EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028330 (Gene tree)
Gene ID
433702
Gene Symbol
Ncbp1
Alias
-
Full Name
nuclear cap binding protein subunit 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
33791 bases
Position
chr4:46138613-46172403
Accession
1891840
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000030014MIF4G_likePF09088.119.9e-3511
ENSMUSP00000030014MIF4G_like_2PF09090.117.6e-8411
ENSMUSP00000030014MIF4GPF02854.191.2e-3011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000133286-781--- (aa)--
ENSMUST00000030014-3010XM_017320296ENSMUSP00000030014790 (aa)XP_017175785Q3UYV9
ENSMUST00000131187-474--- (aa)--
Gene Model
Click here to download ENSMUSG00000028330's gene model file
Pathways
Pathway IDPathway NameSource
mmu03013RNA transportKEGG
mmu03015mRNA surveillance pathwayKEGG
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028330's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028330Ncbp110097.975ENSG00000136937NCBP110097.975Homo_sapiens
ENSMUSG00000028330Ncbp19983.375ENSAPOG00000008002NCBP19982.997Acanthochromis_polyacanthus
ENSMUSG00000028330Ncbp110097.980ENSAMEG00000004763NCBP110097.980Ailuropoda_melanoleuca
ENSMUSG00000028330Ncbp19983.733ENSACIG00000000274NCBP19983.102Amphilophus_citrinellus
ENSMUSG00000028330Ncbp19983.501ENSAOCG00000021148NCBP19983.123Amphiprion_ocellaris
ENSMUSG00000028330Ncbp19983.501ENSAPEG00000001701NCBP19983.123Amphiprion_percula
ENSMUSG00000028330Ncbp19982.746ENSATEG00000006929NCBP19982.368Anabas_testudineus
ENSMUSG00000028330Ncbp19589.960ENSAPLG00000016318NCBP110090.092Anas_platyrhynchos
ENSMUSG00000028330Ncbp110086.142ENSACAG00000004409NCBP18786.017Anolis_carolinensis
ENSMUSG00000028330Ncbp110095.063ENSANAG00000025744NCBP19998.042Aotus_nancymaae
ENSMUSG00000028330Ncbp19982.997ENSACLG00000014812NCBP19982.961Astatotilapia_calliptera
ENSMUSG00000028330Ncbp19981.658ENSAMXG00000016364NCBP19981.156Astyanax_mexicanus
ENSMUSG00000028330Ncbp110097.722ENSBTAG00000009732NCBP110097.722Bos_taurus
ENSMUSG00000028330Ncbp19934.525WBGene00018156ncbp-19934.402Caenorhabditis_elegans
ENSMUSG00000028330Ncbp110098.228ENSCJAG00000010840NCBP110098.678Callithrix_jacchus
ENSMUSG00000028330Ncbp110098.101ENSCAFG00000002445NCBP110098.101Canis_familiaris
ENSMUSG00000028330Ncbp19997.338ENSCAFG00020017997NCBP110097.950Canis_lupus_dingo
ENSMUSG00000028330Ncbp110097.722ENSCHIG00000020139NCBP110097.722Capra_hircus
ENSMUSG00000028330Ncbp15296.845ENSTSYG00000011914NCBP19899.060Carlito_syrichta
ENSMUSG00000028330Ncbp18187.812ENSCAPG00000014252NCBP19087.656Cavia_aperea
ENSMUSG00000028330Ncbp19796.089ENSCPOG00000012573NCBP19996.089Cavia_porcellus
ENSMUSG00000028330Ncbp110098.101ENSCCAG00000032297NCBP110098.101Cebus_capucinus
ENSMUSG00000028330Ncbp110097.975ENSCATG00000010052NCBP110097.975Cercocebus_atys
ENSMUSG00000028330Ncbp110097.975ENSCLAG00000014339NCBP110097.975Chinchilla_lanigera
ENSMUSG00000028330Ncbp110097.975ENSCSAG00000010929NCBP110097.975Chlorocebus_sabaeus
ENSMUSG00000028330Ncbp19194.915ENSCHOG00000010332NCBP19194.915Choloepus_hoffmanni
ENSMUSG00000028330Ncbp110085.535ENSCPBG00000024344NCBP19990.000Chrysemys_picta_bellii
ENSMUSG00000028330Ncbp19953.807ENSCING00000008990-9853.553Ciona_intestinalis
ENSMUSG00000028330Ncbp19952.304ENSCSAVG00000005300-9954.450Ciona_savignyi
ENSMUSG00000028330Ncbp110097.975ENSCANG00000036913NCBP110097.975Colobus_angolensis_palliatus
ENSMUSG00000028330Ncbp110098.861ENSCGRG00001015771Ncbp110098.861Cricetulus_griseus_chok1gshd
ENSMUSG00000028330Ncbp19998.846ENSCGRG00000010311Ncbp110098.846Cricetulus_griseus_crigri
ENSMUSG00000028330Ncbp19982.494ENSCSEG00000012377NCBP19982.937Cynoglossus_semilaevis
ENSMUSG00000028330Ncbp19980.881ENSCVAG00000008795NCBP19981.509Cyprinodon_variegatus
ENSMUSG00000028330Ncbp110097.089ENSDNOG00000006885NCBP110097.089Dasypus_novemcinctus
ENSMUSG00000028330Ncbp110093.577ENSDORG00000013652Ncbp110093.577Dipodomys_ordii
ENSMUSG00000028330Ncbp18332.990FBgn0038887CG79078732.990Drosophila_melanogaster
ENSMUSG00000028330Ncbp110057.019FBgn0022942Cbp8010057.500Drosophila_melanogaster
ENSMUSG00000028330Ncbp18993.450ENSETEG00000009705NCBP18993.450Echinops_telfairi
ENSMUSG00000028330Ncbp110073.836ENSEBUG00000008386NCBP110073.585Eptatretus_burgeri
ENSMUSG00000028330Ncbp110097.595ENSEASG00005022795NCBP110097.595Equus_asinus_asinus
ENSMUSG00000028330Ncbp110097.722ENSECAG00000013847NCBP110097.722Equus_caballus
ENSMUSG00000028330Ncbp19593.360ENSEEUG00000015973NCBP19992.961Erinaceus_europaeus
ENSMUSG00000028330Ncbp19980.252ENSELUG00000022519NCBP19981.006Esox_lucius
ENSMUSG00000028330Ncbp110097.975ENSFCAG00000001206NCBP110097.975Felis_catus
ENSMUSG00000028330Ncbp19888.804ENSFALG00000001193NCBP110088.931Ficedula_albicollis
ENSMUSG00000028330Ncbp110097.722ENSFDAG00000010864NCBP110097.722Fukomys_damarensis
ENSMUSG00000028330Ncbp19982.264ENSFHEG00000000655NCBP19981.761Fundulus_heteroclitus
ENSMUSG00000028330Ncbp19979.245ENSGMOG00000008653NCBP19979.245Gadus_morhua
ENSMUSG00000028330Ncbp19889.987ENSGALG00000002087NCBP110089.533Gallus_gallus
ENSMUSG00000028330Ncbp19982.890ENSGAFG00000017787NCBP19982.763Gambusia_affinis
ENSMUSG00000028330Ncbp19981.681ENSGACG00000016772NCBP19881.305Gasterosteus_aculeatus
ENSMUSG00000028330Ncbp110088.176ENSGAGG00000019483NCBP19989.722Gopherus_agassizii
ENSMUSG00000028330Ncbp110097.975ENSGGOG00000001376NCBP110097.975Gorilla_gorilla
ENSMUSG00000028330Ncbp19982.997ENSHBUG00000020843NCBP19982.620Haplochromis_burtoni
ENSMUSG00000028330Ncbp110097.848ENSHGLG00000001882NCBP110097.848Heterocephalus_glaber_female
ENSMUSG00000028330Ncbp110085.480ENSHGLG00000018112-10085.480Heterocephalus_glaber_female
ENSMUSG00000028330Ncbp110085.227ENSHGLG00100017373-10085.227Heterocephalus_glaber_male
ENSMUSG00000028330Ncbp110097.848ENSHGLG00100013014NCBP110097.848Heterocephalus_glaber_male
ENSMUSG00000028330Ncbp17972.108ENSHCOG00000000204NCBP19272.108Hippocampus_comes
ENSMUSG00000028330Ncbp19981.887ENSIPUG00000007275ncbp19981.509Ictalurus_punctatus
ENSMUSG00000028330Ncbp110098.101ENSSTOG00000002695NCBP110098.101Ictidomys_tridecemlineatus
ENSMUSG00000028330Ncbp19982.368ENSKMAG00000003594NCBP19985.976Kryptolebias_marmoratus
ENSMUSG00000028330Ncbp19980.870ENSLBEG00000011661NCBP19980.373Labrus_bergylta
ENSMUSG00000028330Ncbp110079.478ENSLACG00000013955NCBP110078.980Latimeria_chalumnae
ENSMUSG00000028330Ncbp19971.945ENSLOCG00000009579NCBP19971.945Lepisosteus_oculatus
ENSMUSG00000028330Ncbp110097.595ENSLAFG00000005999NCBP110097.595Loxodonta_africana
ENSMUSG00000028330Ncbp110097.975ENSMFAG00000030994NCBP110097.975Macaca_fascicularis
ENSMUSG00000028330Ncbp19998.074ENSMMUG00000012281NCBP19998.074Macaca_mulatta
ENSMUSG00000028330Ncbp110097.975ENSMNEG00000042790NCBP110097.975Macaca_nemestrina
ENSMUSG00000028330Ncbp110097.975ENSMLEG00000030374NCBP110097.975Mandrillus_leucophaeus
ENSMUSG00000028330Ncbp19983.123ENSMAMG00000014806NCBP19982.620Mastacembelus_armatus
ENSMUSG00000028330Ncbp19782.682ENSMZEG00005009290-9982.552Maylandia_zebra
ENSMUSG00000028330Ncbp19982.997ENSMZEG00005003469NCBP19982.620Maylandia_zebra
ENSMUSG00000028330Ncbp19998.092ENSMAUG00000020583Ncbp19998.092Mesocricetus_auratus
ENSMUSG00000028330Ncbp110097.595ENSMICG00000012682NCBP110097.595Microcebus_murinus
ENSMUSG00000028330Ncbp110098.481ENSMOCG00000015818Ncbp110098.481Microtus_ochrogaster
ENSMUSG00000028330Ncbp19182.378ENSMMOG00000002610NCBP19982.238Mola_mola
ENSMUSG00000028330Ncbp110093.165ENSMODG00000003202NCBP19992.911Monodelphis_domestica
ENSMUSG00000028330Ncbp19982.368ENSMALG00000003547NCBP19981.864Monopterus_albus
ENSMUSG00000028330Ncbp1100100.000MGP_CAROLIEiJ_G0025982Ncbp1100100.000Mus_caroli
ENSMUSG00000028330Ncbp110099.620MGP_PahariEiJ_G0028318Ncbp110099.620Mus_pahari
ENSMUSG00000028330Ncbp1100100.000MGP_SPRETEiJ_G0026945Ncbp1100100.000Mus_spretus
ENSMUSG00000028330Ncbp110098.101ENSMPUG00000006399NCBP110098.101Mustela_putorius_furo
ENSMUSG00000028330Ncbp19996.919ENSMLUG00000015201NCBP110096.919Myotis_lucifugus
ENSMUSG00000028330Ncbp110098.734ENSNGAG00000014101Ncbp110098.734Nannospalax_galili
ENSMUSG00000028330Ncbp17386.784ENSNBRG00000014674NCBP19486.784Neolamprologus_brichardi
ENSMUSG00000028330Ncbp110097.975ENSNLEG00000016909NCBP110097.975Nomascus_leucogenys
ENSMUSG00000028330Ncbp18994.144ENSMEUG00000010672NCBP19091.892Notamacropus_eugenii
ENSMUSG00000028330Ncbp18491.186ENSOPRG00000002144-8891.186Ochotona_princeps
ENSMUSG00000028330Ncbp110097.722ENSODEG00000003232NCBP110097.722Octodon_degus
ENSMUSG00000028330Ncbp19982.997ENSONIG00000001502NCBP19982.620Oreochromis_niloticus
ENSMUSG00000028330Ncbp17994.864ENSOANG00000001918NCBP110094.864Ornithorhynchus_anatinus
ENSMUSG00000028330Ncbp19897.301ENSOCUG00000013853NCBP19797.301Oryctolagus_cuniculus
ENSMUSG00000028330Ncbp19981.203ENSORLG00000011008NCBP19980.827Oryzias_latipes
ENSMUSG00000028330Ncbp19981.203ENSORLG00020017455NCBP19980.827Oryzias_latipes_hni
ENSMUSG00000028330Ncbp19981.328ENSORLG00015012127NCBP19980.952Oryzias_latipes_hsok
ENSMUSG00000028330Ncbp19981.704ENSOMEG00000020698NCBP19981.579Oryzias_melastigma
ENSMUSG00000028330Ncbp110097.980ENSOGAG00000013888NCBP110097.980Otolemur_garnettii
ENSMUSG00000028330Ncbp110097.722ENSOARG00000011233NCBP110097.722Ovis_aries
ENSMUSG00000028330Ncbp110097.975ENSPPAG00000026462NCBP110097.975Pan_paniscus
ENSMUSG00000028330Ncbp110098.101ENSPPRG00000022574NCBP110098.101Panthera_pardus
ENSMUSG00000028330Ncbp110098.101ENSPTIG00000018507NCBP110098.101Panthera_tigris_altaica
ENSMUSG00000028330Ncbp110097.975ENSPTRG00000021167NCBP110097.975Pan_troglodytes
ENSMUSG00000028330Ncbp110097.975ENSPANG00000025591NCBP110097.975Papio_anubis
ENSMUSG00000028330Ncbp110080.755ENSPKIG00000015861NCBP110080.629Paramormyrops_kingsleyae
ENSMUSG00000028330Ncbp16487.891ENSPSIG00000009558NCBP110088.086Pelodiscus_sinensis
ENSMUSG00000028330Ncbp19979.345ENSPMGG00000020476NCBP19978.841Periophthalmus_magnuspinnatus
ENSMUSG00000028330Ncbp110098.354ENSPEMG00000020105Ncbp110098.354Peromyscus_maniculatus_bairdii
ENSMUSG00000028330Ncbp110067.537ENSPMAG00000005533NCBP110067.669Petromyzon_marinus
ENSMUSG00000028330Ncbp110092.911ENSPCIG00000015800NCBP19993.293Phascolarctos_cinereus
ENSMUSG00000028330Ncbp19982.080ENSPFOG00000004158NCBP19981.704Poecilia_formosa
ENSMUSG00000028330Ncbp19982.516ENSPLAG00000020002NCBP19982.138Poecilia_latipinna
ENSMUSG00000028330Ncbp19982.516ENSPMEG00000019821NCBP19982.138Poecilia_mexicana
ENSMUSG00000028330Ncbp19982.538ENSPREG00000006035NCBP19982.161Poecilia_reticulata
ENSMUSG00000028330Ncbp110097.975ENSPPYG00000019426NCBP110097.975Pongo_abelii
ENSMUSG00000028330Ncbp19089.124ENSPCAG00000009943NCBP19089.124Procavia_capensis
ENSMUSG00000028330Ncbp18298.026ENSPCOG00000020024NCBP19898.026Propithecus_coquereli
ENSMUSG00000028330Ncbp110097.468ENSPVAG00000005924NCBP110097.468Pteropus_vampyrus
ENSMUSG00000028330Ncbp19183.101ENSPNYG00000002140NCBP19982.961Pundamilia_nyererei
ENSMUSG00000028330Ncbp19981.658ENSPNAG00000027753NCBP19981.030Pygocentrus_nattereri
ENSMUSG00000028330Ncbp110099.494ENSRNOG00000023605Ncbp110099.494Rattus_norvegicus
ENSMUSG00000028330Ncbp110097.975ENSRBIG00000043175NCBP110097.975Rhinopithecus_bieti
ENSMUSG00000028330Ncbp110097.975ENSRROG00000029767NCBP110097.975Rhinopithecus_roxellana
ENSMUSG00000028330Ncbp110098.101ENSSBOG00000019378NCBP110098.101Saimiri_boliviensis_boliviensis
ENSMUSG00000028330Ncbp16993.798ENSSHAG00000015882NCBP17393.385Sarcophilus_harrisii
ENSMUSG00000028330Ncbp19980.485ENSSFOG00015001872NCBP110080.127Scleropages_formosus
ENSMUSG00000028330Ncbp19981.234ENSSMAG00000007463NCBP19980.982Scophthalmus_maximus
ENSMUSG00000028330Ncbp19983.016ENSSDUG00000007019NCBP110082.305Seriola_dumerili
ENSMUSG00000028330Ncbp19982.746ENSSLDG00000021924NCBP19982.368Seriola_lalandi_dorsalis
ENSMUSG00000028330Ncbp18589.083ENSSARG00000007274NCBP18789.083Sorex_araneus
ENSMUSG00000028330Ncbp110081.392ENSSPUG00000008609NCBP110081.392Sphenodon_punctatus
ENSMUSG00000028330Ncbp19983.249ENSSPAG00000012550NCBP19982.872Stegastes_partitus
ENSMUSG00000028330Ncbp110097.848ENSSSCG00000005366NCBP110097.848Sus_scrofa
ENSMUSG00000028330Ncbp110083.145ENSTGUG00000001472NCBP110083.270Taeniopygia_guttata
ENSMUSG00000028330Ncbp19981.486ENSTRUG00000005287NCBP19981.108Takifugu_rubripes
ENSMUSG00000028330Ncbp110094.684ENSTBEG00000004035NCBP110094.684Tupaia_belangeri
ENSMUSG00000028330Ncbp18898.030ENSTTRG00000000507NCBP18898.030Tursiops_truncatus
ENSMUSG00000028330Ncbp110097.975ENSUAMG00000005471NCBP110097.975Ursus_americanus
ENSMUSG00000028330Ncbp19795.709ENSUMAG00000011865NCBP110097.950Ursus_maritimus
ENSMUSG00000028330Ncbp110093.671ENSVPAG00000010537NCBP110093.671Vicugna_pacos
ENSMUSG00000028330Ncbp110098.101ENSVVUG00000019725NCBP110098.101Vulpes_vulpes
ENSMUSG00000028330Ncbp110080.405ENSXETG00000010179ncbp110080.405Xenopus_tropicalis
ENSMUSG00000028330Ncbp19982.642ENSXMAG00000018253NCBP19982.264Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay21873635.IBAProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-ISOProcess
GO:0000245spliceosomal complex assembly-ISOProcess
GO:0000339RNA cap binding21873635.IBAFunction
GO:0000340RNA 7-methylguanosine cap binding-ISOFunction
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding19632182.22767893.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0005739mitochondrion-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005845mRNA cap binding complex21873635.IBAComponent
GO:0005845mRNA cap binding complex-ISOComponent
GO:0005846nuclear cap binding complex21873635.IBAComponent
GO:0005846nuclear cap binding complex-ISOComponent
GO:00063707-methylguanosine mRNA capping-ISOProcess
GO:0006397mRNA processing-IEAProcess
GO:0006406mRNA export from nucleus21873635.IBAProcess
GO:0006406mRNA export from nucleus-ISOProcess
GO:0006417regulation of translation-IEAProcess
GO:0006446regulation of translational initiation-ISOProcess
GO:0008380RNA splicing-IEAProcess
GO:0016070RNA metabolic process-IEAProcess
GO:0030307positive regulation of cell growth-ISOProcess
GO:0031047gene silencing by RNA-IEAProcess
GO:0031053primary miRNA processing21873635.IBAProcess
GO:0031442positive regulation of mRNA 3'-end processing-ISOProcess
GO:0034518RNA cap binding complex-ISOComponent
GO:0045292mRNA cis splicing, via spliceosome-IEAProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0051028mRNA transport-IEAProcess
GO:0098789pre-mRNA cleavage required for polyadenylation-ISOProcess
GO:1905216positive regulation of RNA binding-ISOProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent
GO:1990904ribonucleoprotein complex-ISOComponent

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