EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028649 (Gene tree)
Gene ID: 11426
Gene Symbol: Macf1
Alias: Acf7|Aclp7|trabeculin alpha
Full Name: microtubule-actin crosslinking factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 334728
Position: chr4: 123349633-123684360
Accession: 108559
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000106213	-	18957	-	ENSMUSP00000101819	5895 (aa)	-	B1ARU1
ENSMUST00000134458	-	14463	-	ENSMUSP00000119885	4429 (aa)	-	F6Q750
ENSMUST00000082108	-	17331	XM_011240415	ENSMUSP00000080755	5328 (aa)	XP_011238717	A0A0A0MQA6
ENSMUST00000151346	-	17175	XM_011240416	ENSMUSP00000114568	5333 (aa)	XP_011238718	F7ACR9
ENSMUST00000147030	-	5706	-	ENSMUSP00000123246	1837 (aa)	-	F6XCT0
ENSMUST00000097897	-	23495	XM_011240411	ENSMUSP00000095507	7355 (aa)	XP_011238713	E9PVY8
ENSMUST00000140596	-	1109	-	ENSMUSP00000117433	369 (aa)	-	A0A0A0MQH5
ENSMUST00000146000	-	1378	-	-	- (aa)	-	-
ENSMUST00000125447	-	5597	-	ENSMUSP00000153121	1358 (aa)	-	A0A286YD76
ENSMUST00000084301	-	23398	-	ENSMUSP00000081324	7351 (aa)	-	E9QA63
ENSMUST00000123765	-	2613	-	ENSMUSP00000119600	452 (aa)	-	F6RCJ3
ENSMUST00000147228	-	6281	-	ENSMUSP00000115847	2030 (aa)	-	F6SHS0
ENSMUST00000106220	-	17608	XM_011240414	ENSMUSP00000101827	5478 (aa)	XP_011238716	E9QNP1
ENSMUST00000154824	-	2808	-	ENSMUSP00000117188	544 (aa)	-	F6YKN8
ENSMUST00000106224	-	23402	-	ENSMUSP00000101831	7353 (aa)	-	B1ARU4
ENSMUST00000149022	-	2222	-	ENSMUSP00000116085	349 (aa)	-	F6RL59

Gene Model

Click here to download ENSMUSG00000028649's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028649's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028649	Macf1	100	96.875	ENSG00000127603	MACF1	99	97.601	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001707	mesoderm formation	16815997.	IMP	Process
GO:0003779	actin binding	14636561.	IDA	Function
GO:0005198	structural molecule activity	21873635.	IBA	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005515	protein binding	16815997.18854161.21689717.	IPI	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	21295697.	IDA	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	21873635.	IBA	Component
GO:0005874	microtubule	18854161.21295697.	IDA	Component
GO:0005882	intermediate filament	21873635.	IBA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005938	cell cortex	-	ISO	Component
GO:0006620	posttranslational protein targeting to endoplasmic reticulum membrane	16815997.	IMP	Process
GO:0007010	cytoskeleton organization	-	IEA	Process
GO:0007163	establishment or maintenance of cell polarity	14636561.	IMP	Process
GO:0008017	microtubule binding	14636561.	IDA	Function
GO:0008092	cytoskeletal protein binding	-	IEA	Function
GO:0008104	protein localization	-	ISO	Process
GO:0010632	regulation of epithelial cell migration	18854161.21295697.	IMP	Process
GO:0014069	postsynaptic density	17114649.	IDA	Component
GO:0015629	actin cytoskeleton	21873635.	IBA	Component
GO:0015629	actin cytoskeleton	14636561.	IDA	Component
GO:0015630	microtubule cytoskeleton	14636561.	IDA	Component
GO:0016020	membrane	21873635.	IBA	Component
GO:0016020	membrane	-	ISO	Component
GO:0016055	Wnt signaling pathway	16815997.	IGI	Process
GO:0016055	Wnt signaling pathway	16815997.	IMP	Process
GO:0016887	ATPase activity	18854161.	IDA	Function
GO:0030177	positive regulation of Wnt signaling pathway	16815997.	IMP	Process
GO:0030177	positive regulation of Wnt signaling pathway	-	ISO	Process
GO:0032886	regulation of microtubule-based process	21873635.	IBA	Process
GO:0032886	regulation of microtubule-based process	21295697.	IMP	Process
GO:0042060	wound healing	21873635.	IBA	Process
GO:0042060	wound healing	18854161.21295697.	IMP	Process
GO:0042995	cell projection	-	IEA	Component
GO:0045104	intermediate filament cytoskeleton organization	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051893	regulation of focal adhesion assembly	21873635.	IBA	Process
GO:0051893	regulation of focal adhesion assembly	18854161.	IMP	Process