EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028433 (Gene tree)
Gene ID: 68926
Gene Symbol: Ubap2
Alias: 1190005K07Rik
Full Name: ubiquitin-associated protein 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 80832
Position: chr4: 41194313-41275144
Accession: 1916176
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000143552	-	502	-	-	- (aa)	-	-
ENSMUST00000140662	-	132	-	-	- (aa)	-	-
ENSMUST00000136057	-	418	-	ENSMUSP00000120205	140 (aa)	-	F6WTC8
ENSMUST00000108068	-	4380	XM_006538223	ENSMUSP00000103703	1131 (aa)	XP_006538286	A2AMY5
ENSMUST00000135323	-	696	-	ENSMUSP00000122256	227 (aa)	-	A2AMY7
ENSMUST00000030143	-	4368	XM_006538224	ENSMUSP00000030143	1132 (aa)	XP_006538287	Q91VX2
ENSMUST00000132499	-	687	-	-	- (aa)	-	-
ENSMUST00000134782	-	735	-	ENSMUSP00000121724	245 (aa)	-	F6PYV5

Gene Model

Click here to download ENSMUSG00000028433's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028433's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028433	Ubap2	98	57.554	ENSDARG00000063219	ubap2l	52	40.449	Danio_rerio
ENSMUSG00000028433	Ubap2	65	63.736	ENSDARG00000060065	ubap2b	79	56.250	Danio_rerio
ENSMUSG00000028433	Ubap2	100	79.350	ENSG00000137073	UBAP2	100	89.385	Homo_sapiens
ENSMUSG00000028433	Ubap2	98	53.901	ENSG00000143569	UBAP2L	98	50.671	Homo_sapiens
ENSMUSG00000028433	Ubap2	94	53.731	ENSMUSG00000042520	Ubap2l	98	67.290	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component