EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028318 (Gene tree)
Gene ID: 64424
Gene Symbol: Polr1e
Alias: 53kDa|D030019D19Rik|Paf53|Praf1
Full Name: polymerase (RNA) I polypeptide E
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 17983 bases
Position: chr4:45018583-45036565
Accession: 1929022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000059941	RNA_pol_I_A49	PF06870.12	1.5e-100	1	1
ENSMUSP00000121007	RNA_pol_I_A49	PF06870.12	1.8e-100	1	1
ENSMUSP00000029999	RNA_pol_I_A49	PF06870.12	1.7e-95	1	1
ENSMUSP00000103444	RNA_pol_I_A49	PF06870.12	3.5e-90	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000150663	-	429	-	-	- (aa)	-	-
ENSMUST00000153252	-	657	-	-	- (aa)	-	-
ENSMUST00000133157	-	2986	-	ENSMUSP00000121007	434 (aa)	-	Q8K202
ENSMUST00000054723	-	1235	-	ENSMUSP00000059941	407 (aa)	-	G8JL51
ENSMUST00000029999	-	1724	-	ENSMUSP00000029999	482 (aa)	-	Q8K202
ENSMUST00000149284	-	642	-	-	- (aa)	-	-
ENSMUST00000107814	-	1470	-	ENSMUSP00000103444	393 (aa)	-	Q8K202

Gene Model

Click here to download ENSMUSG00000028318's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028318's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028318	Polr1e	99	77.805	ENSG00000137054	POLR1E	99	77.590	Homo_sapiens
ENSMUSG00000028318	Polr1e	97	40.351	ENSAPOG00000012452	polr1e	94	58.824	Acanthochromis_polyacanthus
ENSMUSG00000028318	Polr1e	100	71.369	ENSAMEG00000010193	POLR1E	100	71.369	Ailuropoda_melanoleuca
ENSMUSG00000028318	Polr1e	99	41.827	ENSACIG00000009884	polr1e	99	55.814	Amphilophus_citrinellus
ENSMUSG00000028318	Polr1e	97	44.110	ENSAOCG00000005665	polr1e	99	44.337	Amphiprion_ocellaris
ENSMUSG00000028318	Polr1e	97	43.860	ENSAPEG00000020581	polr1e	99	44.096	Amphiprion_percula
ENSMUSG00000028318	Polr1e	97	45.592	ENSATEG00000020609	polr1e	99	45.301	Anabas_testudineus
ENSMUSG00000028318	Polr1e	83	52.756	ENSAPLG00000010340	POLR1E	100	55.729	Anas_platyrhynchos
ENSMUSG00000028318	Polr1e	98	77.750	ENSANAG00000038046	POLR1E	99	76.867	Aotus_nancymaae
ENSMUSG00000028318	Polr1e	97	43.284	ENSACLG00000013685	polr1e	98	43.301	Astatotilapia_calliptera
ENSMUSG00000028318	Polr1e	97	42.607	ENSAMXG00000018181	polr1e	98	42.233	Astyanax_mexicanus
ENSMUSG00000028318	Polr1e	97	80.759	ENSBTAG00000012243	POLR1E	99	80.048	Bos_taurus
ENSMUSG00000028318	Polr1e	99	71.464	ENSCJAG00000010512	POLR1E	93	76.280	Callithrix_jacchus
ENSMUSG00000028318	Polr1e	99	79.052	ENSCAFG00000002377	POLR1E	99	79.277	Canis_familiaris
ENSMUSG00000028318	Polr1e	97	79.898	ENSCAFG00020017851	POLR1E	99	79.518	Canis_lupus_dingo
ENSMUSG00000028318	Polr1e	97	79.241	ENSCHIG00000019479	POLR1E	99	78.554	Capra_hircus
ENSMUSG00000028318	Polr1e	97	79.135	ENSTSYG00000002075	POLR1E	99	78.897	Carlito_syrichta
ENSMUSG00000028318	Polr1e	71	80.903	ENSCAPG00000015653	POLR1E	99	80.903	Cavia_aperea
ENSMUSG00000028318	Polr1e	97	82.952	ENSCPOG00000009965	POLR1E	99	82.169	Cavia_porcellus
ENSMUSG00000028318	Polr1e	97	70.229	ENSCCAG00000029460	POLR1E	99	75.248	Cebus_capucinus
ENSMUSG00000028318	Polr1e	97	77.863	ENSCATG00000031732	POLR1E	99	81.982	Cercocebus_atys
ENSMUSG00000028318	Polr1e	94	82.385	ENSCLAG00000012701	POLR1E	97	82.385	Chinchilla_lanigera
ENSMUSG00000028318	Polr1e	97	77.608	ENSCSAG00000010782	POLR1E	99	77.108	Chlorocebus_sabaeus
ENSMUSG00000028318	Polr1e	99	68.382	ENSCHOG00000013024	POLR1E	78	77.895	Choloepus_hoffmanni
ENSMUSG00000028318	Polr1e	97	64.885	ENSCPBG00000006923	POLR1E	99	64.234	Chrysemys_picta_bellii
ENSMUSG00000028318	Polr1e	99	76.559	ENSCANG00000036112	POLR1E	99	81.250	Colobus_angolensis_palliatus
ENSMUSG00000028318	Polr1e	100	87.788	ENSCGRG00001006197	Polr1e	100	87.788	Cricetulus_griseus_chok1gshd
ENSMUSG00000028318	Polr1e	100	87.327	ENSCGRG00000006430	Polr1e	100	87.327	Cricetulus_griseus_crigri
ENSMUSG00000028318	Polr1e	96	41.960	ENSCSEG00000005121	polr1e	99	41.019	Cynoglossus_semilaevis
ENSMUSG00000028318	Polr1e	97	41.310	ENSCVAG00000019759	polr1e	99	40.964	Cyprinodon_variegatus
ENSMUSG00000028318	Polr1e	94	44.935	ENSDARG00000006434	polr1e	99	43.269	Danio_rerio
ENSMUSG00000028318	Polr1e	97	69.231	ENSDNOG00000010257	POLR1E	99	70.842	Dasypus_novemcinctus
ENSMUSG00000028318	Polr1e	87	74.930	ENSETEG00000018204	POLR1E	99	74.930	Echinops_telfairi
ENSMUSG00000028318	Polr1e	62	33.835	ENSEBUG00000010635	-	89	33.835	Eptatretus_burgeri
ENSMUSG00000028318	Polr1e	97	79.389	ENSEASG00005000675	POLR1E	99	79.277	Equus_asinus_asinus
ENSMUSG00000028318	Polr1e	97	79.135	ENSECAG00000014669	POLR1E	99	79.036	Equus_caballus
ENSMUSG00000028318	Polr1e	99	67.574	ENSEEUG00000011928	POLR1E	79	83.146	Erinaceus_europaeus
ENSMUSG00000028318	Polr1e	97	45.226	ENSELUG00000008150	polr1e	98	44.203	Esox_lucius
ENSMUSG00000028318	Polr1e	98	77.000	ENSFCAG00000013081	POLR1E	99	77.590	Felis_catus
ENSMUSG00000028318	Polr1e	97	57.215	ENSFALG00000012950	POLR1E	99	57.215	Ficedula_albicollis
ENSMUSG00000028318	Polr1e	97	83.461	ENSFDAG00000016917	POLR1E	99	82.892	Fukomys_damarensis
ENSMUSG00000028318	Polr1e	97	43.108	ENSFHEG00000009801	polr1e	99	42.686	Fundulus_heteroclitus
ENSMUSG00000028318	Polr1e	93	38.860	ENSGMOG00000003336	POLR1E	93	51.429	Gadus_morhua
ENSMUSG00000028318	Polr1e	97	59.137	ENSGALG00000005395	POLR1E	100	58.213	Gallus_gallus
ENSMUSG00000028318	Polr1e	97	42.317	ENSGAFG00000004850	polr1e	99	41.928	Gambusia_affinis
ENSMUSG00000028318	Polr1e	97	40.988	ENSGACG00000016087	polr1e	99	41.093	Gasterosteus_aculeatus
ENSMUSG00000028318	Polr1e	99	55.224	ENSGAGG00000001659	POLR1E	98	65.979	Gopherus_agassizii
ENSMUSG00000028318	Polr1e	99	77.805	ENSGGOG00000001882	POLR1E	99	81.982	Gorilla_gorilla
ENSMUSG00000028318	Polr1e	97	43.284	ENSHBUG00000002559	polr1e	98	43.301	Haplochromis_burtoni
ENSMUSG00000028318	Polr1e	97	81.934	ENSHGLG00000002036	POLR1E	99	81.205	Heterocephalus_glaber_female
ENSMUSG00000028318	Polr1e	97	82.188	ENSHGLG00100012784	POLR1E	99	81.446	Heterocephalus_glaber_male
ENSMUSG00000028318	Polr1e	97	40.909	ENSHCOG00000002774	polr1e	99	41.446	Hippocampus_comes
ENSMUSG00000028318	Polr1e	97	42.857	ENSIPUG00000003019	polr1e	99	42.410	Ictalurus_punctatus
ENSMUSG00000028318	Polr1e	97	79.898	ENSSTOG00000009810	POLR1E	99	79.759	Ictidomys_tridecemlineatus
ENSMUSG00000028318	Polr1e	97	82.188	ENSJJAG00000020731	Polr1e	99	79.677	Jaculus_jaculus
ENSMUSG00000028318	Polr1e	97	41.457	ENSKMAG00000000046	polr1e	99	41.587	Kryptolebias_marmoratus
ENSMUSG00000028318	Polr1e	97	44.304	ENSLBEG00000003104	polr1e	99	44.471	Labrus_bergylta
ENSMUSG00000028318	Polr1e	88	62.050	ENSLACG00000003416	POLR1E	99	62.050	Latimeria_chalumnae
ENSMUSG00000028318	Polr1e	97	49.618	ENSLOCG00000012859	polr1e	99	48.681	Lepisosteus_oculatus
ENSMUSG00000028318	Polr1e	97	79.389	ENSLAFG00000012831	POLR1E	99	78.571	Loxodonta_africana
ENSMUSG00000028318	Polr1e	97	77.665	ENSMFAG00000045465	POLR1E	99	81.982	Macaca_fascicularis
ENSMUSG00000028318	Polr1e	97	77.863	ENSMMUG00000017892	POLR1E	99	81.982	Macaca_mulatta
ENSMUSG00000028318	Polr1e	97	71.040	ENSMNEG00000040283	POLR1E	99	76.991	Macaca_nemestrina
ENSMUSG00000028318	Polr1e	97	77.863	ENSMLEG00000031135	POLR1E	99	81.982	Mandrillus_leucophaeus
ENSMUSG00000028318	Polr1e	97	44.000	ENSMAMG00000001260	polr1e	99	43.230	Mastacembelus_armatus
ENSMUSG00000028318	Polr1e	97	43.532	ENSMZEG00005021536	polr1e	98	43.541	Maylandia_zebra
ENSMUSG00000028318	Polr1e	99	87.298	ENSMAUG00000021044	Polr1e	99	87.298	Mesocricetus_auratus
ENSMUSG00000028318	Polr1e	98	77.750	ENSMICG00000003673	POLR1E	99	77.831	Microcebus_murinus
ENSMUSG00000028318	Polr1e	100	86.175	ENSMOCG00000012920	Polr1e	100	86.175	Microtus_ochrogaster
ENSMUSG00000028318	Polr1e	97	44.472	ENSMMOG00000007391	polr1e	99	43.405	Mola_mola
ENSMUSG00000028318	Polr1e	93	68.865	ENSMODG00000002884	POLR1E	97	68.434	Monodelphis_domestica
ENSMUSG00000028318	Polr1e	97	43.325	ENSMALG00000002665	polr1e	98	42.959	Monopterus_albus
ENSMUSG00000028318	Polr1e	100	95.853	MGP_CAROLIEiJ_G0025967	Polr1e	100	95.853	Mus_caroli
ENSMUSG00000028318	Polr1e	100	92.875	MGP_PahariEiJ_G0024114	Polr1e	100	92.875	Mus_pahari
ENSMUSG00000028318	Polr1e	100	98.982	MGP_SPRETEiJ_G0026930	Polr1e	100	98.982	Mus_spretus
ENSMUSG00000028318	Polr1e	97	73.036	ENSMPUG00000006040	POLR1E	100	73.036	Mustela_putorius_furo
ENSMUSG00000028318	Polr1e	97	78.117	ENSMLUG00000012688	POLR1E	98	76.581	Myotis_lucifugus
ENSMUSG00000028318	Polr1e	99	83.834	ENSNGAG00000002520	Polr1e	99	83.834	Nannospalax_galili
ENSMUSG00000028318	Polr1e	97	43.532	ENSNBRG00000016822	polr1e	98	43.541	Neolamprologus_brichardi
ENSMUSG00000028318	Polr1e	98	78.000	ENSNLEG00000003616	POLR1E	99	81.081	Nomascus_leucogenys
ENSMUSG00000028318	Polr1e	75	72.500	ENSMEUG00000015372	-	80	72.500	Notamacropus_eugenii
ENSMUSG00000028318	Polr1e	68	88.000	ENSOPRG00000014206	POLR1E	92	88.000	Ochotona_princeps
ENSMUSG00000028318	Polr1e	97	83.969	ENSODEG00000014565	POLR1E	100	80.930	Octodon_degus
ENSMUSG00000028318	Polr1e	100	42.152	ENSONIG00000008921	polr1e	100	42.152	Oreochromis_niloticus
ENSMUSG00000028318	Polr1e	97	79.644	ENSOCUG00000024773	POLR1E	99	79.277	Oryctolagus_cuniculus
ENSMUSG00000028318	Polr1e	97	42.356	ENSORLG00000005143	polr1e	99	42.169	Oryzias_latipes
ENSMUSG00000028318	Polr1e	97	39.646	ENSORLG00020007271	polr1e	99	50.575	Oryzias_latipes_hni
ENSMUSG00000028318	Polr1e	97	42.105	ENSORLG00015000137	polr1e	99	41.928	Oryzias_latipes_hsok
ENSMUSG00000028318	Polr1e	97	41.103	ENSOMEG00000013264	polr1e	99	40.758	Oryzias_melastigma
ENSMUSG00000028318	Polr1e	97	79.389	ENSOGAG00000012981	POLR1E	98	77.962	Otolemur_garnettii
ENSMUSG00000028318	Polr1e	97	79.494	ENSOARG00000011465	POLR1E	99	76.389	Ovis_aries
ENSMUSG00000028318	Polr1e	99	77.805	ENSPPAG00000034566	POLR1E	99	81.982	Pan_paniscus
ENSMUSG00000028318	Polr1e	97	77.354	ENSPPRG00000005649	POLR1E	99	77.349	Panthera_pardus
ENSMUSG00000028318	Polr1e	97	77.354	ENSPTIG00000009774	POLR1E	99	77.349	Panthera_tigris_altaica
ENSMUSG00000028318	Polr1e	99	77.805	ENSPTRG00000020944	POLR1E	99	81.982	Pan_troglodytes
ENSMUSG00000028318	Polr1e	97	77.863	ENSPANG00000025563	POLR1E	99	81.982	Papio_anubis
ENSMUSG00000028318	Polr1e	97	45.729	ENSPKIG00000003562	polr1e	99	44.844	Paramormyrops_kingsleyae
ENSMUSG00000028318	Polr1e	98	60.000	ENSPSIG00000003274	POLR1E	92	60.506	Pelodiscus_sinensis
ENSMUSG00000028318	Polr1e	99	43.276	ENSPMGG00000024169	polr1e	97	43.276	Periophthalmus_magnuspinnatus
ENSMUSG00000028318	Polr1e	100	86.636	ENSPEMG00000019151	-	100	86.636	Peromyscus_maniculatus_bairdii
ENSMUSG00000028318	Polr1e	100	71.034	ENSPEMG00000022300	-	99	79.070	Peromyscus_maniculatus_bairdii
ENSMUSG00000028318	Polr1e	93	69.393	ENSPCIG00000014798	POLR1E	97	69.192	Phascolarctos_cinereus
ENSMUSG00000028318	Polr1e	97	41.805	ENSPFOG00000019627	polr1e	100	41.480	Poecilia_formosa
ENSMUSG00000028318	Polr1e	97	43.325	ENSPLAG00000022679	polr1e	99	42.892	Poecilia_latipinna
ENSMUSG00000028318	Polr1e	88	43.490	ENSPMEG00000022123	polr1e	93	43.490	Poecilia_mexicana
ENSMUSG00000028318	Polr1e	97	42.821	ENSPREG00000009470	polr1e	99	42.410	Poecilia_reticulata
ENSMUSG00000028318	Polr1e	97	77.099	ENSPPYG00000019061	POLR1E	99	76.627	Pongo_abelii
ENSMUSG00000028318	Polr1e	58	76.695	ENSPCAG00000004891	POLR1E	77	76.695	Procavia_capensis
ENSMUSG00000028318	Polr1e	97	78.372	ENSPCOG00000027448	POLR1E	99	78.072	Propithecus_coquereli
ENSMUSG00000028318	Polr1e	98	80.250	ENSPVAG00000007940	POLR1E	84	80.250	Pteropus_vampyrus
ENSMUSG00000028318	Polr1e	97	43.284	ENSPNYG00000001032	polr1e	98	43.301	Pundamilia_nyererei
ENSMUSG00000028318	Polr1e	97	42.424	ENSPNAG00000006987	polr1e	95	42.821	Pygocentrus_nattereri
ENSMUSG00000028318	Polr1e	100	89.631	ENSRNOG00000012664	Polr1e	100	89.631	Rattus_norvegicus
ENSMUSG00000028318	Polr1e	98	77.250	ENSRBIG00000034214	POLR1E	99	77.105	Rhinopithecus_bieti
ENSMUSG00000028318	Polr1e	97	77.354	ENSRROG00000031986	POLR1E	99	81.982	Rhinopithecus_roxellana
ENSMUSG00000028318	Polr1e	97	77.863	ENSSBOG00000021415	POLR1E	99	76.627	Saimiri_boliviensis_boliviensis
ENSMUSG00000028318	Polr1e	88	68.056	ENSSHAG00000016084	POLR1E	100	68.056	Sarcophilus_harrisii
ENSMUSG00000028318	Polr1e	97	46.348	ENSSFOG00015002293	polr1e	98	45.610	Scleropages_formosus
ENSMUSG00000028318	Polr1e	97	45.707	ENSSMAG00000011672	polr1e	91	46.078	Scophthalmus_maximus
ENSMUSG00000028318	Polr1e	97	44.250	ENSSDUG00000022279	polr1e	97	44.878	Seriola_dumerili
ENSMUSG00000028318	Polr1e	97	44.250	ENSSLDG00000024918	polr1e	98	43.689	Seriola_lalandi_dorsalis
ENSMUSG00000028318	Polr1e	68	64.655	ENSSARG00000009810	-	67	64.655	Sorex_araneus
ENSMUSG00000028318	Polr1e	97	64.721	ENSSPUG00000009499	POLR1E	99	63.196	Sphenodon_punctatus
ENSMUSG00000028318	Polr1e	97	44.361	ENSSPAG00000021240	polr1e	99	44.578	Stegastes_partitus
ENSMUSG00000028318	Polr1e	97	80.051	ENSSSCG00000005347	POLR1E	99	79.327	Sus_scrofa
ENSMUSG00000028318	Polr1e	97	47.178	ENSTGUG00000007169	POLR1E	100	51.454	Taeniopygia_guttata
ENSMUSG00000028318	Polr1e	97	42.250	ENSTRUG00000020779	polr1e	99	42.037	Takifugu_rubripes
ENSMUSG00000028318	Polr1e	97	43.073	ENSTNIG00000017812	polr1e	99	42.651	Tetraodon_nigroviridis
ENSMUSG00000028318	Polr1e	99	79.607	ENSTBEG00000013786	POLR1E	87	79.607	Tupaia_belangeri
ENSMUSG00000028318	Polr1e	98	80.149	ENSTTRG00000008294	POLR1E	86	79.950	Tursiops_truncatus
ENSMUSG00000028318	Polr1e	97	79.135	ENSUAMG00000012474	POLR1E	99	79.396	Ursus_americanus
ENSMUSG00000028318	Polr1e	97	79.135	ENSUMAG00000011496	POLR1E	99	79.036	Ursus_maritimus
ENSMUSG00000028318	Polr1e	87	73.607	ENSVPAG00000009048	POLR1E	82	72.989	Vicugna_pacos
ENSMUSG00000028318	Polr1e	97	79.898	ENSVVUG00000019954	POLR1E	99	79.277	Vulpes_vulpes
ENSMUSG00000028318	Polr1e	97	48.492	ENSXETG00000006533	polr1e	99	47.942	Xenopus_tropicalis
ENSMUSG00000028318	Polr1e	97	42.317	ENSXCOG00000013706	polr1e	99	41.928	Xiphophorus_couchianus
ENSMUSG00000028318	Polr1e	97	43.829	ENSXMAG00000012484	polr1e	99	43.373	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001179	RNA polymerase I transcription factor binding	8641287.	IDA	Function
GO:0001188	RNA polymerase I preinitiation complex assembly	8641287.	IDA	Process
GO:0001650	fibrillar center	-	ISO	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005515	protein binding	8921381.11592397.15226435.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	8641287.11592397.	IDA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	8641287.	IDA	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process