EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028273 (Gene tree)
Gene ID: 56376
Gene Symbol: Pdlim5
Alias: 1110001A05Rik|Enh|Enh2|Enh3
Full Name: PDZ and LIM domain 5
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 156107
Position: chr3: 142239590-142395696
Accession: 1927489
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000196050	-	2089	-	-	- (aa)	-	-
ENSMUST00000200650	-	669	-	ENSMUSP00000143762	223 (aa)	-	A0A0G2JGZ5
ENSMUST00000090134	-	1722	-	ENSMUSP00000087595	214 (aa)	-	Q9CRA2
ENSMUST00000168967	-	1755	XM_006501751	ENSMUSP00000132647	234 (aa)	XP_006501814	D9J303
ENSMUST00000195975	-	1845	XM_006501738	ENSMUSP00000142737	614 (aa)	XP_006501801	D9J302
ENSMUST00000200043	-	1581	-	ENSMUSP00000143343	526 (aa)	-	D9J300
ENSMUST00000196908	-	1196	-	ENSMUSP00000143098	337 (aa)	-	Q8CI51
ENSMUST00000196220	-	1725	XM_006501741	ENSMUSP00000142460	574 (aa)	XP_006501804	D9J301
ENSMUST00000029941	-	5016	XM_006501743	ENSMUSP00000029941	591 (aa)	XP_006501806	Q8CI51
ENSMUST00000198381	-	1555	XM_006501748	ENSMUSP00000142899	482 (aa)	XP_006501811	D9J2Z9
ENSMUST00000058626	-	873	-	ENSMUSP00000059267	239 (aa)	-	F8WJI6
ENSMUST00000170361	-	2010	XM_006501750	ENSMUSP00000128752	239 (aa)	XP_006501813	E9Q8P5
ENSMUST00000197808	-	759	-	ENSMUSP00000142790	253 (aa)	-	A0A0G2JEJ0

Gene Model

Click here to download ENSMUSG00000028273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028273's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028273	Pdlim5	100	94.393	ENSG00000163110	PDLIM5	99	95.833	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	-	ISO	Function
GO:0005080	protein kinase C binding	-	ISO	Function
GO:0005515	protein binding	10833443.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0014069	postsynaptic density	-	ISO	Component
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0016020	membrane	-	ISO	Component
GO:0030018	Z disc	10833443.	IDA	Component
GO:0030054	cell junction	-	IEA	Component
GO:0042805	actinin binding	-	ISO	Function
GO:0043005	neuron projection	-	IEA	Component
GO:0045202	synapse	-	IEA	Component
GO:0045211	postsynaptic membrane	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0051963	regulation of synapse assembly	-	ISO	Process
GO:0061001	regulation of dendritic spine morphogenesis	-	ISO	Process
GO:0061049	cell growth involved in cardiac muscle cell development	-	ISO	Process