EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028423 (Gene tree)
Gene ID: 74164
Gene Symbol: Nfx1
Alias: 1300017N15Rik|3000003M19Rik|TEG-42|Tex42
Full Name: nuclear transcription factor%2C X-box binding 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 55088 bases
Position: chr4:40970906-41025993
Accession: 1921414
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000095747	R3H	PF01424.22	1.6e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000131305	-	623	-	-	- (aa)	-	-
ENSMUST00000030133	-	4349	-	ENSMUSP00000030133	818 (aa)	-	B1AY10
ENSMUST00000143798	-	1009	-	-	- (aa)	-	-
ENSMUST00000136717	-	859	-	-	- (aa)	-	-
ENSMUST00000124595	-	1316	-	-	- (aa)	-	-
ENSMUST00000098143	-	4594	-	ENSMUSP00000095747	1114 (aa)	-	B1AY10
ENSMUST00000091614	-	3617	XM_006538319	ENSMUSP00000089203	804 (aa)	XP_006538382	B1AY10

Gene Model

Click here to download ENSMUSG00000028423's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu05165	Human papillomavirus infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028423's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028423	Nfx1	100	88.214	ENSG00000086102	NFX1	100	88.214	Homo_sapiens
ENSMUSG00000028423	Nfx1	73	66.015	ENSAPOG00000016671	si:dkey-10f23.2	76	66.015	Acanthochromis_polyacanthus
ENSMUSG00000028423	Nfx1	100	87.857	ENSAMEG00000007472	NFX1	100	87.857	Ailuropoda_melanoleuca
ENSMUSG00000028423	Nfx1	73	64.059	ENSACIG00000021055	si:dkey-10f23.2	77	64.303	Amphilophus_citrinellus
ENSMUSG00000028423	Nfx1	73	66.137	ENSAOCG00000017316	si:dkey-10f23.2	81	66.137	Amphiprion_ocellaris
ENSMUSG00000028423	Nfx1	73	65.770	ENSAPEG00000012401	si:dkey-10f23.2	79	65.770	Amphiprion_percula
ENSMUSG00000028423	Nfx1	75	61.979	ENSATEG00000002080	si:dkey-10f23.2	75	62.409	Anabas_testudineus
ENSMUSG00000028423	Nfx1	99	59.230	ENSAPLG00000005524	NFX1	99	60.070	Anas_platyrhynchos
ENSMUSG00000028423	Nfx1	100	59.191	ENSACAG00000002412	NFX1	100	58.663	Anolis_carolinensis
ENSMUSG00000028423	Nfx1	100	87.957	ENSANAG00000001809	NFX1	100	87.957	Aotus_nancymaae
ENSMUSG00000028423	Nfx1	72	66.625	ENSACLG00000003795	si:dkey-10f23.2	75	66.625	Astatotilapia_calliptera
ENSMUSG00000028423	Nfx1	71	62.705	ENSAMXG00000006963	si:dkey-10f23.2	71	62.705	Astyanax_mexicanus
ENSMUSG00000028423	Nfx1	100	86.786	ENSBTAG00000012385	NFX1	100	86.339	Bos_taurus
ENSMUSG00000028423	Nfx1	71	38.806	WBGene00007048	nfx-1	70	38.396	Caenorhabditis_elegans
ENSMUSG00000028423	Nfx1	100	88.382	ENSCJAG00000008142	NFX1	100	88.382	Callithrix_jacchus
ENSMUSG00000028423	Nfx1	100	88.068	ENSCAFG00000001848	NFX1	100	88.068	Canis_familiaris
ENSMUSG00000028423	Nfx1	100	88.382	ENSCAFG00020015630	NFX1	100	88.382	Canis_lupus_dingo
ENSMUSG00000028423	Nfx1	100	86.964	ENSCHIG00000020037	NFX1	100	86.518	Capra_hircus
ENSMUSG00000028423	Nfx1	100	87.946	ENSTSYG00000004125	NFX1	100	88.393	Carlito_syrichta
ENSMUSG00000028423	Nfx1	87	80.326	ENSCAPG00000005611	NFX1	100	80.326	Cavia_aperea
ENSMUSG00000028423	Nfx1	100	88.025	ENSCPOG00000003470	NFX1	100	88.025	Cavia_porcellus
ENSMUSG00000028423	Nfx1	100	88.214	ENSCCAG00000025001	NFX1	100	88.214	Cebus_capucinus
ENSMUSG00000028423	Nfx1	100	83.646	ENSCLAG00000002893	NFX1	100	84.629	Chinchilla_lanigera
ENSMUSG00000028423	Nfx1	100	88.125	ENSCSAG00000009971	NFX1	100	88.125	Chlorocebus_sabaeus
ENSMUSG00000028423	Nfx1	89	84.314	ENSCHOG00000009225	NFX1	91	84.314	Choloepus_hoffmanni
ENSMUSG00000028423	Nfx1	99	63.228	ENSCPBG00000017928	NFX1	98	62.787	Chrysemys_picta_bellii
ENSMUSG00000028423	Nfx1	72	47.095	ENSCING00000004746	nf-x-like	70	47.226	Ciona_intestinalis
ENSMUSG00000028423	Nfx1	72	46.552	ENSCSAVG00000005762	-	71	46.552	Ciona_savignyi
ENSMUSG00000028423	Nfx1	100	85.409	ENSCANG00000028364	NFX1	100	85.409	Colobus_angolensis_palliatus
ENSMUSG00000028423	Nfx1	99	89.241	ENSCGRG00001002869	Nfx1	100	89.241	Cricetulus_griseus_chok1gshd
ENSMUSG00000028423	Nfx1	99	93.213	ENSCGRG00000016032	Nfx1	100	93.213	Cricetulus_griseus_crigri
ENSMUSG00000028423	Nfx1	71	63.851	ENSCSEG00000019832	si:dkey-10f23.2	77	64.422	Cynoglossus_semilaevis
ENSMUSG00000028423	Nfx1	72	66.501	ENSCVAG00000010039	si:dkey-10f23.2	75	66.501	Cyprinodon_variegatus
ENSMUSG00000028423	Nfx1	73	63.030	ENSDARG00000105669	NFX1	100	51.144	Danio_rerio
ENSMUSG00000028423	Nfx1	100	82.740	ENSDNOG00000002079	NFX1	100	82.740	Dasypus_novemcinctus
ENSMUSG00000028423	Nfx1	99	82.749	ENSDORG00000001989	Nfx1	99	82.749	Dipodomys_ordii
ENSMUSG00000028423	Nfx1	71	42.099	FBgn0001978	stc	69	42.018	Drosophila_melanogaster
ENSMUSG00000028423	Nfx1	97	82.418	ENSETEG00000001427	NFX1	95	82.418	Echinops_telfairi
ENSMUSG00000028423	Nfx1	73	54.811	ENSEBUG00000006923	si:dkey-10f23.2	62	55.431	Eptatretus_burgeri
ENSMUSG00000028423	Nfx1	100	87.232	ENSEASG00005004230	NFX1	93	87.232	Equus_asinus_asinus
ENSMUSG00000028423	Nfx1	100	87.143	ENSECAG00000021305	NFX1	93	87.143	Equus_caballus
ENSMUSG00000028423	Nfx1	96	87.119	ENSEEUG00000001694	NFX1	88	87.119	Erinaceus_europaeus
ENSMUSG00000028423	Nfx1	70	62.817	ENSELUG00000007422	si:dkey-10f23.2	70	62.437	Esox_lucius
ENSMUSG00000028423	Nfx1	100	87.578	ENSFCAG00000007905	NFX1	100	87.578	Felis_catus
ENSMUSG00000028423	Nfx1	99	60.689	ENSFALG00000013143	NFX1	99	60.281	Ficedula_albicollis
ENSMUSG00000028423	Nfx1	100	89.008	ENSFDAG00000012320	NFX1	100	89.008	Fukomys_damarensis
ENSMUSG00000028423	Nfx1	71	66.582	ENSFHEG00000017330	si:dkey-10f23.2	73	66.582	Fundulus_heteroclitus
ENSMUSG00000028423	Nfx1	66	63.415	ENSGMOG00000006198	si:dkey-10f23.2	99	63.415	Gadus_morhua
ENSMUSG00000028423	Nfx1	100	59.947	ENSGALG00000043724	NFX1	100	59.597	Gallus_gallus
ENSMUSG00000028423	Nfx1	72	64.472	ENSGAFG00000000226	si:dkey-10f23.2	76	64.472	Gambusia_affinis
ENSMUSG00000028423	Nfx1	66	64.564	ENSGACG00000004560	si:dkey-10f23.2	98	64.382	Gasterosteus_aculeatus
ENSMUSG00000028423	Nfx1	100	88.214	ENSGGOG00000006751	NFX1	100	88.214	Gorilla_gorilla
ENSMUSG00000028423	Nfx1	72	66.501	ENSHBUG00000015403	si:dkey-10f23.2	75	66.501	Haplochromis_burtoni
ENSMUSG00000028423	Nfx1	100	89.187	ENSHGLG00000008375	NFX1	100	89.187	Heterocephalus_glaber_female
ENSMUSG00000028423	Nfx1	100	89.187	ENSHGLG00100016433	NFX1	100	89.187	Heterocephalus_glaber_male
ENSMUSG00000028423	Nfx1	71	64.691	ENSHCOG00000001235	si:dkey-10f23.2	78	64.691	Hippocampus_comes
ENSMUSG00000028423	Nfx1	70	65.478	ENSIPUG00000005961	si:dkey-10f23.2	72	65.478	Ictalurus_punctatus
ENSMUSG00000028423	Nfx1	100	89.187	ENSSTOG00000006984	NFX1	100	89.187	Ictidomys_tridecemlineatus
ENSMUSG00000028423	Nfx1	100	88.630	ENSJJAG00000023303	Nfx1	100	88.630	Jaculus_jaculus
ENSMUSG00000028423	Nfx1	86	57.792	ENSKMAG00000016306	si:dkey-10f23.2	92	55.598	Kryptolebias_marmoratus
ENSMUSG00000028423	Nfx1	71	61.993	ENSLBEG00000013253	si:dkey-10f23.2	73	61.993	Labrus_bergylta
ENSMUSG00000028423	Nfx1	99	57.867	ENSLACG00000000769	NFX1	98	62.414	Latimeria_chalumnae
ENSMUSG00000028423	Nfx1	98	54.350	ENSLOCG00000011211	si:dkey-10f23.2	91	69.066	Lepisosteus_oculatus
ENSMUSG00000028423	Nfx1	100	88.125	ENSMFAG00000038715	NFX1	100	88.125	Macaca_fascicularis
ENSMUSG00000028423	Nfx1	100	88.036	ENSMMUG00000043096	NFX1	100	88.036	Macaca_mulatta
ENSMUSG00000028423	Nfx1	100	88.125	ENSMNEG00000036057	NFX1	100	88.125	Macaca_nemestrina
ENSMUSG00000028423	Nfx1	100	88.125	ENSMLEG00000040882	NFX1	100	88.125	Mandrillus_leucophaeus
ENSMUSG00000028423	Nfx1	78	60.978	ENSMAMG00000010139	si:dkey-10f23.2	80	60.978	Mastacembelus_armatus
ENSMUSG00000028423	Nfx1	72	66.625	ENSMZEG00005018390	si:dkey-10f23.2	75	66.625	Maylandia_zebra
ENSMUSG00000028423	Nfx1	100	85.370	ENSMICG00000012124	NFX1	100	85.370	Microcebus_murinus
ENSMUSG00000028423	Nfx1	100	92.190	ENSMOCG00000007616	Nfx1	100	92.190	Microtus_ochrogaster
ENSMUSG00000028423	Nfx1	75	60.495	ENSMMOG00000004171	si:dkey-10f23.2	92	60.495	Mola_mola
ENSMUSG00000028423	Nfx1	100	70.071	ENSMODG00000003990	NFX1	100	70.071	Monodelphis_domestica
ENSMUSG00000028423	Nfx1	81	59.433	ENSMALG00000017326	si:dkey-10f23.2	98	59.433	Monopterus_albus
ENSMUSG00000028423	Nfx1	100	98.564	MGP_CAROLIEiJ_G0025904	Nfx1	100	98.564	Mus_caroli
ENSMUSG00000028423	Nfx1	100	97.487	MGP_PahariEiJ_G0024027	Nfx1	100	97.487	Mus_pahari
ENSMUSG00000028423	Nfx1	100	99.372	MGP_SPRETEiJ_G0026852	Nfx1	100	99.372	Mus_spretus
ENSMUSG00000028423	Nfx1	100	88.114	ENSMPUG00000004111	NFX1	100	88.114	Mustela_putorius_furo
ENSMUSG00000028423	Nfx1	100	86.234	ENSMLUG00000011069	NFX1	100	85.702	Myotis_lucifugus
ENSMUSG00000028423	Nfx1	100	91.293	ENSNGAG00000005385	Nfx1	100	91.293	Nannospalax_galili
ENSMUSG00000028423	Nfx1	72	66.295	ENSNBRG00000013449	si:dkey-10f23.2	75	66.295	Neolamprologus_brichardi
ENSMUSG00000028423	Nfx1	100	87.946	ENSNLEG00000005096	NFX1	100	87.946	Nomascus_leucogenys
ENSMUSG00000028423	Nfx1	99	72.048	ENSMEUG00000012002	NFX1	94	72.048	Notamacropus_eugenii
ENSMUSG00000028423	Nfx1	100	76.517	ENSOPRG00000009816	NFX1	100	76.629	Ochotona_princeps
ENSMUSG00000028423	Nfx1	100	88.025	ENSODEG00000015229	NFX1	100	88.025	Octodon_degus
ENSMUSG00000028423	Nfx1	71	65.414	ENSONIG00000006192	si:dkey-10f23.2	71	66.023	Oreochromis_niloticus
ENSMUSG00000028423	Nfx1	100	56.261	ENSOANG00000002524	NFX1	100	56.261	Ornithorhynchus_anatinus
ENSMUSG00000028423	Nfx1	100	83.646	ENSOCUG00000008957	NFX1	100	84.004	Oryctolagus_cuniculus
ENSMUSG00000028423	Nfx1	78	61.187	ENSORLG00000026662	si:dkey-10f23.2	86	61.187	Oryzias_latipes
ENSMUSG00000028423	Nfx1	78	61.644	ENSORLG00020000170	si:dkey-10f23.2	86	61.644	Oryzias_latipes_hni
ENSMUSG00000028423	Nfx1	78	61.301	ENSORLG00015008191	si:dkey-10f23.2	80	61.301	Oryzias_latipes_hsok
ENSMUSG00000028423	Nfx1	78	61.872	ENSOMEG00000001814	si:dkey-10f23.2	83	61.872	Oryzias_melastigma
ENSMUSG00000028423	Nfx1	100	85.089	ENSOGAG00000000775	NFX1	100	85.089	Otolemur_garnettii
ENSMUSG00000028423	Nfx1	100	86.708	ENSOARG00000009478	NFX1	100	86.262	Ovis_aries
ENSMUSG00000028423	Nfx1	100	88.214	ENSPPAG00000027871	NFX1	100	88.214	Pan_paniscus
ENSMUSG00000028423	Nfx1	100	87.846	ENSPPRG00000000665	NFX1	100	87.846	Panthera_pardus
ENSMUSG00000028423	Nfx1	100	87.846	ENSPTIG00000012443	NFX1	100	87.846	Panthera_tigris_altaica
ENSMUSG00000028423	Nfx1	100	88.214	ENSPTRG00000020858	NFX1	100	88.214	Pan_troglodytes
ENSMUSG00000028423	Nfx1	100	88.036	ENSPANG00000025304	NFX1	100	88.036	Papio_anubis
ENSMUSG00000028423	Nfx1	71	67.718	ENSPKIG00000016899	si:dkey-10f23.2	100	53.076	Paramormyrops_kingsleyae
ENSMUSG00000028423	Nfx1	99	62.193	ENSPSIG00000008420	NFX1	99	61.754	Pelodiscus_sinensis
ENSMUSG00000028423	Nfx1	100	93.806	ENSPEMG00000007625	Nfx1	100	93.806	Peromyscus_maniculatus_bairdii
ENSMUSG00000028423	Nfx1	70	56.195	ENSPMAG00000003556	si:dkey-10f23.2	100	56.195	Petromyzon_marinus
ENSMUSG00000028423	Nfx1	77	61.822	ENSPFOG00000012547	si:dkey-10f23.2	80	61.822	Poecilia_formosa
ENSMUSG00000028423	Nfx1	72	64.596	ENSPLAG00000010574	si:dkey-10f23.2	80	61.949	Poecilia_latipinna
ENSMUSG00000028423	Nfx1	72	64.969	ENSPMEG00000015322	si:dkey-10f23.2	76	64.969	Poecilia_mexicana
ENSMUSG00000028423	Nfx1	72	65.217	ENSPREG00000006186	si:dkey-10f23.2	75	65.217	Poecilia_reticulata
ENSMUSG00000028423	Nfx1	63	93.400	ENSPPYG00000019136	-	100	93.400	Pongo_abelii
ENSMUSG00000028423	Nfx1	99	70.631	ENSPCAG00000006913	NFX1	100	70.631	Procavia_capensis
ENSMUSG00000028423	Nfx1	100	88.036	ENSPCOG00000015789	NFX1	100	88.036	Propithecus_coquereli
ENSMUSG00000028423	Nfx1	100	79.732	ENSPVAG00000011479	NFX1	100	79.732	Pteropus_vampyrus
ENSMUSG00000028423	Nfx1	72	66.501	ENSPNYG00000002175	si:dkey-10f23.2	75	66.501	Pundamilia_nyererei
ENSMUSG00000028423	Nfx1	71	63.843	ENSPNAG00000016667	si:dkey-10f23.2	71	63.843	Pygocentrus_nattereri
ENSMUSG00000028423	Nfx1	100	96.320	ENSRNOG00000009015	Nfx1	100	96.320	Rattus_norvegicus
ENSMUSG00000028423	Nfx1	100	62.104	ENSRBIG00000036482	NFX1	100	73.820	Rhinopithecus_bieti
ENSMUSG00000028423	Nfx1	100	88.214	ENSRROG00000026461	NFX1	100	88.214	Rhinopithecus_roxellana
ENSMUSG00000028423	Nfx1	100	79.643	ENSSBOG00000035261	NFX1	100	79.643	Saimiri_boliviensis_boliviensis
ENSMUSG00000028423	Nfx1	100	69.823	ENSSHAG00000010272	NFX1	100	69.823	Sarcophilus_harrisii
ENSMUSG00000028423	Nfx1	100	53.362	ENSSFOG00015019271	si:dkey-10f23.2	100	53.362	Scleropages_formosus
ENSMUSG00000028423	Nfx1	74	63.758	ENSSMAG00000015963	si:dkey-10f23.2	78	63.758	Scophthalmus_maximus
ENSMUSG00000028423	Nfx1	75	63.669	ENSSDUG00000009395	si:dkey-10f23.2	94	53.659	Seriola_dumerili
ENSMUSG00000028423	Nfx1	75	63.789	ENSSLDG00000023817	si:dkey-10f23.2	80	61.211	Seriola_lalandi_dorsalis
ENSMUSG00000028423	Nfx1	72	96.875	ENSSARG00000014320	NFX1	82	96.875	Sorex_araneus
ENSMUSG00000028423	Nfx1	74	65.170	ENSSPAG00000012861	si:dkey-10f23.2	76	65.170	Stegastes_partitus
ENSMUSG00000028423	Nfx1	100	84.403	ENSSSCG00000010994	NFX1	100	84.403	Sus_scrofa
ENSMUSG00000028423	Nfx1	71	66.751	ENSTGUG00000007055	NFX1	100	66.498	Taeniopygia_guttata
ENSMUSG00000028423	Nfx1	62	88.710	ENSTBEG00000004560	NFX1	59	88.710	Tupaia_belangeri
ENSMUSG00000028423	Nfx1	100	90.909	ENSTTRG00000010576	NFX1	93	90.909	Tursiops_truncatus
ENSMUSG00000028423	Nfx1	100	88.114	ENSUMAG00000006016	NFX1	100	88.114	Ursus_maritimus
ENSMUSG00000028423	Nfx1	100	88.125	ENSVVUG00000021100	NFX1	100	88.125	Vulpes_vulpes
ENSMUSG00000028423	Nfx1	99	57.632	ENSXETG00000014997	nfx1	100	57.632	Xenopus_tropicalis
ENSMUSG00000028423	Nfx1	72	64.596	ENSXMAG00000001963	si:dkey-10f23.2	76	64.596	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	12047746.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0005515	protein binding	11331592.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0045347	negative regulation of MHC class II biosynthetic process	12047746.	IDA	Process
GO:0046872	metal ion binding	-	IEA	Function