EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028691 (Gene tree)
Gene ID: 18477
Gene Symbol: Prdx1
Alias: MSP23|OSF-3|PAG|Paga|Prx I|PrxI|TDX2|Tdpx2|Trx dependent peroxide reductase 2|macrophage 23kDa stress protein|macrophase stress protein 22kDa|osteoblast specific factor 3|prx1|thioredoxin dependent peroxide reductase 2
Full Name: peroxiredoxin 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 15279
Position: chr4: 116685544-116700822
Accession: 99523
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000151129	-	611	-	ENSMUSP00000119794	169 (aa)	-	B1AXW5
ENSMUST00000030454	-	636	-	ENSMUSP00000030454	176 (aa)	-	B1AXW6
ENSMUST00000135573	-	2294	-	ENSMUSP00000114159	199 (aa)	-	P35700
ENSMUST00000156145	-	553	-	-	- (aa)	-	-
ENSMUST00000129315	-	661	-	ENSMUSP00000117007	123 (aa)	-	B1AXW4
ENSMUST00000106470	-	877	-	ENSMUSP00000102078	199 (aa)	-	P35700

Gene Model

Click here to download ENSMUSG00000028691's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04146	Peroxisome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028691's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028691	Prdx1	100	95.935	ENSG00000117450	PRDX1	100	95.477	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000302	response to reactive oxygen species	12891360.16170382.16297875.	IMP	Process
GO:0004601	peroxidase activity	-	ISO	Function
GO:0005515	protein binding	21516123.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005719	nuclear euchromatin	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005759	mitochondrial matrix	-	ISO	Component
GO:0005782	peroxisomal matrix	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006979	response to oxidative stress	21873635.	IBA	Process
GO:0006979	response to oxidative stress	8360158.	IDA	Process
GO:0006979	response to oxidative stress	15858817.	IMP	Process
GO:0008283	cell proliferation	12891360.	IMP	Process
GO:0008379	thioredoxin peroxidase activity	21873635.	IBA	Function
GO:0008379	thioredoxin peroxidase activity	-	ISO	Function
GO:0016209	antioxidant activity	-	IEA	Function
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0019430	removal of superoxide radicals	21873635.	IBA	Process
GO:0019430	removal of superoxide radicals	16170382.16880205.	IMP	Process
GO:0020037	heme binding	-	ISO	Function
GO:0030101	natural killer cell activation	-	ISO	Process
GO:0032872	regulation of stress-activated MAPK cascade	16880205.	IMP	Process
GO:0034101	erythrocyte homeostasis	12891360.	IMP	Process
GO:0042267	natural killer cell mediated cytotoxicity	12891360.	IMP	Process
GO:0042744	hydrogen peroxide catabolic process	21873635.	IBA	Process
GO:0042744	hydrogen peroxide catabolic process	-	ISO	Process
GO:0042802	identical protein binding	21516123.	IPI	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0045321	leukocyte activation	21873635.	IBA	Process
GO:0045454	cell redox homeostasis	21873635.	IBA	Process
GO:0051920	peroxiredoxin activity	-	ISO	Function
GO:0055114	oxidation-reduction process	-	IEA	Process
GO:1901222	regulation of NIK/NF-kappaB signaling	15858817.	IMP	Process