EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028411 (Gene tree)
Gene ID: 66408
Gene Symbol: Aptx
Alias: 2410016G21Rik
Full Name: aprataxin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 20813 bases
Position: chr4:40682382-40703194
Accession: 1913658
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000103738	DcpS_C	PF11969.8	4.9e-34	1	1
ENSMUSP00000030119	DcpS_C	PF11969.8	9.8e-34	1	1
ENSMUSP00000124264	DcpS_C	PF11969.8	1e-33	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000155710	-	639	-	ENSMUSP00000124769	48 (aa)	-	E0CXB7
ENSMUST00000030119	-	5250	XM_006538166	ENSMUSP00000030119	335 (aa)	XP_006538229	Q7TQC5
ENSMUST00000068125	-	5383	-	ENSMUSP00000124264	342 (aa)	-	Q7TQC5
ENSMUST00000128810	-	355	-	-	- (aa)	-	-
ENSMUST00000108103	-	2391	-	ENSMUSP00000103738	240 (aa)	-	Q7TQC5
ENSMUST00000129021	-	1378	-	ENSMUSP00000116966	48 (aa)	-	E0CXB7

Gene Model

Click here to download ENSMUSG00000028411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028411's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028411	Aptx	99	90.659	ENSG00000137074	APTX	94	92.179	Homo_sapiens
ENSMUSG00000028411	Aptx	99	61.128	ENSAPOG00000008785	aptx	99	61.128	Acanthochromis_polyacanthus
ENSMUSG00000028411	Aptx	99	85.641	ENSAMEG00000007648	APTX	95	84.366	Ailuropoda_melanoleuca
ENSMUSG00000028411	Aptx	99	55.357	ENSACIG00000002035	aptx	99	55.357	Amphilophus_citrinellus
ENSMUSG00000028411	Aptx	99	60.961	ENSAOCG00000000634	aptx	99	60.961	Amphiprion_ocellaris
ENSMUSG00000028411	Aptx	99	60.961	ENSAPEG00000017253	aptx	99	60.961	Amphiprion_percula
ENSMUSG00000028411	Aptx	99	65.152	ENSATEG00000017383	aptx	99	60.479	Anabas_testudineus
ENSMUSG00000028411	Aptx	88	65.258	ENSAPLG00000015645	APTX	99	59.688	Anas_platyrhynchos
ENSMUSG00000028411	Aptx	99	63.000	ENSACAG00000003581	APTX	95	61.290	Anolis_carolinensis
ENSMUSG00000028411	Aptx	99	91.250	ENSANAG00000030160	APTX	99	82.477	Aotus_nancymaae
ENSMUSG00000028411	Aptx	99	60.909	ENSACLG00000018887	aptx	100	60.882	Astatotilapia_calliptera
ENSMUSG00000028411	Aptx	99	71.910	ENSAMXG00000039899	aptx	99	57.612	Astyanax_mexicanus
ENSMUSG00000028411	Aptx	99	91.803	ENSBTAG00000013947	APTX	98	83.529	Bos_taurus
ENSMUSG00000028411	Aptx	99	89.571	ENSCJAG00000007940	APTX	99	83.776	Callithrix_jacchus
ENSMUSG00000028411	Aptx	99	89.560	ENSCAFG00000001812	APTX	99	84.366	Canis_familiaris
ENSMUSG00000028411	Aptx	99	89.560	ENSCAFG00020015598	APTX	99	84.366	Canis_lupus_dingo
ENSMUSG00000028411	Aptx	99	92.308	ENSCHIG00000012896	APTX	99	84.366	Capra_hircus
ENSMUSG00000028411	Aptx	94	95.349	ENSTSYG00000003041	APTX	99	85.546	Carlito_syrichta
ENSMUSG00000028411	Aptx	99	78.992	ENSCAPG00000013470	APTX	99	92.593	Cavia_aperea
ENSMUSG00000028411	Aptx	99	92.017	ENSCPOG00000005975	APTX	99	92.017	Cavia_porcellus
ENSMUSG00000028411	Aptx	99	89.560	ENSCCAG00000036783	APTX	99	84.071	Cebus_capucinus
ENSMUSG00000028411	Aptx	99	90.184	ENSCATG00000042639	APTX	97	85.380	Cercocebus_atys
ENSMUSG00000028411	Aptx	99	92.437	ENSCLAG00000012185	APTX	99	92.437	Chinchilla_lanigera
ENSMUSG00000028411	Aptx	99	90.659	ENSCSAG00000009885	APTX	95	86.136	Chlorocebus_sabaeus
ENSMUSG00000028411	Aptx	99	77.222	ENSCPBG00000023973	APTX	97	66.000	Chrysemys_picta_bellii
ENSMUSG00000028411	Aptx	96	48.214	ENSCING00000008741	-	94	39.669	Ciona_intestinalis
ENSMUSG00000028411	Aptx	95	50.867	ENSCSAVG00000008038	-	97	40.390	Ciona_savignyi
ENSMUSG00000028411	Aptx	99	90.798	ENSCANG00000037253	APTX	99	84.661	Colobus_angolensis_palliatus
ENSMUSG00000028411	Aptx	99	94.561	ENSCGRG00001000705	Aptx	99	94.561	Cricetulus_griseus_chok1gshd
ENSMUSG00000028411	Aptx	99	94.561	ENSCGRG00000014159	Aptx	99	94.561	Cricetulus_griseus_crigri
ENSMUSG00000028411	Aptx	99	64.407	ENSCSEG00000009549	aptx	99	57.530	Cynoglossus_semilaevis
ENSMUSG00000028411	Aptx	99	63.682	ENSCVAG00000011942	aptx	99	59.226	Cyprinodon_variegatus
ENSMUSG00000028411	Aptx	99	71.910	ENSDARG00000027143	aptx	99	57.658	Danio_rerio
ENSMUSG00000028411	Aptx	99	90.608	ENSDNOG00000018498	APTX	95	83.481	Dasypus_novemcinctus
ENSMUSG00000028411	Aptx	99	92.017	ENSDORG00000002139	Aptx	99	92.017	Dipodomys_ordii
ENSMUSG00000028411	Aptx	75	40.571	FBgn0038704	CG5316	87	46.721	Drosophila_melanogaster
ENSMUSG00000028411	Aptx	75	90.556	ENSETEG00000012459	APTX	78	81.655	Echinops_telfairi
ENSMUSG00000028411	Aptx	98	58.286	ENSEBUG00000013914	aptx	95	48.276	Eptatretus_burgeri
ENSMUSG00000028411	Aptx	99	92.222	ENSEASG00005004566	APTX	99	83.776	Equus_asinus_asinus
ENSMUSG00000028411	Aptx	99	93.750	ENSECAG00000012674	APTX	92	83.776	Equus_caballus
ENSMUSG00000028411	Aptx	79	90.977	ENSEEUG00000010693	APTX	95	81.443	Erinaceus_europaeus
ENSMUSG00000028411	Aptx	99	90.625	ENSFCAG00000008728	APTX	99	84.956	Felis_catus
ENSMUSG00000028411	Aptx	99	73.481	ENSFALG00000001230	APTX	99	63.743	Ficedula_albicollis
ENSMUSG00000028411	Aptx	99	90.336	ENSFDAG00000013752	APTX	99	90.336	Fukomys_damarensis
ENSMUSG00000028411	Aptx	75	69.274	ENSFHEG00000021328	aptx	73	54.545	Fundulus_heteroclitus
ENSMUSG00000028411	Aptx	99	66.298	ENSGMOG00000012505	aptx	99	57.612	Gadus_morhua
ENSMUSG00000028411	Aptx	99	72.928	ENSGALG00000001954	APTX	99	59.714	Gallus_gallus
ENSMUSG00000028411	Aptx	99	68.889	ENSGAFG00000005086	aptx	99	58.754	Gambusia_affinis
ENSMUSG00000028411	Aptx	99	62.559	ENSGACG00000017887	aptx	99	60.119	Gasterosteus_aculeatus
ENSMUSG00000028411	Aptx	99	77.222	ENSGAGG00000013230	APTX	99	64.205	Gopherus_agassizii
ENSMUSG00000028411	Aptx	85	84.880	ENSGGOG00000014232	APTX	95	78.966	Gorilla_gorilla
ENSMUSG00000028411	Aptx	99	60.909	ENSHBUG00000021058	aptx	100	60.882	Haplochromis_burtoni
ENSMUSG00000028411	Aptx	99	89.916	ENSHGLG00000015093	APTX	99	91.525	Heterocephalus_glaber_female
ENSMUSG00000028411	Aptx	99	89.916	ENSHGLG00100013482	APTX	99	91.525	Heterocephalus_glaber_male
ENSMUSG00000028411	Aptx	99	65.789	ENSHCOG00000018216	aptx	96	58.859	Hippocampus_comes
ENSMUSG00000028411	Aptx	99	72.778	ENSIPUG00000017548	aptx	99	58.631	Ictalurus_punctatus
ENSMUSG00000028411	Aptx	99	91.176	ENSSTOG00000005185	APTX	99	91.176	Ictidomys_tridecemlineatus
ENSMUSG00000028411	Aptx	96	91.713	ENSJJAG00000015653	Aptx	99	80.838	Jaculus_jaculus
ENSMUSG00000028411	Aptx	99	58.507	ENSKMAG00000000117	aptx	99	58.507	Kryptolebias_marmoratus
ENSMUSG00000028411	Aptx	99	61.215	ENSLBEG00000015353	aptx	99	60.641	Labrus_bergylta
ENSMUSG00000028411	Aptx	99	61.957	ENSLBEG00000021489	APTX	99	53.521	Labrus_bergylta
ENSMUSG00000028411	Aptx	98	73.295	ENSLACG00000003376	APTX	99	60.563	Latimeria_chalumnae
ENSMUSG00000028411	Aptx	99	64.407	ENSLOCG00000011556	aptx	95	59.531	Lepisosteus_oculatus
ENSMUSG00000028411	Aptx	99	86.431	ENSLAFG00000005665	APTX	99	86.431	Loxodonta_africana
ENSMUSG00000028411	Aptx	99	90.659	ENSMFAG00000043141	APTX	97	85.673	Macaca_fascicularis
ENSMUSG00000028411	Aptx	99	90.798	ENSMMUG00000007724	APTX	97	85.673	Macaca_mulatta
ENSMUSG00000028411	Aptx	99	90.184	ENSMNEG00000042341	APTX	99	85.841	Macaca_nemestrina
ENSMUSG00000028411	Aptx	99	90.184	ENSMLEG00000035137	APTX	99	85.546	Mandrillus_leucophaeus
ENSMUSG00000028411	Aptx	99	62.189	ENSMAMG00000018377	aptx	99	58.683	Mastacembelus_armatus
ENSMUSG00000028411	Aptx	99	60.909	ENSMZEG00005022621	aptx	100	60.588	Maylandia_zebra
ENSMUSG00000028411	Aptx	75	72.626	ENSMGAG00000005736	APTX	99	72.626	Meleagris_gallopavo
ENSMUSG00000028411	Aptx	99	94.561	ENSMAUG00000006039	Aptx	99	94.561	Mesocricetus_auratus
ENSMUSG00000028411	Aptx	99	90.659	ENSMICG00000006603	APTX	98	84.928	Microcebus_murinus
ENSMUSG00000028411	Aptx	100	94.167	ENSMOCG00000000869	Aptx	100	94.167	Microtus_ochrogaster
ENSMUSG00000028411	Aptx	100	71.823	ENSMMOG00000007028	aptx	100	60.299	Mola_mola
ENSMUSG00000028411	Aptx	98	63.889	ENSMODG00000003365	APTX	99	61.272	Monodelphis_domestica
ENSMUSG00000028411	Aptx	99	54.192	ENSMALG00000003828	aptx	99	54.192	Monopterus_albus
ENSMUSG00000028411	Aptx	100	98.750	MGP_CAROLIEiJ_G0025897	-	100	98.750	Mus_caroli
ENSMUSG00000028411	Aptx	100	97.015	MGP_PahariEiJ_G0024020	Aptx	100	97.015	Mus_pahari
ENSMUSG00000028411	Aptx	100	99.403	MGP_SPRETEiJ_G0026846	Aptx	97	99.403	Mus_spretus
ENSMUSG00000028411	Aptx	99	89.674	ENSMPUG00000004290	APTX	99	84.661	Mustela_putorius_furo
ENSMUSG00000028411	Aptx	99	90.476	ENSMLUG00000016081	APTX	94	85.546	Myotis_lucifugus
ENSMUSG00000028411	Aptx	99	92.050	ENSNGAG00000016314	Aptx	99	92.050	Nannospalax_galili
ENSMUSG00000028411	Aptx	99	60.896	ENSNBRG00000014199	aptx	100	60.896	Neolamprologus_brichardi
ENSMUSG00000028411	Aptx	99	90.110	ENSNLEG00000032184	APTX	99	85.841	Nomascus_leucogenys
ENSMUSG00000028411	Aptx	98	74.576	ENSMEUG00000004153	APTX	98	62.463	Notamacropus_eugenii
ENSMUSG00000028411	Aptx	78	94.545	ENSOPRG00000012403	APTX	96	79.592	Ochotona_princeps
ENSMUSG00000028411	Aptx	99	75.090	ENSODEG00000000097	-	99	75.090	Octodon_degus
ENSMUSG00000028411	Aptx	99	91.176	ENSODEG00000015832	-	99	91.176	Octodon_degus
ENSMUSG00000028411	Aptx	99	60.177	ENSONIG00000014541	aptx	83	60.294	Oreochromis_niloticus
ENSMUSG00000028411	Aptx	79	81.356	ENSOANG00000009878	APTX	98	63.816	Ornithorhynchus_anatinus
ENSMUSG00000028411	Aptx	99	90.659	ENSOCUG00000000738	-	99	84.880	Oryctolagus_cuniculus
ENSMUSG00000028411	Aptx	100	91.667	ENSOCUG00000025059	-	93	91.667	Oryctolagus_cuniculus
ENSMUSG00000028411	Aptx	99	70.857	ENSORLG00000006237	aptx	99	56.395	Oryzias_latipes
ENSMUSG00000028411	Aptx	99	70.857	ENSORLG00020021478	aptx	99	56.395	Oryzias_latipes_hni
ENSMUSG00000028411	Aptx	99	71.591	ENSORLG00015021873	aptx	99	58.559	Oryzias_latipes_hsok
ENSMUSG00000028411	Aptx	99	52.836	ENSOMEG00000007875	aptx	92	52.836	Oryzias_melastigma
ENSMUSG00000028411	Aptx	99	89.560	ENSOGAG00000005388	APTX	96	83.965	Otolemur_garnettii
ENSMUSG00000028411	Aptx	99	92.308	ENSOARG00000009598	APTX	95	84.366	Ovis_aries
ENSMUSG00000028411	Aptx	99	90.659	ENSPPAG00000030295	APTX	97	85.088	Pan_paniscus
ENSMUSG00000028411	Aptx	99	90.625	ENSPPRG00000017524	APTX	99	84.956	Panthera_pardus
ENSMUSG00000028411	Aptx	99	90.625	ENSPTIG00000020000	APTX	99	84.956	Panthera_tigris_altaica
ENSMUSG00000028411	Aptx	99	90.659	ENSPTRG00000020850	APTX	99	85.546	Pan_troglodytes
ENSMUSG00000028411	Aptx	99	90.184	ENSPANG00000025301	APTX	97	85.380	Papio_anubis
ENSMUSG00000028411	Aptx	99	70.718	ENSPKIG00000013601	aptx	99	59.710	Paramormyrops_kingsleyae
ENSMUSG00000028411	Aptx	99	78.022	ENSPSIG00000010521	APTX	95	67.941	Pelodiscus_sinensis
ENSMUSG00000028411	Aptx	98	69.492	ENSPMGG00000018649	aptx	99	55.457	Periophthalmus_magnuspinnatus
ENSMUSG00000028411	Aptx	100	94.583	ENSPEMG00000007747	Aptx	100	94.583	Peromyscus_maniculatus_bairdii
ENSMUSG00000028411	Aptx	98	56.983	ENSPMAG00000008417	aptx	97	47.059	Petromyzon_marinus
ENSMUSG00000028411	Aptx	99	74.444	ENSPCIG00000029852	APTX	99	66.954	Phascolarctos_cinereus
ENSMUSG00000028411	Aptx	99	60.181	ENSPFOG00000005131	-	99	58.284	Poecilia_formosa
ENSMUSG00000028411	Aptx	99	59.729	ENSPFOG00000004992	aptx	99	57.864	Poecilia_formosa
ENSMUSG00000028411	Aptx	99	60.181	ENSPLAG00000007906	aptx	99	58.160	Poecilia_latipinna
ENSMUSG00000028411	Aptx	99	60.181	ENSPLAG00000007960	APTX	99	58.160	Poecilia_latipinna
ENSMUSG00000028411	Aptx	99	60.181	ENSPMEG00000019789	APTX	99	58.160	Poecilia_mexicana
ENSMUSG00000028411	Aptx	99	60.633	ENSPMEG00000018504	aptx	99	58.457	Poecilia_mexicana
ENSMUSG00000028411	Aptx	99	54.054	ENSPREG00000004375	aptx	99	54.054	Poecilia_reticulata
ENSMUSG00000028411	Aptx	99	90.659	ENSPPYG00000019142	APTX	95	86.136	Pongo_abelii
ENSMUSG00000028411	Aptx	97	96.610	ENSPCAG00000010014	APTX	99	72.861	Procavia_capensis
ENSMUSG00000028411	Aptx	99	91.758	ENSPCOG00000016780	APTX	99	87.611	Propithecus_coquereli
ENSMUSG00000028411	Aptx	99	87.831	ENSPVAG00000011468	APTX	96	82.596	Pteropus_vampyrus
ENSMUSG00000028411	Aptx	99	60.909	ENSPNYG00000007675	aptx	100	60.882	Pundamilia_nyererei
ENSMUSG00000028411	Aptx	99	59.809	ENSPNAG00000015984	aptx	99	54.412	Pygocentrus_nattereri
ENSMUSG00000028411	Aptx	100	97.283	ENSRNOG00000006582	Aptx	100	91.343	Rattus_norvegicus
ENSMUSG00000028411	Aptx	99	94.915	ENSRBIG00000042913	APTX	99	84.661	Rhinopithecus_bieti
ENSMUSG00000028411	Aptx	99	94.915	ENSRROG00000035395	APTX	99	84.956	Rhinopithecus_roxellana
ENSMUSG00000028411	Aptx	99	90.110	ENSSBOG00000025215	APTX	99	84.366	Saimiri_boliviensis_boliviensis
ENSMUSG00000028411	Aptx	98	74.576	ENSSHAG00000012205	APTX	94	66.766	Sarcophilus_harrisii
ENSMUSG00000028411	Aptx	99	76.536	ENSSFOG00015009267	aptx	99	61.429	Scleropages_formosus
ENSMUSG00000028411	Aptx	99	60.180	ENSSMAG00000008839	aptx	99	60.180	Scophthalmus_maximus
ENSMUSG00000028411	Aptx	99	62.326	ENSSDUG00000001989	aptx	99	59.880	Seriola_dumerili
ENSMUSG00000028411	Aptx	99	60.000	ENSSLDG00000004915	aptx	99	60.000	Seriola_lalandi_dorsalis
ENSMUSG00000028411	Aptx	99	73.481	ENSSPUG00000008994	APTX	86	64.387	Sphenodon_punctatus
ENSMUSG00000028411	Aptx	99	66.667	ENSSPAG00000020373	aptx	99	61.562	Stegastes_partitus
ENSMUSG00000028411	Aptx	99	91.209	ENSSSCG00000011001	APTX	99	85.207	Sus_scrofa
ENSMUSG00000028411	Aptx	99	71.978	ENSTGUG00000001441	APTX	99	62.130	Taeniopygia_guttata
ENSMUSG00000028411	Aptx	99	67.978	ENSTRUG00000009794	aptx	99	57.958	Takifugu_rubripes
ENSMUSG00000028411	Aptx	99	67.978	ENSTNIG00000010570	aptx	99	59.281	Tetraodon_nigroviridis
ENSMUSG00000028411	Aptx	99	93.711	ENSTBEG00000008504	APTX	95	81.416	Tupaia_belangeri
ENSMUSG00000028411	Aptx	90	93.220	ENSTTRG00000007384	APTX	95	77.918	Tursiops_truncatus
ENSMUSG00000028411	Aptx	99	90.000	ENSUAMG00000003700	APTX	99	82.709	Ursus_americanus
ENSMUSG00000028411	Aptx	99	89.011	ENSUMAG00000005837	APTX	99	83.776	Ursus_maritimus
ENSMUSG00000028411	Aptx	94	90.698	ENSVPAG00000001297	APTX	79	90.698	Vicugna_pacos
ENSMUSG00000028411	Aptx	99	89.560	ENSVVUG00000021130	APTX	99	84.366	Vulpes_vulpes
ENSMUSG00000028411	Aptx	99	72.881	ENSXETG00000024143	aptx	99	60.580	Xenopus_tropicalis
ENSMUSG00000028411	Aptx	99	69.274	ENSXCOG00000005020	aptx	99	56.000	Xiphophorus_couchianus
ENSMUSG00000028411	Aptx	99	69.444	ENSXMAG00000022086	aptx	96	59.281	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000012	single strand break repair	21873635.	IBA	Process
GO:0000012	single strand break repair	16964241.	IMP	Process
GO:0000012	single strand break repair	-	ISO	Process
GO:0000785	chromatin	-	ISO	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003684	damaged DNA binding	-	ISO	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005654	nucleoplasm	11586300.	TAS	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006266	DNA ligation	16964241.	IDA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0006302	double-strand break repair	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008967	phosphoglycolate phosphatase activity	-	ISO	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030983	mismatched DNA binding	21873635.	IBA	Function
GO:0031647	regulation of protein stability	-	ISO	Process
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	21873635.	IBA	Function
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	16964241.	IMP	Function
GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	-	ISO	Function
GO:0042542	response to hydrogen peroxide	-	ISO	Process
GO:0046403	polynucleotide 3'-phosphatase activity	-	ISO	Function
GO:0046872	metal ion binding	11586300.	TAS	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0051219	phosphoprotein binding	-	ISO	Function
GO:1990165	single-strand break-containing DNA binding	21873635.	IBA	Function