EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000081182	-	1461	-	ENSMUSP00000079946	421 (aa)	-	Q99MD9
ENSMUST00000030457	-	2118	-	ENSMUSP00000030457	448 (aa)	-	B1AU76
ENSMUST00000030456	-	2520	-	ENSMUSP00000030456	773 (aa)	-	B1AU75
ENSMUST00000155398	-	1216	-	-	- (aa)	-	-
ENSMUST00000148436	-	560	-	-	- (aa)	-	-
ENSMUST00000130363	-	905	-	-	- (aa)	-	-
ENSMUST00000154811	-	1017	-	-	- (aa)	-	-
ENSMUST00000134038	-	3153	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028693	Nasp	99	95.620	ENSG00000132780	NASP	95	97.561	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000082	G1/S transition of mitotic cell cycle	12509435.	IDA	Process
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0001824	blastocyst development	16728391.	IMP	Process
GO:0005515	protein binding	10893414.23055941.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	10893414.12509435.	IDA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	12509435.	IDA	Component
GO:0006260	DNA replication	16728391.	IDA	Process
GO:0006334	nucleosome assembly	-	ISO	Process
GO:0006335	DNA replication-dependent nucleosome assembly	21873635.	IBA	Process
GO:0006335	DNA replication-dependent nucleosome assembly	-	ISO	Process
GO:0006336	DNA replication-independent nucleosome assembly	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0008283	cell proliferation	16728391.	IDA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0034080	CENP-A containing nucleosome assembly	21873635.	IBA	Process
GO:0042393	histone binding	21873635.	IBA	Function
GO:0042393	histone binding	10893414.12509435.	IDA	Function
GO:0042393	histone binding	-	ISO	Function
GO:0043486	histone exchange	12509435.	IDA	Process
GO:0044877	protein-containing complex binding	-	ISO	Function