EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028430 (Gene tree)
Gene ID: 230082
Gene Symbol: Nol6
Alias: Nrap
Full Name: nucleolar protein family 6 (RNA-associated)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 10029 bases
Position: chr4:41114427-41124455
Accession: 2140151
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000030138	Nrap	PF03813.14	2.4e-41	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000129112	-	774	-	-	- (aa)	-	-
ENSMUST00000155315	-	474	-	-	- (aa)	-	-
ENSMUST00000030138	-	4599	-	ENSMUSP00000030138	1152 (aa)	-	Q8R5K4
ENSMUST00000135059	-	700	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028430's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028430's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028430	Nol6	99	85.253	ENSG00000165271	NOL6	100	89.000	Homo_sapiens
ENSMUSG00000028430	Nol6	98	51.396	ENSAPOG00000002135	nol6	99	51.396	Acanthochromis_polyacanthus
ENSMUSG00000028430	Nol6	99	83.910	ENSAMEG00000007364	NOL6	99	84.083	Ailuropoda_melanoleuca
ENSMUSG00000028430	Nol6	97	53.357	ENSACIG00000018888	nol6	99	53.357	Amphilophus_citrinellus
ENSMUSG00000028430	Nol6	83	52.752	ENSAOCG00000002591	NOL6	99	53.088	Amphiprion_ocellaris
ENSMUSG00000028430	Nol6	98	50.962	ENSAOCG00000006894	nol6	99	50.962	Amphiprion_ocellaris
ENSMUSG00000028430	Nol6	95	53.048	ENSAPEG00000017733	nol6	99	53.048	Amphiprion_percula
ENSMUSG00000028430	Nol6	93	52.870	ENSATEG00000003713	nol6	98	52.870	Anabas_testudineus
ENSMUSG00000028430	Nol6	92	59.256	ENSAPLG00000003837	NOL6	100	60.000	Anas_platyrhynchos
ENSMUSG00000028430	Nol6	97	60.036	ENSACAG00000012749	-	99	59.666	Anolis_carolinensis
ENSMUSG00000028430	Nol6	97	84.916	ENSANAG00000019320	NOL6	100	84.916	Aotus_nancymaae
ENSMUSG00000028430	Nol6	97	52.889	ENSACLG00000006141	nol6	98	52.889	Astatotilapia_calliptera
ENSMUSG00000028430	Nol6	98	50.834	ENSAMXG00000007881	nol6	99	50.834	Astyanax_mexicanus
ENSMUSG00000028430	Nol6	99	82.723	ENSBTAG00000003323	NOL6	100	82.723	Bos_taurus
ENSMUSG00000028430	Nol6	99	84.031	ENSCJAG00000008222	NOL6	100	86.085	Callithrix_jacchus
ENSMUSG00000028430	Nol6	99	83.595	ENSCAFG00000001869	NOL6	100	83.770	Canis_familiaris
ENSMUSG00000028430	Nol6	99	82.333	ENSCAFG00020015767	NOL6	99	83.260	Canis_lupus_dingo
ENSMUSG00000028430	Nol6	99	82.635	ENSCHIG00000011813	NOL6	100	82.635	Capra_hircus
ENSMUSG00000028430	Nol6	99	84.293	ENSTSYG00000008125	NOL6	100	87.037	Carlito_syrichta
ENSMUSG00000028430	Nol6	97	80.072	ENSCAPG00000011587	NOL6	99	80.072	Cavia_aperea
ENSMUSG00000028430	Nol6	99	83.595	ENSCPOG00000012282	NOL6	100	83.595	Cavia_porcellus
ENSMUSG00000028430	Nol6	99	84.642	ENSCCAG00000022349	NOL6	100	84.642	Cebus_capucinus
ENSMUSG00000028430	Nol6	99	85.739	ENSCATG00000031690	NOL6	100	86.000	Cercocebus_atys
ENSMUSG00000028430	Nol6	88	88.858	ENSCLAG00000002096	NOL6	99	88.858	Chinchilla_lanigera
ENSMUSG00000028430	Nol6	99	85.166	ENSCSAG00000009990	NOL6	100	85.166	Chlorocebus_sabaeus
ENSMUSG00000028430	Nol6	99	62.619	ENSCPBG00000005864	NOL6	100	62.619	Chrysemys_picta_bellii
ENSMUSG00000028430	Nol6	95	37.192	ENSCSAVG00000003332	-	100	37.192	Ciona_savignyi
ENSMUSG00000028430	Nol6	99	85.428	ENSCANG00000017993	NOL6	100	86.000	Colobus_angolensis_palliatus
ENSMUSG00000028430	Nol6	99	89.248	ENSCGRG00001020245	Nol6	100	89.248	Cricetulus_griseus_chok1gshd
ENSMUSG00000028430	Nol6	92	92.739	ENSCGRG00000014588	Nol6	100	92.739	Cricetulus_griseus_crigri
ENSMUSG00000028430	Nol6	96	53.694	ENSCVAG00000019497	nol6	97	53.694	Cyprinodon_variegatus
ENSMUSG00000028430	Nol6	97	51.740	ENSDARG00000059711	nol6	97	51.740	Danio_rerio
ENSMUSG00000028430	Nol6	99	76.079	ENSDNOG00000003382	NOL6	100	76.079	Dasypus_novemcinctus
ENSMUSG00000028430	Nol6	99	85.577	ENSDORG00000006018	Nol6	100	85.577	Dipodomys_ordii
ENSMUSG00000028430	Nol6	95	33.333	FBgn0261286	Mat89Ba	91	33.333	Drosophila_melanogaster
ENSMUSG00000028430	Nol6	89	82.260	ENSETEG00000003875	NOL6	90	82.260	Echinops_telfairi
ENSMUSG00000028430	Nol6	88	38.734	ENSEBUG00000005711	nol6	94	39.191	Eptatretus_burgeri
ENSMUSG00000028430	Nol6	99	83.944	ENSEASG00005004206	NOL6	100	84.119	Equus_asinus_asinus
ENSMUSG00000028430	Nol6	99	84.206	ENSECAG00000007914	NOL6	100	84.380	Equus_caballus
ENSMUSG00000028430	Nol6	99	52.493	ENSELUG00000017818	nol6	99	52.493	Esox_lucius
ENSMUSG00000028430	Nol6	99	84.729	ENSFCAG00000006677	NOL6	100	84.729	Felis_catus
ENSMUSG00000028430	Nol6	83	60.892	ENSFALG00000009997	NOL6	100	60.892	Ficedula_albicollis
ENSMUSG00000028430	Nol6	99	84.031	ENSFDAG00000009930	NOL6	100	84.031	Fukomys_damarensis
ENSMUSG00000028430	Nol6	98	51.832	ENSFHEG00000007788	nol6	99	51.832	Fundulus_heteroclitus
ENSMUSG00000028430	Nol6	96	52.745	ENSGMOG00000000637	nol6	98	52.745	Gadus_morhua
ENSMUSG00000028430	Nol6	96	61.386	ENSGALG00000030730	NOL6	97	61.386	Gallus_gallus
ENSMUSG00000028430	Nol6	98	52.539	ENSGAFG00000009378	nol6	99	52.539	Gambusia_affinis
ENSMUSG00000028430	Nol6	97	52.538	ENSGACG00000010296	nol6	99	52.538	Gasterosteus_aculeatus
ENSMUSG00000028430	Nol6	98	62.301	ENSGAGG00000019996	NOL6	99	62.301	Gopherus_agassizii
ENSMUSG00000028430	Nol6	99	85.253	ENSGGOG00000003997	NOL6	100	86.000	Gorilla_gorilla
ENSMUSG00000028430	Nol6	97	52.978	ENSHBUG00000010058	nol6	98	52.978	Haplochromis_burtoni
ENSMUSG00000028430	Nol6	99	83.854	ENSHGLG00000009478	NOL6	99	83.854	Heterocephalus_glaber_female
ENSMUSG00000028430	Nol6	99	83.854	ENSHGLG00100014962	NOL6	99	83.854	Heterocephalus_glaber_male
ENSMUSG00000028430	Nol6	96	50.089	ENSHCOG00000020017	nol6	99	50.089	Hippocampus_comes
ENSMUSG00000028430	Nol6	98	51.092	ENSIPUG00000018266	nol6	99	51.092	Ictalurus_punctatus
ENSMUSG00000028430	Nol6	99	83.767	ENSSTOG00000015854	NOL6	99	83.767	Ictidomys_tridecemlineatus
ENSMUSG00000028430	Nol6	99	84.568	ENSJJAG00000024225	Nol6	99	84.568	Jaculus_jaculus
ENSMUSG00000028430	Nol6	97	52.910	ENSKMAG00000004749	nol6	99	52.910	Kryptolebias_marmoratus
ENSMUSG00000028430	Nol6	97	51.115	ENSLBEG00000006902	nol6	98	51.115	Labrus_bergylta
ENSMUSG00000028430	Nol6	71	51.023	ENSLACG00000006368	NOL6	99	51.023	Latimeria_chalumnae
ENSMUSG00000028430	Nol6	96	50.135	ENSLOCG00000004991	nol6	100	49.822	Lepisosteus_oculatus
ENSMUSG00000028430	Nol6	99	82.726	ENSLAFG00000004990	NOL6	100	82.624	Loxodonta_africana
ENSMUSG00000028430	Nol6	99	85.428	ENSMFAG00000040117	NOL6	100	86.000	Macaca_fascicularis
ENSMUSG00000028430	Nol6	99	85.515	ENSMMUG00000000389	NOL6	100	86.000	Macaca_mulatta
ENSMUSG00000028430	Nol6	99	85.428	ENSMNEG00000040252	NOL6	100	86.000	Macaca_nemestrina
ENSMUSG00000028430	Nol6	99	85.602	ENSMLEG00000043468	NOL6	100	86.000	Mandrillus_leucophaeus
ENSMUSG00000028430	Nol6	98	52.327	ENSMAMG00000011484	nol6	99	52.327	Mastacembelus_armatus
ENSMUSG00000028430	Nol6	97	52.889	ENSMZEG00005014058	nol6	98	52.889	Maylandia_zebra
ENSMUSG00000028430	Nol6	88	52.867	ENSMGAG00000016978	NOL6	100	52.867	Meleagris_gallopavo
ENSMUSG00000028430	Nol6	62	88.920	ENSMAUG00000010790	Nol6	100	88.920	Mesocricetus_auratus
ENSMUSG00000028430	Nol6	99	85.428	ENSMICG00000012157	NOL6	100	86.000	Microcebus_murinus
ENSMUSG00000028430	Nol6	100	87.847	ENSMOCG00000010981	Nol6	100	87.847	Microtus_ochrogaster
ENSMUSG00000028430	Nol6	98	52.502	ENSMMOG00000005625	nol6	99	52.502	Mola_mola
ENSMUSG00000028430	Nol6	99	69.660	ENSMODG00000003802	NOL6	98	69.660	Monodelphis_domestica
ENSMUSG00000028430	Nol6	96	53.153	ENSMALG00000009130	nol6	97	53.153	Monopterus_albus
ENSMUSG00000028430	Nol6	99	99.124	MGP_CAROLIEiJ_G0025907	Nol6	100	99.124	Mus_caroli
ENSMUSG00000028430	Nol6	100	97.656	MGP_PahariEiJ_G0024030	Nol6	100	97.656	Mus_pahari
ENSMUSG00000028430	Nol6	100	99.392	MGP_SPRETEiJ_G0026855	Nol6	100	99.392	Mus_spretus
ENSMUSG00000028430	Nol6	99	79.585	ENSMPUG00000003922	NOL6	99	79.844	Mustela_putorius_furo
ENSMUSG00000028430	Nol6	99	82.759	ENSMLUG00000003230	NOL6	99	82.931	Myotis_lucifugus
ENSMUSG00000028430	Nol6	99	87.074	ENSNGAG00000017803	Nol6	99	87.074	Nannospalax_galili
ENSMUSG00000028430	Nol6	97	52.440	ENSNBRG00000001435	nol6	98	52.440	Neolamprologus_brichardi
ENSMUSG00000028430	Nol6	99	81.865	ENSNLEG00000005056	NOL6	100	82.211	Nomascus_leucogenys
ENSMUSG00000028430	Nol6	98	67.936	ENSMEUG00000004232	NOL6	99	67.936	Notamacropus_eugenii
ENSMUSG00000028430	Nol6	97	80.585	ENSOPRG00000016817	NOL6	100	80.851	Ochotona_princeps
ENSMUSG00000028430	Nol6	99	83.101	ENSODEG00000015856	NOL6	99	83.101	Octodon_degus
ENSMUSG00000028430	Nol6	97	52.894	ENSONIG00000015951	nol6	98	52.894	Oreochromis_niloticus
ENSMUSG00000028430	Nol6	81	50.999	ENSOANG00000010217	-	100	51.268	Ornithorhynchus_anatinus
ENSMUSG00000028430	Nol6	99	83.203	ENSOCUG00000026918	NOL6	99	83.203	Oryctolagus_cuniculus
ENSMUSG00000028430	Nol6	96	53.195	ENSORLG00000010159	nol6	98	53.195	Oryzias_latipes
ENSMUSG00000028430	Nol6	96	52.925	ENSORLG00015023273	nol6	98	52.925	Oryzias_latipes_hsok
ENSMUSG00000028430	Nol6	98	52.067	ENSOMEG00000006877	nol6	99	52.067	Oryzias_melastigma
ENSMUSG00000028430	Nol6	99	83.508	ENSOGAG00000014354	NOL6	100	83.508	Otolemur_garnettii
ENSMUSG00000028430	Nol6	99	82.639	ENSOARG00000009424	NOL6	99	82.639	Ovis_aries
ENSMUSG00000028430	Nol6	99	85.166	ENSPPAG00000040840	NOL6	100	85.166	Pan_paniscus
ENSMUSG00000028430	Nol6	99	84.468	ENSPPRG00000003583	NOL6	100	84.468	Panthera_pardus
ENSMUSG00000028430	Nol6	99	84.206	ENSPTIG00000002752	NOL6	100	84.206	Panthera_tigris_altaica
ENSMUSG00000028430	Nol6	99	85.079	ENSPTRG00000020861	NOL6	100	86.000	Pan_troglodytes
ENSMUSG00000028430	Nol6	99	85.428	ENSPANG00000025310	NOL6	100	86.000	Papio_anubis
ENSMUSG00000028430	Nol6	97	52.406	ENSPKIG00000011418	nol6	98	52.406	Paramormyrops_kingsleyae
ENSMUSG00000028430	Nol6	97	61.354	ENSPSIG00000014763	NOL6	99	60.501	Pelodiscus_sinensis
ENSMUSG00000028430	Nol6	95	51.139	ENSPMGG00000015119	nol6	99	51.139	Periophthalmus_magnuspinnatus
ENSMUSG00000028430	Nol6	100	89.497	ENSPEMG00000011998	Nol6	100	89.497	Peromyscus_maniculatus_bairdii
ENSMUSG00000028430	Nol6	92	77.011	ENSPCIG00000029061	NOL6	99	77.011	Phascolarctos_cinereus
ENSMUSG00000028430	Nol6	97	53.167	ENSPFOG00000003825	nol6	98	53.167	Poecilia_formosa
ENSMUSG00000028430	Nol6	97	53.345	ENSPLAG00000001410	nol6	98	53.345	Poecilia_latipinna
ENSMUSG00000028430	Nol6	97	53.078	ENSPMEG00000021561	nol6	98	53.078	Poecilia_mexicana
ENSMUSG00000028430	Nol6	98	52.452	ENSPREG00000004807	nol6	99	52.452	Poecilia_reticulata
ENSMUSG00000028430	Nol6	99	84.334	ENSPPYG00000019133	NOL6	100	84.334	Pongo_abelii
ENSMUSG00000028430	Nol6	99	85.864	ENSPCOG00000019262	NOL6	100	90.000	Propithecus_coquereli
ENSMUSG00000028430	Nol6	99	80.803	ENSPVAG00000011487	NOL6	100	80.803	Pteropus_vampyrus
ENSMUSG00000028430	Nol6	98	52.277	ENSPNYG00000020726	nol6	99	52.277	Pundamilia_nyererei
ENSMUSG00000028430	Nol6	97	50.847	ENSPNAG00000028102	nol6	99	50.220	Pygocentrus_nattereri
ENSMUSG00000028430	Nol6	99	93.351	ENSRNOG00000010409	Nol6	100	93.351	Rattus_norvegicus
ENSMUSG00000028430	Nol6	99	81.677	ENSRBIG00000016646	NOL6	100	82.416	Rhinopithecus_bieti
ENSMUSG00000028430	Nol6	99	85.253	ENSRROG00000039046	NOL6	100	85.253	Rhinopithecus_roxellana
ENSMUSG00000028430	Nol6	99	84.582	ENSSBOG00000029525	NOL6	100	84.765	Saimiri_boliviensis_boliviensis
ENSMUSG00000028430	Nol6	99	69.391	ENSSHAG00000004050	NOL6	100	69.391	Sarcophilus_harrisii
ENSMUSG00000028430	Nol6	96	52.650	ENSSFOG00015016052	nol6	99	51.515	Scleropages_formosus
ENSMUSG00000028430	Nol6	96	53.190	ENSSMAG00000008757	nol6	99	52.498	Scophthalmus_maximus
ENSMUSG00000028430	Nol6	98	52.140	ENSSDUG00000016772	nol6	99	52.227	Seriola_dumerili
ENSMUSG00000028430	Nol6	98	52.140	ENSSLDG00000017046	nol6	99	52.227	Seriola_lalandi_dorsalis
ENSMUSG00000028430	Nol6	87	82.123	ENSSARG00000010381	NOL6	88	82.123	Sorex_araneus
ENSMUSG00000028430	Nol6	98	60.935	ENSSPUG00000008506	NOL6	99	60.935	Sphenodon_punctatus
ENSMUSG00000028430	Nol6	98	52.687	ENSSPAG00000005542	nol6	99	52.687	Stegastes_partitus
ENSMUSG00000028430	Nol6	99	84.468	ENSSSCG00000010990	NOL6	100	84.468	Sus_scrofa
ENSMUSG00000028430	Nol6	95	61.335	ENSTGUG00000001674	NOL6	100	61.197	Taeniopygia_guttata
ENSMUSG00000028430	Nol6	97	53.441	ENSTRUG00000005694	nol6	98	53.441	Takifugu_rubripes
ENSMUSG00000028430	Nol6	97	53.025	ENSTNIG00000003826	nol6	99	53.025	Tetraodon_nigroviridis
ENSMUSG00000028430	Nol6	83	81.875	ENSTBEG00000003239	NOL6	85	81.875	Tupaia_belangeri
ENSMUSG00000028430	Nol6	92	86.192	ENSTTRG00000010584	NOL6	93	86.192	Tursiops_truncatus
ENSMUSG00000028430	Nol6	99	84.031	ENSUAMG00000025594	NOL6	100	84.206	Ursus_americanus
ENSMUSG00000028430	Nol6	99	83.857	ENSUMAG00000006051	NOL6	100	84.031	Ursus_maritimus
ENSMUSG00000028430	Nol6	97	83.688	ENSVVUG00000021087	NOL6	99	82.583	Vulpes_vulpes
ENSMUSG00000028430	Nol6	99	54.075	ENSXETG00000002153	nol6	99	54.075	Xenopus_tropicalis
ENSMUSG00000028430	Nol6	98	52.890	ENSXMAG00000019408	nol6	99	52.890	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000794	condensed nuclear chromosome	11895476.	IDA	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	11895476.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0006409	tRNA export from nucleus	21873635.	IBA	Process
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0032545	CURI complex	21873635.	IBA	Component
GO:0034456	UTP-C complex	21873635.	IBA	Component