.071	Oryzias_melastigma
ENSMUSG00000028099	Polr3c	99	93.621	ENSOGAG00000000209	POLR3C	99	93.621	Otolemur_garnettii
ENSMUSG00000028099	Polr3c	100	93.633	ENSOARG00000020588	POLR3C	100	93.633	Ovis_aries
ENSMUSG00000028099	Polr3c	100	93.633	ENSPPAG00000025184	POLR3C	100	93.633	Pan_paniscus
ENSMUSG00000028099	Polr3c	100	93.258	ENSPPRG00000008809	POLR3C	100	93.258	Panthera_pardus
ENSMUSG00000028099	Polr3c	100	93.258	ENSPTIG00000009916	POLR3C	100	93.258	Panthera_tigris_altaica
ENSMUSG00000028099	Polr3c	100	93.820	ENSPTRG00000001208	POLR3C	100	93.820	Pan_troglodytes
ENSMUSG00000028099	Polr3c	100	93.633	ENSPANG00000019404	POLR3C	100	93.633	Papio_anubis
ENSMUSG00000028099	Polr3c	99	66.234	ENSPKIG00000014883	polr3c	99	66.234	Paramormyrops_kingsleyae
ENSMUSG00000028099	Polr3c	99	85.553	ENSPSIG00000004694	POLR3C	99	85.553	Pelodiscus_sinensis
ENSMUSG00000028099	Polr3c	99	64.366	ENSPMGG00000007761	polr3c	99	64.366	Periophthalmus_magnuspinnatus
ENSMUSG00000028099	Polr3c	99	96.429	ENSPEMG00000016322	Polr3c	99	96.429	Peromyscus_maniculatus_bairdii
ENSMUSG00000028099	Polr3c	99	63.197	ENSPMAG00000006993	polr3c	99	63.197	Petromyzon_marinus
ENSMUSG00000028099	Polr3c	99	88.202	ENSPCIG00000011954	POLR3C	99	88.202	Phascolarctos_cinereus
ENSMUSG00000028099	Polr3c	99	62.816	ENSPFOG00000014106	polr3c	99	63.636	Poecilia_formosa
ENSMUSG00000028099	Polr3c	99	65.602	ENSPLAG00000018932	polr3c	99	65.789	Poecilia_latipinna
ENSMUSG00000028099	Polr3c	99	62.635	ENSPMEG00000023273	polr3c	99	63.455	Poecilia_mexicana
ENSMUSG00000028099	Polr3c	99	64.088	ENSPREG00000017050	polr3c	99	64.259	Poecilia_reticulata
ENSMUSG00000028099	Polr3c	100	92.884	ENSPPYG00000000936	POLR3C	100	92.884	Pongo_abelii
ENSMUSG00000028099	Polr3c	91	92.562	ENSPCAG00000010501	POLR3C	99	92.562	Procavia_capensis
ENSMUSG00000028099	Polr3c	87	96.063	ENSPCOG00000024937	POLR3C	100	96.063	Propithecus_coquereli
ENSMUSG00000028099	Polr3c	99	92.120	ENSPVAG00000014483	POLR3C	100	92.120	Pteropus_vampyrus
ENSMUSG00000028099	Polr3c	99	63.370	ENSPNYG00000004504	polr3c	99	63.370	Pundamilia_nyererei
ENSMUSG00000028099	Polr3c	98	63.551	ENSPNAG00000018675	polr3c	99	64.510	Pygocentrus_nattereri
ENSMUSG00000028099	Polr3c	100	97.373	ENSRNOG00000033560	Polr3c	100	97.373	Rattus_norvegicus
ENSMUSG00000028099	Polr3c	100	93.633	ENSRBIG00000035432	POLR3C	100	93.633	Rhinopithecus_bieti
ENSMUSG00000028099	Polr3c	100	93.633	ENSRROG00000039959	POLR3C	100	93.633	Rhinopithecus_roxellana
ENSMUSG00000028099	Polr3c	91	88.820	ENSSBOG00000028429	POLR3C	99	88.820	Saimiri_boliviensis_boliviensis
ENSMUSG00000028099	Polr3c	99	88.015	ENSSHAG00000018565	POLR3C	99	88.015	Sarcophilus_harrisii
ENSMUSG00000028099	Polr3c	99	68.097	ENSSFOG00015021863	polr3c	99	68.657	Scleropages_formosus
ENSMUSG00000028099	Polr3c	99	65.103	ENSSMAG00000016000	polr3c	99	65.478	Scophthalmus_maximus
ENSMUSG00000028099	Polr3c	99	65.356	ENSSDUG00000006590	polr3c	99	65.356	Seriola_dumerili
ENSMUSG00000028099	Polr3c	99	65.291	ENSSLDG00000015614	polr3c	99	65.291	Seriola_lalandi_dorsalis
ENSMUSG00000028099	Polr3c	63	94.643	ENSSARG00000014380	POLR3C	99	94.643	Sorex_araneus
ENSMUSG00000028099	Polr3c	99	84.615	ENSSPUG00000001834	POLR3C	99	84.615	Sphenodon_punctatus
ENSMUSG00000028099	Polr3c	99	64.286	ENSSPAG00000022520	polr3c	99	64.286	Stegastes_partitus
ENSMUSG00000028099	Polr3c	100	93.258	ENSSSCG00000006691	POLR3C	100	93.258	Sus_scrofa
ENSMUSG00000028099	Polr3c	99	70.896	ENSTGUG00000016941	POLR3C	99	70.896	Taeniopygia_guttata
ENSMUSG00000028099	Polr3c	99	63.586	ENSTRUG00000010726	polr3c	99	63.771	Takifugu_rubripes
ENSMUSG00000028099	Polr3c	99	64.444	ENSTNIG00000019501	polr3c	99	65.056	Tetraodon_nigroviridis
ENSMUSG00000028099	Polr3c	87	85.799	ENSTBEG00000015610	POLR3C	100	93.233	Tupaia_belangeri
ENSMUSG00000028099	Polr3c	72	93.878	ENSTTRG00000009216	POLR3C	72	93.878	Tursiops_truncatus
ENSMUSG00000028099	Polr3c	100	93.633	ENSUAMG00000021906	POLR3C	100	93.633	Ursus_americanus
ENSMUSG00000028099	Polr3c	100	93.633	ENSUMAG00000010180	POLR3C	100	93.633	Ursus_maritimus
ENSMUSG00000028099	Polr3c	100	92.884	ENSVVUG00000007421	POLR3C	100	92.884	Vulpes_vulpes
ENSMUSG00000028099	Polr3c	99	60.487	ENSXCOG00000019524	polr3c	99	60.487	Xiphophorus_couchianus
ENSMUSG00000028099	Polr3c	99	63.024	ENSXMAG00000016215	polr3c	99	63.370	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0002376	immune system process	-	IEA	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	-	ISO	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016779	nucleotidyltransferase activity	-	IEA	Function
GO:0032728	positive regulation of interferon-beta production	-	ISO	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0045089	positive regulation of innate immune response	-	ISO	Process
GO:0051607	defense response to virus	-	IEA	Process