EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028484 (Gene tree)
Gene ID: 101739
Gene Symbol: Psip1
Alias: Psip2
Full Name: PC4 and SFRS1 interacting protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 30780
Position: chr4: 83455680-83486459
Accession: 2142116
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000030207	-	3251	-	ENSMUSP00000030207	528 (aa)	-	Q99JF8
ENSMUST00000130626	-	662	-	ENSMUSP00000121950	90 (aa)	-	F6RB63
ENSMUST00000107214	-	1973	XM_006537544	ENSMUSP00000102832	327 (aa)	XP_006537607	A2BI12
ENSMUST00000107215	-	1898	XM_006537542	ENSMUSP00000102833	331 (aa)	-	Q99JF8
ENSMUST00000152382	-	561	-	-	- (aa)	-	-
ENSMUST00000144349	-	1003	-	-	- (aa)	-	-
ENSMUST00000126706	-	463	-	ENSMUSP00000120799	65 (aa)	-	F6W677

Gene Model

Click here to download ENSMUSG00000028484's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028484's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028484	Psip1	100	100.000	ENSG00000164985	PSIP1	100	92.492	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000395	mRNA 5'-splice site recognition	-	ISO	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005720	nuclear heterochromatin	-	ISO	Component
GO:0006979	response to oxidative stress	11027629.	IDA	Process
GO:0009408	response to heat	11027629.	IDA	Process
GO:0033613	activating transcription factor binding	-	ISO	Function
GO:0034399	nuclear periphery	-	ISO	Component
GO:0035327	transcriptionally active chromatin	-	ISO	Component
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0097100	supercoiled DNA binding	-	ISO	Function