EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028107 (Gene tree)
Gene ID: 71807
Gene Symbol: Tars2
Alias: 2610024N01Rik|Tarsl1
Full Name: threonyl-tRNA synthetase 2%2C mitochondrial (putative)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 20231 bases
Position: chr3:95739976-95760206
Accession: 1919057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000143038	tRNA_SAD	PF07973.14	1.2e-10	1	1
ENSMUSP00000096456	tRNA_SAD	PF07973.14	1.9e-10	1	1
ENSMUSP00000073946	tRNA_SAD	PF07973.14	4.3e-10	1	1
ENSMUSP00000029752	tRNA_SAD	PF07973.14	4.6e-10	1	1
ENSMUSP00000130269	tRNA_SAD	PF07973.14	5e-10	1	1
ENSMUSP00000143033	tRNA_SAD	PF07973.14	7.5e-10	1	1
ENSMUSP00000143757	tRNA_SAD	PF07973.14	7.4e-09	1	1
ENSMUSP00000143271	tRNA_SAD	PF07973.14	8.7e-09	1	1
ENSMUSP00000130269	HGTP_anticodon	PF03129.20	1.8e-17	1	1
ENSMUSP00000073946	HGTP_anticodon	PF03129.20	1.9e-17	1	1
ENSMUSP00000029752	HGTP_anticodon	PF03129.20	2.1e-17	1	1
ENSMUSP00000130269	tRNA-synt_2b	PF00587.25	3.1e-31	1	1
ENSMUSP00000029752	tRNA-synt_2b	PF00587.25	3.2e-31	1	1
ENSMUSP00000073946	tRNA-synt_2b	PF00587.25	2.7e-29	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000199570	-	661	-	ENSMUSP00000143038	209 (aa)	-	A0A0G2JF63
ENSMUST00000197501	-	625	-	ENSMUSP00000143270	11 (aa)	-	A0A0G2JFQ9
ENSMUST00000199869	-	3614	-	-	- (aa)	-	-
ENSMUST00000197389	-	643	-	-	- (aa)	-	-
ENSMUST00000163530	-	2157	XM_017319729	ENSMUSP00000130269	642 (aa)	-	E9Q7H6
ENSMUST00000195929	-	623	-	ENSMUSP00000143757	104 (aa)	-	A0A0G2JGZ2
ENSMUST00000197720	-	732	-	ENSMUSP00000143295	79 (aa)	-	A0A0G2JFT3
ENSMUST00000098857	-	3228	XM_017319728	ENSMUSP00000096456	423 (aa)	XP_017175217	Q3TP97
ENSMUST00000199464	-	2037	-	ENSMUSP00000143328	177 (aa)	-	A0A0G2JFW1
ENSMUST00000196868	-	689	-	ENSMUSP00000143033	43 (aa)	-	A0A0G2JF59
ENSMUST00000196475	-	787	-	-	- (aa)	-	-
ENSMUST00000198007	-	636	-	-	- (aa)	-	-
ENSMUST00000074339	-	2313	-	ENSMUSP00000073946	697 (aa)	-	Q922A3
ENSMUST00000198289	-	946	-	ENSMUSP00000143271	142 (aa)	-	A0A0G2JFR0
ENSMUST00000200376	-	577	-	-	- (aa)	-	-
ENSMUST00000029752	-	2400	XM_011240236	ENSMUSP00000029752	723 (aa)	XP_011238538	Q3UQ84
ENSMUST00000196077	-	1981	-	ENSMUSP00000143722	264 (aa)	-	A0A0G2JGW2
ENSMUST00000197895	-	457	-	-	- (aa)	-	-
ENSMUST00000198194	-	714	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028107's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028107's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000028107	Tars2	99	60.000	ENSMUSG00000022241	Tars	93	54.703
ENSMUSG00000028107	Tars2	99	60.000	ENSMUSG00000030515	Tarsl2	85	55.187

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028107	Tars2	99	90.714	ENSG00000143374	TARS2	100	83.679	Homo_sapiens
ENSMUSG00000028107	Tars2	99	87.500	ENSAMEG00000001547	TARS2	100	83.956	Ailuropoda_melanoleuca
ENSMUSG00000028107	Tars2	99	90.000	ENSANAG00000019620	TARS2	100	83.679	Aotus_nancymaae
ENSMUSG00000028107	Tars2	100	85.211	ENSBTAG00000003799	TARS2	100	82.849	Bos_taurus
ENSMUSG00000028107	Tars2	99	90.000	ENSCJAG00000006429	TARS2	100	83.264	Callithrix_jacchus
ENSMUSG00000028107	Tars2	100	89.333	ENSCAFG00000011941	TARS2	100	82.158	Canis_familiaris
ENSMUSG00000028107	Tars2	100	89.333	ENSCAFG00020019615	TARS2	100	82.158	Canis_lupus_dingo
ENSMUSG00000028107	Tars2	100	85.915	ENSCHIG00000018559	TARS2	100	82.711	Capra_hircus
ENSMUSG00000028107	Tars2	99	91.429	ENSTSYG00000003903	TARS2	100	84.595	Carlito_syrichta
ENSMUSG00000028107	Tars2	98	76.190	ENSCAPG00000004123	-	100	80.088	Cavia_aperea
ENSMUSG00000028107	Tars2	99	82.979	ENSCPOG00000010586	-	100	81.379	Cavia_porcellus
ENSMUSG00000028107	Tars2	99	90.714	ENSCCAG00000034305	TARS2	100	83.126	Cebus_capucinus
ENSMUSG00000028107	Tars2	99	83.571	ENSCATG00000034784	TARS2	100	83.947	Cercocebus_atys
ENSMUSG00000028107	Tars2	99	84.397	ENSCLAG00000017274	TARS2	100	84.646	Chinchilla_lanigera
ENSMUSG00000028107	Tars2	99	91.429	ENSCSAG00000018075	TARS2	100	84.094	Chlorocebus_sabaeus
ENSMUSG00000028107	Tars2	94	79.839	ENSCHOG00000000796	-	81	79.839	Choloepus_hoffmanni
ENSMUSG00000028107	Tars2	99	91.429	ENSCANG00000035036	TARS2	98	85.489	Colobus_angolensis_palliatus
ENSMUSG00000028107	Tars2	100	95.349	ENSCGRG00001023517	Tars2	100	92.534	Cricetulus_griseus_chok1gshd
ENSMUSG00000028107	Tars2	100	95.349	ENSCGRG00000007836	Tars2	100	92.534	Cricetulus_griseus_crigri
ENSMUSG00000028107	Tars2	99	89.041	ENSDNOG00000005934	TARS2	100	82.434	Dasypus_novemcinctus
ENSMUSG00000028107	Tars2	100	86.620	ENSDORG00000007569	Tars2	100	86.620	Dipodomys_ordii
ENSMUSG00000028107	Tars2	100	90.698	ENSETEG00000008569	TARS2	100	76.072	Echinops_telfairi
ENSMUSG00000028107	Tars2	100	87.324	ENSEASG00005001587	TARS2	100	83.402	Equus_asinus_asinus
ENSMUSG00000028107	Tars2	100	87.324	ENSECAG00000014276	TARS2	100	83.541	Equus_caballus
ENSMUSG00000028107	Tars2	87	91.489	ENSEEUG00000000186	-	78	83.799	Erinaceus_europaeus
ENSMUSG00000028107	Tars2	100	83.099	ENSEEUG00000012661	-	72	88.462	Erinaceus_europaeus
ENSMUSG00000028107	Tars2	100	88.372	ENSFCAG00000001702	TARS2	100	84.334	Felis_catus
ENSMUSG00000028107	Tars2	99	85.000	ENSFDAG00000012739	TARS2	99	83.629	Fukomys_damarensis
ENSMUSG00000028107	Tars2	99	90.000	ENSGGOG00000006311	TARS2	100	85.010	Gorilla_gorilla
ENSMUSG00000028107	Tars2	99	82.857	ENSHGLG00000009219	TARS2	100	82.011	Heterocephalus_glaber_female
ENSMUSG00000028107	Tars2	99	82.857	ENSHGLG00100008254	TARS2	100	79.448	Heterocephalus_glaber_male
ENSMUSG00000028107	Tars2	100	88.732	ENSSTOG00000008311	TARS2	100	87.008	Ictidomys_tridecemlineatus
ENSMUSG00000028107	Tars2	99	88.571	ENSJJAG00000021883	Tars2	100	87.008	Jaculus_jaculus
ENSMUSG00000028107	Tars2	100	88.028	ENSLAFG00000004979	TARS2	100	81.906	Loxodonta_africana
ENSMUSG00000028107	Tars2	99	91.429	ENSMFAG00000030387	TARS2	100	83.679	Macaca_fascicularis
ENSMUSG00000028107	Tars2	99	90.714	ENSMMUG00000006256	TARS2	100	83.679	Macaca_mulatta
ENSMUSG00000028107	Tars2	85	90.909	ENSMNEG00000042066	TARS2	96	73.506	Macaca_nemestrina
ENSMUSG00000028107	Tars2	99	90.714	ENSMLEG00000030174	TARS2	100	83.264	Mandrillus_leucophaeus
ENSMUSG00000028107	Tars2	99	62.143	ENSMGAG00000000718	TARS2	100	60.951	Meleagris_gallopavo
ENSMUSG00000028107	Tars2	100	92.000	ENSMAUG00000008184	Tars2	100	91.159	Mesocricetus_auratus
ENSMUSG00000028107	Tars2	99	92.857	ENSMICG00000008016	TARS2	100	79.780	Microcebus_murinus
ENSMUSG00000028107	Tars2	100	94.366	ENSMOCG00000018432	Tars2	100	92.913	Microtus_ochrogaster
ENSMUSG00000028107	Tars2	99	78.873	ENSMODG00000018792	TARS2	99	73.093	Monodelphis_domestica
ENSMUSG00000028107	Tars2	100	100.000	MGP_CAROLIEiJ_G0025352	Tars2	100	100.000	Mus_caroli
ENSMUSG00000028107	Tars2	100	99.038	MGP_PahariEiJ_G0026796	Tars2	100	99.254	Mus_pahari
ENSMUSG00000028107	Tars2	100	100.000	MGP_SPRETEiJ_G0026296	Tars2	100	100.000	Mus_spretus
ENSMUSG00000028107	Tars2	100	90.698	ENSMPUG00000004795	TARS2	100	84.509	Mustela_putorius_furo
ENSMUSG00000028107	Tars2	99	89.041	ENSMLUG00000013123	TARS2	100	82.573	Myotis_lucifugus
ENSMUSG00000028107	Tars2	100	88.732	ENSNGAG00000024279	-	100	88.732	Nannospalax_galili
ENSMUSG00000028107	Tars2	99	91.429	ENSNLEG00000009858	TARS2	100	83.956	Nomascus_leucogenys
ENSMUSG00000028107	Tars2	99	79.577	ENSMEUG00000014226	TARS2	92	78.585	Notamacropus_eugenii
ENSMUSG00000028107	Tars2	98	84.348	ENSOPRG00000010194	TARS2	88	84.348	Ochotona_princeps
ENSMUSG00000028107	Tars2	99	87.943	ENSODEG00000011883	TARS2	100	84.449	Octodon_degus
ENSMUSG00000028107	Tars2	95	82.222	ENSOGAG00000005360	TARS2	100	72.453	Otolemur_garnettii
ENSMUSG00000028107	Tars2	100	87.324	ENSOARG00000020814	TARS2	100	83.425	Ovis_aries
ENSMUSG00000028107	Tars2	99	90.714	ENSPPAG00000042011	TARS2	100	83.541	Pan_paniscus
ENSMUSG00000028107	Tars2	100	88.372	ENSPPRG00000019975	TARS2	100	83.812	Panthera_pardus
ENSMUSG00000028107	Tars2	100	88.372	ENSPTIG00000008079	TARS2	100	84.073	Panthera_tigris_altaica
ENSMUSG00000028107	Tars2	99	90.714	ENSPTRG00000001256	TARS2	100	83.679	Pan_troglodytes
ENSMUSG00000028107	Tars2	99	90.714	ENSPANG00000016774	TARS2	100	83.264	Papio_anubis
ENSMUSG00000028107	Tars2	100	94.366	ENSPEMG00000014203	-	100	94.366	Peromyscus_maniculatus_bairdii
ENSMUSG00000028107	Tars2	99	79.577	ENSPCIG00000008884	TARS2	98	75.319	Phascolarctos_cinereus
ENSMUSG00000028107	Tars2	99	90.714	ENSPPYG00000000898	TARS2	100	84.094	Pongo_abelii
ENSMUSG00000028107	Tars2	99	80.822	ENSPCAG00000016619	TARS2	100	68.444	Procavia_capensis
ENSMUSG00000028107	Tars2	99	90.000	ENSPCOG00000017247	TARS2	100	86.423	Propithecus_coquereli
ENSMUSG00000028107	Tars2	99	85.714	ENSPVAG00000004340	TARS2	100	77.317	Pteropus_vampyrus
ENSMUSG00000028107	Tars2	100	95.070	ENSRNOG00000057194	Tars2	100	93.914	Rattus_norvegicus
ENSMUSG00000028107	Tars2	99	91.429	ENSRBIG00000044518	TARS2	99	86.008	Rhinopithecus_bieti
ENSMUSG00000028107	Tars2	99	91.429	ENSRROG00000030946	TARS2	100	83.817	Rhinopithecus_roxellana
ENSMUSG00000028107	Tars2	99	90.000	ENSSBOG00000001108	TARS2	100	81.723	Saimiri_boliviensis_boliviensis
ENSMUSG00000028107	Tars2	99	80.282	ENSSHAG00000010286	TARS2	100	76.656	Sarcophilus_harrisii
ENSMUSG00000028107	Tars2	99	82.143	ENSSARG00000013133	TARS2	100	76.731	Sorex_araneus
ENSMUSG00000028107	Tars2	100	87.324	ENSSSCG00000026395	TARS2	99	84.273	Sus_scrofa
ENSMUSG00000028107	Tars2	99	90.714	ENSTBEG00000003968	TARS2	82	81.250	Tupaia_belangeri
ENSMUSG00000028107	Tars2	66	86.508	ENSTTRG00000010627	TARS2	80	86.508	Tursiops_truncatus
ENSMUSG00000028107	Tars2	100	86.047	ENSUAMG00000023983	TARS2	96	84.286	Ursus_americanus
ENSMUSG00000028107	Tars2	99	88.889	ENSUMAG00000003705	TARS2	100	84.232	Ursus_maritimus
ENSMUSG00000028107	Tars2	89	80.508	ENSVPAG00000005427	TARS2	74	84.091	Vicugna_pacos
ENSMUSG00000028107	Tars2	100	89.333	ENSVVUG00000009226	TARS2	100	82.573	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002161	aminoacyl-tRNA editing activity	-	ISO	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004829	threonine-tRNA ligase activity	21873635.	IBA	Function
GO:0004829	threonine-tRNA ligase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0006412	translation	-	IEA	Process
GO:0006418	tRNA aminoacylation for protein translation	-	IEA	Process
GO:0006435	threonyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0016874	ligase activity	-	IEA	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043039	tRNA aminoacylation	-	IEA	Process