EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028676 (Gene tree)
Gene ID
14105
Gene Symbol
Srsf10
Alias
FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR1|TASR2
Full Name
serine/arginine-rich splicing factor 10
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
14162 bases
Position
chr4:135855747-135869908
Accession
1333805
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000099603RRM_1PF00076.221.9e-1911
ENSMUSP00000114564RRM_1PF00076.221.9e-1911
ENSMUSP00000095455RRM_1PF00076.223.7e-1911
ENSMUSP00000101479RRM_1PF00076.223.7e-1911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000149878-394--- (aa)--
ENSMUST00000129718-717--- (aa)--
ENSMUST00000102544-2225-ENSMUSP00000099603182 (aa)-Q3TFP0
ENSMUST00000105853-3058-ENSMUSP00000101479262 (aa)-Q9R0U0
ENSMUST00000097844-3055-ENSMUSP00000095455261 (aa)-Q9R0U0
ENSMUST00000030438-2493--- (aa)--
ENSMUST00000154447-677--- (aa)--
ENSMUST00000129198-522--- (aa)--
ENSMUST00000126641-3754XM_011250188ENSMUSP00000114564183 (aa)XP_011248490Q9R0U0
ENSMUST00000142002-423--- (aa)--
Gene Model
Click here to download ENSMUSG00000028676's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028676's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000028676Srsf105232.292ENSMUSG00000037361Sf3b68432.292
ENSMUSG00000028676Srsf105236.170ENSMUSG00000071172Srsf37335.789
ENSMUSG00000028676Srsf105032.500ENSMUSG00000090919Pabpc4l5231.461
ENSMUSG00000028676Srsf105936.585ENSMUSG00000022283Pabpc16536.585
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028676Srsf10100100.000ENSG00000188529SRSF10100100.000Homo_sapiens
ENSMUSG00000028676Srsf1010097.348ENSAMEG00000009869SRSF1010097.348Ailuropoda_melanoleuca
ENSMUSG00000028676Srsf109297.107ENSAPLG00000005446SRSF1010097.107Anas_platyrhynchos
ENSMUSG00000028676Srsf109094.578ENSACAG00000005327SRSF109292.308Anolis_carolinensis
ENSMUSG00000028676Srsf1010086.260ENSANAG00000033337-10086.260Aotus_nancymaae
ENSMUSG00000028676Srsf1010091.221ENSANAG00000029200-10091.221Aotus_nancymaae
ENSMUSG00000028676Srsf108487.500ENSANAG00000033569-8493.878Aotus_nancymaae
ENSMUSG00000028676Srsf105785.437ENSACLG00000022631srsf10b9558.468Astatotilapia_calliptera
ENSMUSG00000028676Srsf109294.083ENSBTAG00000054307-8294.083Bos_taurus
ENSMUSG00000028676Srsf1010099.451ENSBTAG00000008072SRSF1010099.451Bos_taurus
ENSMUSG00000028676Srsf109093.902ENSCJAG00000010608-9194.083Callithrix_jacchus
ENSMUSG00000028676Srsf1010099.618ENSCJAG00000044116SRSF1010099.618Callithrix_jacchus
ENSMUSG00000028676Srsf109087.805ENSCJAG00000002933-9188.166Callithrix_jacchus
ENSMUSG00000028676Srsf108694.904ENSCAFG00000003095-8674.222Canis_familiaris
ENSMUSG00000028676Srsf109497.959ENSCAFG00020020795-9297.959Canis_lupus_dingo
ENSMUSG00000028676Srsf1010091.257ENSCHIG00000000308-10091.279Capra_hircus
ENSMUSG00000028676Srsf10100100.000ENSTSYG00000009439-100100.000Carlito_syrichta
ENSMUSG00000028676Srsf109694.821ENSCAPG00000014746SRSF10100100.000Cavia_aperea
ENSMUSG00000028676Srsf10100100.000ENSCPOG00000034102SRSF10100100.000Cavia_porcellus
ENSMUSG00000028676Srsf10100100.000ENSCCAG00000022497SRSF10100100.000Cebus_capucinus
ENSMUSG00000028676Srsf108481.699ENSCCAG00000033919-7186.429Cebus_capucinus
ENSMUSG00000028676Srsf1010080.769ENSCCAG00000024936-10080.769Cebus_capucinus
ENSMUSG00000028676Srsf10100100.000ENSCATG00000031598SRSF10100100.000Cercocebus_atys
ENSMUSG00000028676Srsf10100100.000ENSCLAG00000015555SRSF10100100.000Chinchilla_lanigera
ENSMUSG00000028676Srsf1080100.000ENSCHOG00000004836-100100.000Choloepus_hoffmanni
ENSMUSG00000028676Srsf108999.387ENSCHOG00000007773-10099.387Choloepus_hoffmanni
ENSMUSG00000028676Srsf1010096.212ENSCPBG00000000469SRSF1010096.212Chrysemys_picta_bellii
ENSMUSG00000028676Srsf1010089.560ENSCANG00000037461-10089.560Colobus_angolensis_palliatus
ENSMUSG00000028676Srsf1010095.038ENSCANG00000041113-10095.038Colobus_angolensis_palliatus
ENSMUSG00000028676Srsf109473.984ENSCANG00000010607-9871.951Colobus_angolensis_palliatus
ENSMUSG00000028676Srsf1089100.000ENSCANG00000042227-93100.000Colobus_angolensis_palliatus
ENSMUSG00000028676Srsf1078100.000ENSCANG00000037293-9597.260Colobus_angolensis_palliatus
ENSMUSG00000028676Srsf10100100.000ENSCGRG00001017946Srsf10100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000028676Srsf109893.359ENSCGRG00000011531Srsf109793.359Cricetulus_griseus_crigri
ENSMUSG00000028676Srsf106183.784ENSCVAG00000019270srsf10b9758.750Cyprinodon_variegatus
ENSMUSG00000028676Srsf106083.636ENSDARG00000086411srsf10b6477.987Danio_rerio
ENSMUSG00000028676Srsf107465.672ENSDNOG00000048051-9665.672Dasypus_novemcinctus
ENSMUSG00000028676Srsf109869.380ENSDNOG00000048916-9869.380Dasypus_novemcinctus
ENSMUSG00000028676Srsf10100100.000ENSDORG00000024574Srsf10100100.000Dipodomys_ordii
ENSMUSG00000028676Srsf1010098.855ENSEASG00005004349SRSF1010098.855Equus_asinus_asinus
ENSMUSG00000028676Srsf1010099.618ENSECAG00000023709SRSF1010099.618Equus_caballus
ENSMUSG00000028676Srsf1010098.479ENSEEUG00000014286SRSF1010098.479Erinaceus_europaeus
ENSMUSG00000028676Srsf105079.121ENSELUG00000017108SRSF106079.121Esox_lucius
ENSMUSG00000028676Srsf1010099.618ENSFCAG00000045556SRSF1010099.618Felis_catus
ENSMUSG00000028676Srsf1010096.947ENSFALG00000000505SRSF1010096.947Ficedula_albicollis
ENSMUSG00000028676Srsf108672.444ENSFDAG00000021316-9172.444Fukomys_damarensis
ENSMUSG00000028676Srsf1010098.092ENSFDAG00000019418SRSF1010098.092Fukomys_damarensis
ENSMUSG00000028676Srsf107686.331ENSFDAG00000005977-9285.816Fukomys_damarensis
ENSMUSG00000028676Srsf1010097.710ENSGALG00000004133SRSF1010097.710Gallus_gallus
ENSMUSG00000028676Srsf106084.404ENSGAFG00000014771srsf10b5879.817Gambusia_affinis
ENSMUSG00000028676Srsf105978.632ENSGACG00000013650SRSF106769.492Gasterosteus_aculeatus
ENSMUSG00000028676Srsf108175.333ENSGACG00000002231srsf10b7963.054Gasterosteus_aculeatus
ENSMUSG00000028676Srsf1010096.212ENSGAGG00000005357SRSF1010096.212Gopherus_agassizii
ENSMUSG00000028676Srsf109373.964ENSGGOG00000042323-9974.405Gorilla_gorilla
ENSMUSG00000028676Srsf109677.291ENSGGOG00000036220-9975.697Gorilla_gorilla
ENSMUSG00000028676Srsf10100100.000ENSGGOG00000000392SRSF10100100.000Gorilla_gorilla
ENSMUSG00000028676Srsf105785.437ENSHBUG00000017264srsf10b9561.373Haplochromis_burtoni
ENSMUSG00000028676Srsf108182.432ENSHGLG00000018327-9674.797Heterocephalus_glaber_female
ENSMUSG00000028676Srsf10100100.000ENSHGLG00000010879-100100.000Heterocephalus_glaber_female
ENSMUSG00000028676Srsf108978.049ENSHGLG00100011571-10072.519Heterocephalus_glaber_male
ENSMUSG00000028676Srsf1010098.099ENSHGLG00100008152-10098.099Heterocephalus_glaber_male
ENSMUSG00000028676Srsf10100100.000ENSSTOG00000000956SRSF10100100.000Ictidomys_tridecemlineatus
ENSMUSG00000028676Srsf1010083.969ENSJJAG00000012744-10079.771Jaculus_jaculus
ENSMUSG00000028676Srsf109089.024ENSJJAG00000021270-10066.412Jaculus_jaculus
ENSMUSG00000028676Srsf1010098.901ENSJJAG00000014552-10098.901Jaculus_jaculus
ENSMUSG00000028676Srsf10100100.000ENSJJAG00000009074Srsf10100100.000Jaculus_jaculus
ENSMUSG00000028676Srsf1010073.770ENSJJAG00000023686-10068.306Jaculus_jaculus
ENSMUSG00000028676Srsf1010058.868ENSLOCG00000005685srsf10b10060.000Lepisosteus_oculatus
ENSMUSG00000028676Srsf1010099.242ENSLAFG00000026905SRSF1010099.242Loxodonta_africana
ENSMUSG00000028676Srsf10100100.000ENSMFAG00000046011SRSF10100100.000Macaca_fascicularis
ENSMUSG00000028676Srsf1010098.473ENSMMUG00000038562-10098.473Macaca_mulatta
ENSMUSG00000028676Srsf10100100.000ENSMMUG00000013784SRSF10100100.000Macaca_mulatta
ENSMUSG00000028676Srsf10100100.000ENSMNEG00000041500SRSF10100100.000Macaca_nemestrina
ENSMUSG00000028676Srsf109884.884ENSMLEG00000033834-9784.884Mandrillus_leucophaeus
ENSMUSG00000028676Srsf10100100.000ENSMLEG00000016013SRSF10100100.000Mandrillus_leucophaeus
ENSMUSG00000028676Srsf105785.437ENSMZEG00005026122srsf10b9558.468Maylandia_zebra
ENSMUSG00000028676Srsf106186.486ENSMZEG00005008188SRSF107470.811Maylandia_zebra
ENSMUSG00000028676Srsf109297.107ENSMGAG00000005772SRSF1010097.107Meleagris_gallopavo
ENSMUSG00000028676Srsf10100100.000ENSMAUG00000019452Srsf10100100.000Mesocricetus_auratus
ENSMUSG00000028676Srsf108593.665ENSMICG00000037744-9088.235Microcebus_murinus
ENSMUSG00000028676Srsf10100100.000ENSMICG00000047638SRSF10100100.000Microcebus_murinus
ENSMUSG00000028676Srsf1096100.000ENSMICG00000017029-99100.000Microcebus_murinus
ENSMUSG00000028676Srsf1010098.473ENSMOCG00000013656Srsf1010098.473Microtus_ochrogaster
ENSMUSG00000028676Srsf109098.182ENSMODG00000013020-9997.059Monodelphis_domestica
ENSMUSG00000028676Srsf105782.524ENSMALG00000017201srsf10b5582.524Monopterus_albus
ENSMUSG00000028676Srsf10100100.000MGP_CAROLIEiJ_G0026645Srsf10100100.000Mus_caroli
ENSMUSG00000028676Srsf1058100.000MGP_PahariEiJ_G0028978-85100.000Mus_pahari
ENSMUSG00000028676Srsf10100100.000MGP_SPRETEiJ_G0027625-100100.000Mus_spretus
ENSMUSG00000028676Srsf1010099.618ENSMPUG00000015845SRSF1010099.618Mustela_putorius_furo
ENSMUSG00000028676Srsf109698.406ENSMLUG00000005293-9998.406Myotis_lucifugus
ENSMUSG00000028676Srsf1010098.864ENSMLUG00000028520SRSF1010098.864Myotis_lucifugus
ENSMUSG00000028676Srsf10100100.000ENSNGAG00000000067Srsf10100100.000Nannospalax_galili
ENSMUSG00000028676Srsf105785.437ENSNBRG00000017230srsf10b9561.373Neolamprologus_brichardi
ENSMUSG00000028676Srsf10100100.000ENSNLEG00000027520SRSF10100100.000Nomascus_leucogenys
ENSMUSG00000028676Srsf1010099.237ENSOPRG00000018613SRSF1010099.237Ochotona_princeps
ENSMUSG00000028676Srsf1010097.710ENSODEG00000020016-10097.710Octodon_degus
ENSMUSG00000028676Srsf109679.429ENSODEG00000002658-8477.011Octodon_degus
ENSMUSG00000028676Srsf1010082.028ENSODEG00000019549-9692.823Octodon_degus
ENSMUSG00000028676Srsf1010072.797ENSODEG00000007110-10069.732Octodon_degus
ENSMUSG00000028676Srsf1010098.092ENSODEG00000018739-10098.092Octodon_degus
ENSMUSG00000028676Srsf1010071.264ENSODEG00000018292-10070.498Octodon_degus
ENSMUSG00000028676Srsf1010089.011ENSOCUG00000021782-10089.011Oryctolagus_cuniculus
ENSMUSG00000028676Srsf1010090.110ENSOCUG00000024013-10090.110Oryctolagus_cuniculus
ENSMUSG00000028676Srsf1010075.410ENSOCUG00000028110-10075.410Oryctolagus_cuniculus
ENSMUSG00000028676Srsf1010084.030ENSOGAG00000015374SRSF1010084.030Otolemur_garnettii
ENSMUSG00000028676Srsf1010097.328ENSOARG00000000073-10097.328Ovis_aries
ENSMUSG00000028676Srsf108095.862ENSOARG00000015607-7895.862Ovis_aries
ENSMUSG00000028676Srsf109098.739ENSOARG00000006984-9298.739Ovis_aries
ENSMUSG00000028676Srsf1010097.710ENSOARG00000002384-9497.710Ovis_aries
ENSMUSG00000028676Srsf10100100.000ENSPPAG00000032557SRSF10100100.000Pan_paniscus
ENSMUSG00000028676Srsf109580.814ENSPPAG00000007053-10080.814Pan_paniscus
ENSMUSG00000028676Srsf1010099.618ENSPPRG00000005806SRSF1010099.618Panthera_pardus
ENSMUSG00000028676Srsf1010094.007ENSPPRG00000001945-10094.007Panthera_pardus
ENSMUSG00000028676Srsf1010099.234ENSPTIG00000014137SRSF1010099.234Panthera_tigris_altaica
ENSMUSG00000028676Srsf108581.529ENSPTIG00000012013-8875.510Panthera_tigris_altaica
ENSMUSG00000028676Srsf109383.432ENSPTRG00000051779-9983.929Pan_troglodytes
ENSMUSG00000028676Srsf10100100.000ENSPTRG00000044753SRSF10100100.000Pan_troglodytes
ENSMUSG00000028676Srsf10100100.000ENSPANG00000021680SRSF10100100.000Papio_anubis
ENSMUSG00000028676Srsf109296.680ENSPSIG00000017849SRSF109996.680Pelodiscus_sinensis
ENSMUSG00000028676Srsf1010099.618ENSPCIG00000014270SRSF106499.618Phascolarctos_cinereus
ENSMUSG00000028676Srsf106382.051ENSPFOG00000004318srsf10b9858.566Poecilia_formosa
ENSMUSG00000028676Srsf106184.685ENSPLAG00000004239srsf10b7868.159Poecilia_latipinna
ENSMUSG00000028676Srsf106184.685ENSPMEG00000000999srsf10b7868.159Poecilia_mexicana
ENSMUSG00000028676Srsf106379.339ENSPREG00000008383srsf10b5879.817Poecilia_reticulata
ENSMUSG00000028676Srsf10100100.000ENSPPYG00000001726SRSF10100100.000Pongo_abelii
ENSMUSG00000028676Srsf1010086.260ENSPCAG00000004059SRSF1010086.260Procavia_capensis
ENSMUSG00000028676Srsf10100100.000ENSPCOG00000022379SRSF10100100.000Propithecus_coquereli
ENSMUSG00000028676Srsf10100100.000ENSPVAG00000013611SRSF10100100.000Pteropus_vampyrus
ENSMUSG00000028676Srsf105785.437ENSPNYG00000007168srsf10b9561.373Pundamilia_nyererei
ENSMUSG00000028676Srsf1090100.000ENSRNOG00000007992Srsf10100100.000Rattus_norvegicus
ENSMUSG00000028676Srsf10100100.000ENSRBIG00000028456SRSF10100100.000Rhinopithecus_bieti
ENSMUSG00000028676Srsf109889.147ENSRBIG00000044085-9789.147Rhinopithecus_bieti
ENSMUSG00000028676Srsf109889.147ENSRROG00000036002-9789.147Rhinopithecus_roxellana
ENSMUSG00000028676Srsf10100100.000ENSRROG00000043248SRSF10100100.000Rhinopithecus_roxellana
ENSMUSG00000028676Srsf108692.405ENSSBOG00000033963-6992.157Saimiri_boliviensis_boliviensis
ENSMUSG00000028676Srsf10100100.000ENSSBOG00000019550SRSF10100100.000Saimiri_boliviensis_boliviensis
ENSMUSG00000028676Srsf106083.636ENSSFOG00015020577srsf10b10058.608Scleropages_formosus
ENSMUSG00000028676Srsf106085.455ENSSMAG00000003165SRSF106574.699Scophthalmus_maximus
ENSMUSG00000028676Srsf105591.000ENSSDUG00000010657SRSF106575.904Seriola_dumerili
ENSMUSG00000028676Srsf105586.408ENSSPAG00000020494SRSF106886.408Stegastes_partitus
ENSMUSG00000028676Srsf10100100.000ENSSSCG00000036293SRSF10100100.000Sus_scrofa
ENSMUSG00000028676Srsf108993.902ENSTGUG00000001178-10093.902Taeniopygia_guttata
ENSMUSG00000028676Srsf1010099.618ENSTTRG00000016150SRSF1010099.618Tursiops_truncatus
ENSMUSG00000028676Srsf109496.825ENSUAMG00000011291-9296.825Ursus_americanus
ENSMUSG00000028676Srsf109090.303ENSUAMG00000026596-9290.000Ursus_americanus
ENSMUSG00000028676Srsf108792.544ENSVVUG00000026904-8592.544Vulpes_vulpes
ENSMUSG00000028676Srsf106183.784ENSXMAG00000029337srsf10b7867.662Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000375RNA splicing, via transesterification reactions9774382.IDAProcess
GO:0000375RNA splicing, via transesterification reactions-ISOProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000395mRNA 5'-splice site recognition21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-ISOFunction
GO:0003723RNA binding9774382.NASFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm11684676.IDAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0006355regulation of transcription, DNA-templated9774382.NASProcess
GO:0006376mRNA splice site selection9774382.ICProcess
GO:0006376mRNA splice site selection-ISOProcess
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0016482cytosolic transport11684676.IDAProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0016607nuclear speck-ISOComponent
GO:0043484regulation of RNA splicing-IEAProcess
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess
GO:0048024regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0048025negative regulation of mRNA splicing, via spliceosome11684676.IDAProcess
GO:0048025negative regulation of mRNA splicing, via spliceosome-ISOProcess
GO:0051082unfolded protein binding11684676.NASFunction

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