EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028367 (Gene tree)
Gene ID: 22166
Gene Symbol: Txn1
Alias: Trx1
Full Name: thioredoxin 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 13039
Position: chr4: 57943373-57956411
Accession: 98874
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000030051	-	1051	-	ENSMUSP00000030051	105 (aa)	-	P10639

Gene Model

Click here to download ENSMUSG00000028367's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04621	NOD-like receptor signaling pathway	KEGG
mmu05418	Fluid shear stress and atherosclerosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028367's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028367	Txn1	98	89.320	ENSG00000136810	TXN	98	89.320	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	18555775.	IGI	Process
GO:0005515	protein binding	18555775.	IPI	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005634	nucleus	11213470.18555775.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	11213470.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005829	cytosol	18555775.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006662	glycerol ether metabolic process	-	IEA	Process
GO:0009314	response to radiation	-	ISO	Process
GO:0015035	protein disulfide oxidoreductase activity	-	IEA	Function
GO:0015037	peptide disulfide oxidoreductase activity	18555775.	IDA	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0030424	axon	-	ISO	Component
GO:0030425	dendrite	-	ISO	Component
GO:0033138	positive regulation of peptidyl-serine phosphorylation	-	ISO	Process
GO:0043025	neuronal cell body	-	ISO	Component
GO:0043388	positive regulation of DNA binding	-	ISO	Process
GO:0045454	cell redox homeostasis	18555775.	IDA	Process
GO:0046826	negative regulation of protein export from nucleus	18555775.	IDA	Process
GO:0055114	oxidation-reduction process	-	ISO	Process
GO:1903206	negative regulation of hydrogen peroxide-induced cell death	-	ISO	Process