EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028614 (Gene tree)
Gene ID: 72787
Gene Symbol: Ndc1
Alias: 2810475A17Rik|Tmem48|sks
Full Name: NDC1 transmembrane nucleoporin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 48563
Position: chr4: 107367784-107416346
Accession: 1920037
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000030357	-	2354	-	ENSMUSP00000136239	42 (aa)	-	J3QMD9
ENSMUST00000149366	-	4320	-	ENSMUSP00000137180	541 (aa)	-	J3QPB5
ENSMUST00000125342	-	598	-	ENSMUSP00000136850	42 (aa)	-	J3QMD9
ENSMUST00000150800	-	422	-	-	- (aa)	-	-
ENSMUST00000139560	-	4584	XM_006503423	ENSMUSP00000120365	673 (aa)	XP_006503486	Q8VCB1
ENSMUST00000132950	-	804	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028614's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028614's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005643	nuclear pore	24045954.	IDA	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005737	cytoplasm	24045954.	IDA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006999	nuclear pore organization	21873635.	IBA	Process
GO:0007129	synapsis	24045954.	IMP	Process
GO:0007283	spermatogenesis	24045954.	IMP	Process
GO:0015031	protein transport	-	IEA	Process
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0017056	structural constituent of nuclear pore	21873635.	IBA	Function
GO:0017056	structural constituent of nuclear pore	-	ISO	Function
GO:0031081	nuclear pore distribution	-	ISO	Process
GO:0031965	nuclear membrane	-	ISO	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0051292	nuclear pore complex assembly	-	ISO	Process
GO:0070762	nuclear pore transmembrane ring	21873635.	IBA	Component