EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028580 (Gene tree)
Gene ID
80912
Gene Symbol
Pum1
Alias
Pumm
Full Name
pumilio RNA-binding family member 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
118244 bases
Position
chr4:130663321-130781564
Accession
1931749
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000101612PUFPF00806.194.1e-7018
ENSMUSP00000101612PUFPF00806.194.1e-7028
ENSMUSP00000101612PUFPF00806.194.1e-7038
ENSMUSP00000101612PUFPF00806.194.1e-7048
ENSMUSP00000101612PUFPF00806.194.1e-7058
ENSMUSP00000101612PUFPF00806.194.1e-7068
ENSMUSP00000101612PUFPF00806.194.1e-7078
ENSMUSP00000101612PUFPF00806.194.1e-7088
ENSMUSP00000095476PUFPF00806.193.1e-6918
ENSMUSP00000095476PUFPF00806.193.1e-6928
ENSMUSP00000095476PUFPF00806.193.1e-6938
ENSMUSP00000095476PUFPF00806.193.1e-6948
ENSMUSP00000095476PUFPF00806.193.1e-6958
ENSMUSP00000095476PUFPF00806.193.1e-6968
ENSMUSP00000095476PUFPF00806.193.1e-6978
ENSMUSP00000095476PUFPF00806.193.1e-6988
ENSMUSP00000101613PUFPF00806.193.6e-6918
ENSMUSP00000101613PUFPF00806.193.6e-6928
ENSMUSP00000101613PUFPF00806.193.6e-6938
ENSMUSP00000101613PUFPF00806.193.6e-6948
ENSMUSP00000101613PUFPF00806.193.6e-6958
ENSMUSP00000101613PUFPF00806.193.6e-6968
ENSMUSP00000101613PUFPF00806.193.6e-6978
ENSMUSP00000101613PUFPF00806.193.6e-6988
ENSMUSP00000095474PUFPF00806.197.6e-6918
ENSMUSP00000095474PUFPF00806.197.6e-6928
ENSMUSP00000095474PUFPF00806.197.6e-6938
ENSMUSP00000095474PUFPF00806.197.6e-6948
ENSMUSP00000095474PUFPF00806.197.6e-6958
ENSMUSP00000095474PUFPF00806.197.6e-6968
ENSMUSP00000095474PUFPF00806.197.6e-6978
ENSMUSP00000095474PUFPF00806.197.6e-6988
ENSMUSP00000030315PUFPF00806.197.6e-6918
ENSMUSP00000030315PUFPF00806.197.6e-6928
ENSMUSP00000030315PUFPF00806.197.6e-6938
ENSMUSP00000030315PUFPF00806.197.6e-6948
ENSMUSP00000030315PUFPF00806.197.6e-6958
ENSMUSP00000030315PUFPF00806.197.6e-6968
ENSMUSP00000030315PUFPF00806.197.6e-6978
ENSMUSP00000030315PUFPF00806.197.6e-6988
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000097862-3991XM_017320461ENSMUSP000000954741188 (aa)XP_017175950Q80U78
ENSMUST00000097864-4017XM_006539294ENSMUSP000000954761186 (aa)XP_006539357Q80U78
ENSMUST00000030315-5389XM_006539291ENSMUSP000000303151189 (aa)XP_006539354Q80U78
ENSMUST00000122847-1273--- (aa)--
ENSMUST00000105991-4614XM_006539308ENSMUSP00000101612944 (aa)XP_006539371E9Q6M7
ENSMUST00000143277-693-ENSMUSP00000114629218 (aa)-A8WHM8
ENSMUST00000105992-5058XM_006539299ENSMUSP000001016131092 (aa)XP_006539362Q3TTW5
Gene Model
Click here to download ENSMUSG00000028580's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028580's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000028580Pum18687.294ENSMUSG00000020594Pum210088.835
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028580Pum110099.306ENSG00000134644PUM1100100.000Homo_sapiens
ENSMUSG00000028580Pum19091.768ENSAPOG00000021632pum110091.283Acanthochromis_polyacanthus
ENSMUSG00000028580Pum110099.306ENSAMEG00000017656PUM19798.739Ailuropoda_melanoleuca
ENSMUSG00000028580Pum110080.817ENSACIG00000021013pum110075.497Amphilophus_citrinellus
ENSMUSG00000028580Pum19091.768ENSAOCG00000003944pum110091.283Amphiprion_ocellaris
ENSMUSG00000028580Pum19091.768ENSAPEG00000014550pum110091.283Amphiprion_percula
ENSMUSG00000028580Pum19091.768ENSATEG00000016004pum110091.283Anabas_testudineus
ENSMUSG00000028580Pum110097.015ENSAPLG00000009351PUM110096.972Anas_platyrhynchos
ENSMUSG00000028580Pum110095.268ENSACAG00000000682PUM19895.118Anolis_carolinensis
ENSMUSG00000028580Pum110099.306ENSANAG00000027865PUM110099.306Aotus_nancymaae
ENSMUSG00000028580Pum19076.367ENSACLG00000019354pum110077.798Astatotilapia_calliptera
ENSMUSG00000028580Pum110083.747ENSAMXG00000020607pum19678.344Astyanax_mexicanus
ENSMUSG00000028580Pum110099.306ENSBTAG00000018979PUM110099.306Bos_taurus
ENSMUSG00000028580Pum110099.306ENSCJAG00000006035PUM110099.515Callithrix_jacchus
ENSMUSG00000028580Pum110099.306ENSCAFG00000011205PUM110096.552Canis_familiaris
ENSMUSG00000028580Pum19296.724ENSCAFG00020024616PUM19899.272Canis_lupus_dingo
ENSMUSG00000028580Pum110099.306ENSCHIG00000012952PUM110099.272Capra_hircus
ENSMUSG00000028580Pum110098.654ENSTSYG00000008868PUM110098.654Carlito_syrichta
ENSMUSG00000028580Pum110098.991ENSCPOG00000031613PUM110098.991Cavia_porcellus
ENSMUSG00000028580Pum110099.306ENSCATG00000017991PUM110099.517Cercocebus_atys
ENSMUSG00000028580Pum110099.075ENSCLAG00000007662PUM1100100.000Chinchilla_lanigera
ENSMUSG00000028580Pum110099.306ENSCSAG00000001028PUM110098.083Chlorocebus_sabaeus
ENSMUSG00000028580Pum19299.306ENSCHOG00000010245PUM19396.115Choloepus_hoffmanni
ENSMUSG00000028580Pum110096.978ENSCPBG00000009288PUM110098.058Chrysemys_picta_bellii
ENSMUSG00000028580Pum110099.306ENSCANG00000042606PUM110099.515Colobus_angolensis_palliatus
ENSMUSG00000028580Pum1100100.000ENSCGRG00001024949Pum1100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000028580Pum1100100.000ENSCGRG00000014197Pum1100100.000Cricetulus_griseus_crigri
ENSMUSG00000028580Pum19075.788ENSCSEG00000015981pum110077.108Cynoglossus_semilaevis
ENSMUSG00000028580Pum110080.322ENSCVAG00000007043pum110074.711Cyprinodon_variegatus
ENSMUSG00000028580Pum110084.367ENSDARG00000099256pum110078.930Danio_rerio
ENSMUSG00000028580Pum110099.306ENSDNOG00000010939PUM110098.402Dasypus_novemcinctus
ENSMUSG00000028580Pum190100.000ENSDORG00000001875Pum1100100.000Dipodomys_ordii
ENSMUSG00000028580Pum185100.000ENSETEG00000004355PUM18793.066Echinops_telfairi
ENSMUSG00000028580Pum110099.306ENSEASG00005010813PUM110098.569Equus_asinus_asinus
ENSMUSG00000028580Pum110098.611ENSECAG00000021369PUM110098.486Equus_caballus
ENSMUSG00000028580Pum18099.306ENSEEUG00000003871PUM17499.661Erinaceus_europaeus
ENSMUSG00000028580Pum110082.987ENSELUG00000002409pum110083.127Esox_lucius
ENSMUSG00000028580Pum110099.306ENSFCAG00000010374PUM110099.583Felis_catus
ENSMUSG00000028580Pum110095.921ENSFALG00000001214PUM19794.640Ficedula_albicollis
ENSMUSG00000028580Pum110098.823ENSFDAG00000011319PUM110098.823Fukomys_damarensis
ENSMUSG00000028580Pum17087.643ENSGMOG00000010491pum110074.175Gadus_morhua
ENSMUSG00000028580Pum110097.140ENSGALG00000042598PUM110097.140Gallus_gallus
ENSMUSG00000028580Pum110080.446ENSGAFG00000015617pum110090.557Gambusia_affinis
ENSMUSG00000028580Pum110080.542ENSGACG00000005717pum110075.288Gasterosteus_aculeatus
ENSMUSG00000028580Pum110096.720ENSGAGG00000001290PUM110096.720Gopherus_agassizii
ENSMUSG00000028580Pum110099.306ENSGGOG00000011983PUM110099.515Gorilla_gorilla
ENSMUSG00000028580Pum110080.569ENSHBUG00000018718pum110075.289Haplochromis_burtoni
ENSMUSG00000028580Pum110098.654ENSHGLG00000013819Pum110098.654Heterocephalus_glaber_female
ENSMUSG00000028580Pum110098.654ENSHGLG00100008621Pum110098.654Heterocephalus_glaber_male
ENSMUSG00000028580Pum19074.630ENSHCOG00000005149pum110074.468Hippocampus_comes
ENSMUSG00000028580Pum110082.143ENSIPUG00000020421pum110077.307Ictalurus_punctatus
ENSMUSG00000028580Pum110099.306ENSSTOG00000010757PUM110099.306Ictidomys_tridecemlineatus
ENSMUSG00000028580Pum110099.306ENSJJAG00000000530Pum110099.306Jaculus_jaculus
ENSMUSG00000028580Pum110079.950ENSKMAG00000003481pum110074.876Kryptolebias_marmoratus
ENSMUSG00000028580Pum110079.926ENSLBEG00000002527pum110075.476Labrus_bergylta
ENSMUSG00000028580Pum110088.104ENSLACG00000017188PUM19986.261Latimeria_chalumnae
ENSMUSG00000028580Pum110091.056ENSLOCG00000005210pum19987.896Lepisosteus_oculatus
ENSMUSG00000028580Pum110098.150ENSLAFG00000003178PUM110098.150Loxodonta_africana
ENSMUSG00000028580Pum110099.306ENSMFAG00000010291PUM110099.517Macaca_fascicularis
ENSMUSG00000028580Pum110099.306ENSMMUG00000013520PUM110099.515Macaca_mulatta
ENSMUSG00000028580Pum110099.306ENSMNEG00000034639PUM110099.515Macaca_nemestrina
ENSMUSG00000028580Pum110099.306ENSMLEG00000038743PUM110099.515Mandrillus_leucophaeus
ENSMUSG00000028580Pum110080.569ENSMAMG00000011606pum110075.372Mastacembelus_armatus
ENSMUSG00000028580Pum110080.569ENSMZEG00005005834pum110075.289Maylandia_zebra
ENSMUSG00000028580Pum110096.888ENSMGAG00000000724PUM110096.888Meleagris_gallopavo
ENSMUSG00000028580Pum1100100.000ENSMAUG00000022090Pum1100100.000Mesocricetus_auratus
ENSMUSG00000028580Pum110098.823ENSMICG00000007713-10099.272Microcebus_murinus
ENSMUSG00000028580Pum19997.183ENSMICG00000012213-10095.874Microcebus_murinus
ENSMUSG00000028580Pum110099.327ENSMOCG00000015463Pum110099.327Microtus_ochrogaster
ENSMUSG00000028580Pum19088.453ENSMMOG00000019817pum110091.041Mola_mola
ENSMUSG00000028580Pum110097.143ENSMODG00000017067PUM110097.143Monodelphis_domestica
ENSMUSG00000028580Pum19088.684ENSMALG00000016399pum110091.283Monopterus_albus
ENSMUSG00000028580Pum110099.788MGP_CAROLIEiJ_G0026549Pum110099.788Mus_caroli
ENSMUSG00000028580Pum1100100.000MGP_PahariEiJ_G0028881Pum1100100.000Mus_pahari
ENSMUSG00000028580Pum1100100.000MGP_SPRETEiJ_G0027529Pum1100100.000Mus_spretus
ENSMUSG00000028580Pum110099.306ENSMPUG00000015454PUM110098.485Mustela_putorius_furo
ENSMUSG00000028580Pum110099.306ENSMLUG00000006490PUM110098.484Myotis_lucifugus
ENSMUSG00000028580Pum110098.991ENSNGAG00000002378Pum110099.001Nannospalax_galili
ENSMUSG00000028580Pum110078.033ENSNBRG00000010689pum110082.797Neolamprologus_brichardi
ENSMUSG00000028580Pum110098.611ENSNLEG00000001151PUM110098.611Nomascus_leucogenys
ENSMUSG00000028580Pum18496.622ENSMEUG00000000976-8296.622Notamacropus_eugenii
ENSMUSG00000028580Pum184100.000ENSOPRG00000001776PUM173100.000Ochotona_princeps
ENSMUSG00000028580Pum110098.906ENSODEG00000003465PUM110098.906Octodon_degus
ENSMUSG00000028580Pum110081.127ENSONIG00000002290pum110075.620Oreochromis_niloticus
ENSMUSG00000028580Pum18177.254ENSOANG00000004902-10077.254Ornithorhynchus_anatinus
ENSMUSG00000028580Pum110099.306ENSOCUG00000008641PUM19998.568Oryctolagus_cuniculus
ENSMUSG00000028580Pum110081.436ENSORLG00000011482pum110075.618Oryzias_latipes
ENSMUSG00000028580Pum110081.559ENSORLG00020019461pum110075.618Oryzias_latipes_hni
ENSMUSG00000028580Pum110081.559ENSORLG00015011375pum110075.700Oryzias_latipes_hsok
ENSMUSG00000028580Pum19092.978ENSOMEG00000009312pum110090.557Oryzias_melastigma
ENSMUSG00000028580Pum110098.611ENSOGAG00000011063PUM110095.970Otolemur_garnettii
ENSMUSG00000028580Pum110099.306ENSOARG00000001899PUM110099.272Ovis_aries
ENSMUSG00000028580Pum110099.306ENSPPAG00000044003PUM110099.515Pan_paniscus
ENSMUSG00000028580Pum110099.306ENSPPRG00000001370PUM110099.306Panthera_pardus
ENSMUSG00000028580Pum110099.306ENSPTIG00000010798PUM110099.306Panthera_tigris_altaica
ENSMUSG00000028580Pum110099.306ENSPTRG00000000453PUM110099.515Pan_troglodytes
ENSMUSG00000028580Pum110099.306ENSPANG00000016338PUM110099.517Papio_anubis
ENSMUSG00000028580Pum110082.252ENSPKIG00000010578pum110077.888Paramormyrops_kingsleyae
ENSMUSG00000028580Pum110097.222ENSPSIG00000014118PUM110097.222Pelodiscus_sinensis
ENSMUSG00000028580Pum110076.403ENSPMGG00000005836pum110081.250Periophthalmus_magnuspinnatus
ENSMUSG00000028580Pum1100100.000ENSPEMG00000010009Pum1100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000028580Pum110097.143ENSPCIG00000014151PUM110097.585Phascolarctos_cinereus
ENSMUSG00000028580Pum19383.251ENSPFOG00000007289pum19981.498Poecilia_formosa
ENSMUSG00000028580Pum110082.346ENSPLAG00000007256pum110077.513Poecilia_latipinna
ENSMUSG00000028580Pum18582.469ENSPMEG00000019543pum19977.829Poecilia_mexicana
ENSMUSG00000028580Pum110080.446ENSPREG00000005195pum110080.316Poecilia_reticulata
ENSMUSG00000028580Pum110099.306ENSPPYG00000001621PUM110097.030Pongo_abelii
ENSMUSG00000028580Pum18498.765ENSPCAG00000001979PUM17498.765Procavia_capensis
ENSMUSG00000028580Pum110098.823ENSPCOG00000004398PUM110099.272Propithecus_coquereli
ENSMUSG00000028580Pum110099.306ENSPVAG00000005207PUM19796.633Pteropus_vampyrus
ENSMUSG00000028580Pum110080.569ENSPNYG00000009518pum110081.840Pundamilia_nyererei
ENSMUSG00000028580Pum110083.995ENSPNAG00000026728pum110079.645Pygocentrus_nattereri
ENSMUSG00000028580Pum1100100.000ENSRNOG00000011709Pum110099.663Rattus_norvegicus
ENSMUSG00000028580Pum110099.306ENSRBIG00000042521PUM110099.517Rhinopithecus_bieti
ENSMUSG00000028580Pum110099.306ENSRROG00000020156PUM110099.515Rhinopithecus_roxellana
ENSMUSG00000028580Pum110099.306ENSSBOG00000032037PUM110099.515Saimiri_boliviensis_boliviensis
ENSMUSG00000028580Pum110096.975ENSSHAG00000010918PUM110096.975Sarcophilus_harrisii
ENSMUSG00000028580Pum110080.569ENSSMAG00000010918pum110091.283Scophthalmus_maximus
ENSMUSG00000028580Pum110080.693ENSSDUG00000009021pum110076.198Seriola_dumerili
ENSMUSG00000028580Pum110080.693ENSSLDG00000009667pum110078.135Seriola_lalandi_dorsalis
ENSMUSG00000028580Pum19999.306ENSSARG00000003055PUM19199.558Sorex_araneus
ENSMUSG00000028580Pum110096.887ENSSPUG00000006267PUM110096.465Sphenodon_punctatus
ENSMUSG00000028580Pum19091.768ENSSPAG00000016636pum110091.283Stegastes_partitus
ENSMUSG00000028580Pum110099.306ENSSSCG00000003591PUM110099.583Sus_scrofa
ENSMUSG00000028580Pum110080.446ENSTRUG00000013121pum110082.426Takifugu_rubripes
ENSMUSG00000028580Pum110080.222ENSTNIG00000016983pum19976.183Tetraodon_nigroviridis
ENSMUSG00000028580Pum18796.341ENSTBEG00000013810PUM18996.341Tupaia_belangeri
ENSMUSG00000028580Pum19298.723ENSTTRG00000007436PUM19098.723Tursiops_truncatus
ENSMUSG00000028580Pum19998.521ENSUAMG00000018262-10098.521Ursus_americanus
ENSMUSG00000028580Pum19599.275ENSUMAG00000009211PUM110099.275Ursus_maritimus
ENSMUSG00000028580Pum110098.611ENSVPAG00000005902PUM19299.322Vicugna_pacos
ENSMUSG00000028580Pum110099.306ENSVVUG00000014631PUM110099.275Vulpes_vulpes
ENSMUSG00000028580Pum110087.950ENSXETG00000012904pum19986.902Xenopus_tropicalis
ENSMUSG00000028580Pum110080.446ENSXMAG00000002945pum110076.684Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body-ISOComponent
GO:0003723RNA binding-ISOFunction
GO:0003730mRNA 3'-UTR binding22342750.25768905.IDAFunction
GO:0003730mRNA 3'-UTR binding-ISOFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm22342750.IDAComponent
GO:0005829cytosol-ISOComponent
GO:0006417regulation of translation-IEAProcess
GO:0007283spermatogenesis22342750.IMPProcess
GO:0008344adult locomotory behavior25768905.IMPProcess
GO:0010494cytoplasmic stress granule-ISOComponent
GO:0010608posttranscriptional regulation of gene expression25100735.IMPProcess
GO:0010608posttranscriptional regulation of gene expression25100735.ISOProcess
GO:0016441posttranscriptional gene silencing22342750.24412312.IMPProcess
GO:0016607nuclear speck-ISOComponent
GO:0030154cell differentiation-IEAProcess
GO:0035196production of miRNAs involved in gene silencing by miRNA-ISOProcess
GO:0035198miRNA binding-ISOFunction
GO:0043488regulation of mRNA stability-ISOProcess
GO:0048863stem cell differentiation24412312.IMPProcess
GO:0051726regulation of cell cycle-ISOProcess
GO:0051983regulation of chromosome segregation-ISOProcess
GO:0061157mRNA destabilization25768905.IDAProcess
GO:1900246positive regulation of RIG-I signaling pathway-ISOProcess
GO:2000637positive regulation of gene silencing by miRNA-ISOProcess

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