EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028465 (Gene tree)
Gene ID: 21894
Gene Symbol: Tln1
Alias: -
Full Name: talin 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 31173
Position: chr4: 43531519-43562691
Accession: 1099832
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000130670	-	1376	-	-	- (aa)	-	-
ENSMUST00000126078	-	283	-	-	- (aa)	-	-
ENSMUST00000134623	-	364	-	ENSMUSP00000119956	122 (aa)	-	F6S1V7
ENSMUST00000125509	-	836	-	ENSMUSP00000115681	279 (aa)	-	F6SX70
ENSMUST00000123985	-	937	-	-	- (aa)	-	-
ENSMUST00000130353	-	836	-	ENSMUSP00000119441	241 (aa)	-	A2AIM2
ENSMUST00000127262	-	274	-	-	- (aa)	-	-
ENSMUST00000030187	-	8393	XM_006537768	ENSMUSP00000030187	2541 (aa)	XP_006537831	P26039

Gene Model

Click here to download ENSMUSG00000028465's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04015	Rap1 signaling pathway	KEGG
mmu04510	Focal adhesion	KEGG
mmu04611	Platelet activation	KEGG
mmu05166	Human T-cell leukemia virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028465's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028465	Tln1	99	100.000	ENSG00000137076	TLN1	100	98.741	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001726	ruffle	-	IEA	Component
GO:0001786	phosphatidylserine binding	20150896.	IMP	Function
GO:0003779	actin binding	-	IEA	Function
GO:0005178	integrin binding	20150896.	IMP	Function
GO:0005178	integrin binding	-	ISO	Function
GO:0005200	structural constituent of cytoskeleton	-	IEA	Function
GO:0005515	protein binding	15272303.15642262.17218263.20308429.20399778.21134644.21947080.22210111.25465129.27150043.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005925	focal adhesion	11807098.	IDA	Component
GO:0007016	cytoskeletal anchoring at plasma membrane	-	IEA	Process
GO:0007044	cell-substrate junction assembly	12867986.	IMP	Process
GO:0007155	cell adhesion	-	IEA	Process
GO:0007229	integrin-mediated signaling pathway	20150896.	IMP	Process
GO:0016020	membrane	-	IEA	Component
GO:0017166	vinculin binding	-	ISO	Function
GO:0030054	cell junction	-	IEA	Component
GO:0030274	LIM domain binding	-	ISO	Function
GO:0030866	cortical actin cytoskeleton organization	12867986.	IMP	Process
GO:0033622	integrin activation	20150896.	IMP	Process
GO:0035091	phosphatidylinositol binding	20150896.	IMP	Function
GO:0042995	cell projection	-	IEA	Component
GO:0051015	actin filament binding	-	IEA	Function