EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028409 (Gene tree)
Gene ID: 74255
Gene Symbol: Smu1
Alias: 2600001O03Rik|2610203K23Rik|SMU-1
Full Name: smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 21382
Position: chr4: 40736542-40757923
Accession: 1915546
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137415	-	260	-	-	- (aa)	-	-
ENSMUST00000130503	-	1523	-	-	- (aa)	-	-
ENSMUST00000030117	-	2418	-	ENSMUSP00000030117	513 (aa)	-	Q3UKJ7
ENSMUST00000150574	-	551	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028409's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028409	Smu1	100	100.000	ENSG00000122692	SMU1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	21873635.	IBA	Process
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component