EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000102915	-	5404	-	ENSMUSP00000099979	1191 (aa)	-	Q8CG48
ENSMUST00000146787	-	599	-	-	- (aa)	-	-
ENSMUST00000131163	-	643	-	-	- (aa)	-	-
ENSMUST00000142227	-	1660	-	ENSMUSP00000114228	471 (aa)	-	B1AWH6
ENSMUST00000117280	-	5328	-	ENSMUSP00000113940	1191 (aa)	-	Q8CG48

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028312	Smc2	100	46.072	FBgn0027783	SMC2	99	41.156	Drosophila_melanogaster
ENSMUSG00000028312	Smc2	100	93.206	ENSG00000136824	SMC2	100	93.103	Homo_sapiens
ENSMUSG00000028312	Smc2	93	42.601	YFR031C		99	36.953	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000012	single strand break repair	20139420.	NAS	Process
GO:0000012	single strand break repair	20139420.	TAS	Process
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000228	nuclear chromosome	-	ISO	Component
GO:0000793	condensed chromosome	21795393.	IDA	Component
GO:0000793	condensed chromosome	-	ISO	Component
GO:0000796	condensin complex	21795393.	IDA	Component
GO:0000796	condensin complex	25474630.	IPI	Component
GO:0000796	condensin complex	-	ISO	Component
GO:0003697	single-stranded DNA binding	20139420.	IDA	Function
GO:0005515	protein binding	15102471.20139420.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	20139420.	TAS	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0007049	cell cycle	-	IEA	Process
GO:0007076	mitotic chromosome condensation	-	ISO	Process
GO:0010032	meiotic chromosome condensation	21795393.	IMP	Process
GO:0030261	chromosome condensation	-	IEA	Process
GO:0045132	meiotic chromosome segregation	21795393.	IMP	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0051276	chromosome organization	-	IEA	Process
GO:0051301	cell division	-	IEA	Process
GO:0051383	kinetochore organization	21795393.	IMP	Process