EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028702 (Gene tree)
Gene ID: 19366
Gene Symbol: Rad54l
Alias: RAD54
Full Name: RAD54 like (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 29427 bases
Position: chr4:116094264-116123690
Accession: 894697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000099765	ResIII	PF04851.15	2.9e-09	1	1
ENSMUSP00000099766	ResIII	PF04851.15	2.9e-09	1	1
ENSMUSP00000099765	DEAD	PF00270.29	1.2e-06	1	1
ENSMUSP00000099766	DEAD	PF00270.29	1.2e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139147	-	4571	-	-	- (aa)	-	-
ENSMUST00000152741	-	654	-	-	- (aa)	-	-
ENSMUST00000138320	-	209	-	-	- (aa)	-	-
ENSMUST00000143089	-	1519	-	-	- (aa)	-	-
ENSMUST00000102705	-	2780	-	ENSMUSP00000099766	747 (aa)	-	P70270
ENSMUST00000102704	-	3025	XM_006502877	ENSMUSP00000099765	747 (aa)	XP_006502940	P70270

Gene Model

Click here to download ENSMUSG00000028702's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028702's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000028702	Rad54l	88	44.604	ENSMUSG00000078773	Rad54b	76	44.604
ENSMUSG00000028702	Rad54l	66	33.267	ENSMUSG00000031099	Smarca1	61	32.031
ENSMUSG00000028702	Rad54l	66	30.112	ENSMUSG00000029920	Smarcad1	50	30.112
ENSMUSG00000028702	Rad54l	66	30.785	ENSMUSG00000028089	Chd1l	50	30.584
ENSMUSG00000028702	Rad54l	66	31.164	ENSMUSG00000056608	Chd9	54	30.966

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028702	Rad54l	99	94.504	ENSG00000085999	RAD54L	100	96.000	Homo_sapiens
ENSMUSG00000028702	Rad54l	99	76.716	ENSAPOG00000011643	rad54l	99	76.716	Acanthochromis_polyacanthus
ENSMUSG00000028702	Rad54l	99	94.362	ENSAMEG00000013902	RAD54L	99	94.362	Ailuropoda_melanoleuca
ENSMUSG00000028702	Rad54l	99	77.315	ENSACIG00000001939	rad54l	99	77.315	Amphilophus_citrinellus
ENSMUSG00000028702	Rad54l	99	79.677	ENSAOCG00000017576	rad54l	99	79.677	Amphiprion_ocellaris
ENSMUSG00000028702	Rad54l	95	81.013	ENSAPEG00000020658	rad54l	98	81.013	Amphiprion_percula
ENSMUSG00000028702	Rad54l	94	81.534	ENSATEG00000006767	rad54l	99	81.534	Anabas_testudineus
ENSMUSG00000028702	Rad54l	94	86.182	ENSAPLG00000006389	RAD54L	99	86.182	Anas_platyrhynchos
ENSMUSG00000028702	Rad54l	99	83.668	ENSACAG00000002312	RAD54L	99	83.668	Anolis_carolinensis
ENSMUSG00000028702	Rad54l	99	93.968	ENSANAG00000035439	RAD54L	99	93.968	Aotus_nancymaae
ENSMUSG00000028702	Rad54l	99	76.542	ENSACLG00000018711	rad54l	99	76.542	Astatotilapia_calliptera
ENSMUSG00000028702	Rad54l	99	80.027	ENSAMXG00000012777	rad54l	99	80.027	Astyanax_mexicanus
ENSMUSG00000028702	Rad54l	100	94.786	ENSBTAG00000019901	RAD54L	99	94.786	Bos_taurus
ENSMUSG00000028702	Rad54l	93	58.250	WBGene00004298	rad-54	84	58.250	Caenorhabditis_elegans
ENSMUSG00000028702	Rad54l	99	91.310	ENSCJAG00000021080	RAD54L	94	93.440	Callithrix_jacchus
ENSMUSG00000028702	Rad54l	99	94.236	ENSCAFG00000004272	RAD54L	99	94.236	Canis_familiaris
ENSMUSG00000028702	Rad54l	99	94.228	ENSCAFG00020015066	RAD54L	99	94.228	Canis_lupus_dingo
ENSMUSG00000028702	Rad54l	99	94.511	ENSCHIG00000020118	RAD54L	99	94.511	Capra_hircus
ENSMUSG00000028702	Rad54l	99	93.574	ENSTSYG00000002032	RAD54L	99	93.574	Carlito_syrichta
ENSMUSG00000028702	Rad54l	100	94.645	ENSCPOG00000006768	RAD54L	99	94.645	Cavia_porcellus
ENSMUSG00000028702	Rad54l	99	94.638	ENSCCAG00000025783	RAD54L	99	94.638	Cebus_capucinus
ENSMUSG00000028702	Rad54l	99	94.370	ENSCATG00000030589	RAD54L	99	94.370	Cercocebus_atys
ENSMUSG00000028702	Rad54l	100	95.315	ENSCLAG00000004645	RAD54L	99	95.315	Chinchilla_lanigera
ENSMUSG00000028702	Rad54l	99	94.504	ENSCSAG00000001229	RAD54L	99	94.504	Chlorocebus_sabaeus
ENSMUSG00000028702	Rad54l	99	85.676	ENSCPBG00000005675	RAD54L	99	85.676	Chrysemys_picta_bellii
ENSMUSG00000028702	Rad54l	99	63.239	ENSCING00000024456	-	99	63.158	Ciona_intestinalis
ENSMUSG00000028702	Rad54l	99	63.069	ENSCSAVG00000010859	-	99	63.069	Ciona_savignyi
ENSMUSG00000028702	Rad54l	99	94.236	ENSCANG00000034891	RAD54L	99	94.236	Colobus_angolensis_palliatus
ENSMUSG00000028702	Rad54l	100	96.386	ENSCGRG00001014807	Rad54l	100	96.386	Cricetulus_griseus_chok1gshd
ENSMUSG00000028702	Rad54l	100	96.386	ENSCGRG00000016038	Rad54l	100	96.386	Cricetulus_griseus_crigri
ENSMUSG00000028702	Rad54l	99	77.315	ENSCSEG00000001983	rad54l	99	77.315	Cynoglossus_semilaevis
ENSMUSG00000028702	Rad54l	87	81.028	ENSCVAG00000019561	rad54l	99	81.028	Cyprinodon_variegatus
ENSMUSG00000028702	Rad54l	99	78.820	ENSDARG00000018623	rad54l	99	78.820	Danio_rerio
ENSMUSG00000028702	Rad54l	100	93.440	ENSDNOG00000003395	RAD54L	100	93.440	Dasypus_novemcinctus
ENSMUSG00000028702	Rad54l	99	84.808	ENSDORG00000002632	Rad54l	99	84.808	Dipodomys_ordii
ENSMUSG00000028702	Rad54l	99	55.851	FBgn0002989	okr	95	55.851	Drosophila_melanogaster
ENSMUSG00000028702	Rad54l	78	95.161	ENSETEG00000000550	RAD54L	78	95.161	Echinops_telfairi
ENSMUSG00000028702	Rad54l	99	94.094	ENSEASG00005004511	RAD54L	99	94.094	Equus_asinus_asinus
ENSMUSG00000028702	Rad54l	99	94.504	ENSECAG00000008760	RAD54L	99	95.122	Equus_caballus
ENSMUSG00000028702	Rad54l	100	87.818	ENSEEUG00000008113	RAD54L	100	87.818	Erinaceus_europaeus
ENSMUSG00000028702	Rad54l	99	79.840	ENSELUG00000002295	rad54l	99	79.840	Esox_lucius
ENSMUSG00000028702	Rad54l	100	93.574	ENSFCAG00000003444	RAD54L	100	93.574	Felis_catus
ENSMUSG00000028702	Rad54l	99	85.007	ENSFALG00000009480	RAD54L	99	85.007	Ficedula_albicollis
ENSMUSG00000028702	Rad54l	99	94.906	ENSFDAG00000007806	RAD54L	99	94.906	Fukomys_damarensis
ENSMUSG00000028702	Rad54l	61	76.703	ENSFHEG00000009824	rad54l	78	76.703	Fundulus_heteroclitus
ENSMUSG00000028702	Rad54l	99	77.852	ENSGMOG00000014568	rad54l	99	77.852	Gadus_morhua
ENSMUSG00000028702	Rad54l	99	84.584	ENSGALG00000010356	RAD54L	92	84.584	Gallus_gallus
ENSMUSG00000028702	Rad54l	91	78.024	ENSGAFG00000011110	rad54l	100	78.024	Gambusia_affinis
ENSMUSG00000028702	Rad54l	99	78.715	ENSGACG00000003111	rad54l	97	78.715	Gasterosteus_aculeatus
ENSMUSG00000028702	Rad54l	99	85.523	ENSGAGG00000014089	RAD54L	96	85.523	Gopherus_agassizii
ENSMUSG00000028702	Rad54l	99	94.370	ENSGGOG00000010602	RAD54L	99	94.370	Gorilla_gorilla
ENSMUSG00000028702	Rad54l	99	76.676	ENSHBUG00000007793	rad54l	99	76.676	Haplochromis_burtoni
ENSMUSG00000028702	Rad54l	99	94.772	ENSHGLG00000000753	RAD54L	99	94.772	Heterocephalus_glaber_female
ENSMUSG00000028702	Rad54l	99	94.638	ENSHGLG00100016987	RAD54L	99	94.638	Heterocephalus_glaber_male
ENSMUSG00000028702	Rad54l	99	77.600	ENSIPUG00000015999	rad54l	99	80.687	Ictalurus_punctatus
ENSMUSG00000028702	Rad54l	99	95.174	ENSSTOG00000029125	RAD54L	99	95.174	Ictidomys_tridecemlineatus
ENSMUSG00000028702	Rad54l	99	82.416	ENSJJAG00000000235	-	99	82.282	Jaculus_jaculus
ENSMUSG00000028702	Rad54l	99	77.823	ENSKMAG00000009944	rad54l	99	77.823	Kryptolebias_marmoratus
ENSMUSG00000028702	Rad54l	99	80.242	ENSLBEG00000014617	rad54l	99	81.752	Labrus_bergylta
ENSMUSG00000028702	Rad54l	99	81.099	ENSLOCG00000004144	rad54l	100	82.789	Lepisosteus_oculatus
ENSMUSG00000028702	Rad54l	99	95.034	ENSLAFG00000007583	RAD54L	99	95.034	Loxodonta_africana
ENSMUSG00000028702	Rad54l	99	94.370	ENSMFAG00000031241	RAD54L	99	94.370	Macaca_fascicularis
ENSMUSG00000028702	Rad54l	99	94.370	ENSMMUG00000011568	RAD54L	99	94.370	Macaca_mulatta
ENSMUSG00000028702	Rad54l	99	94.370	ENSMNEG00000038562	RAD54L	99	94.370	Macaca_nemestrina
ENSMUSG00000028702	Rad54l	99	94.504	ENSMLEG00000038145	RAD54L	99	94.504	Mandrillus_leucophaeus
ENSMUSG00000028702	Rad54l	99	79.116	ENSMAMG00000022180	rad54l	100	81.818	Mastacembelus_armatus
ENSMUSG00000028702	Rad54l	99	76.408	ENSMZEG00005018081	rad54l	99	76.408	Maylandia_zebra
ENSMUSG00000028702	Rad54l	99	84.698	ENSMGAG00000010634	RAD54L	99	84.698	Meleagris_gallopavo
ENSMUSG00000028702	Rad54l	100	96.252	ENSMAUG00000020076	Rad54l	100	96.252	Mesocricetus_auratus
ENSMUSG00000028702	Rad54l	99	95.845	ENSMICG00000003266	RAD54L	99	95.845	Microcebus_murinus
ENSMUSG00000028702	Rad54l	100	96.653	ENSMOCG00000001778	Rad54l	100	96.653	Microtus_ochrogaster
ENSMUSG00000028702	Rad54l	99	76.005	ENSMALG00000021148	rad54l	99	76.005	Monopterus_albus
ENSMUSG00000028702	Rad54l	100	94.010	MGP_CAROLIEiJ_G0026325	Rad54l	100	94.010	Mus_caroli
ENSMUSG00000028702	Rad54l	100	98.929	MGP_PahariEiJ_G0028657	Rad54l	100	98.929	Mus_pahari
ENSMUSG00000028702	Rad54l	100	99.866	MGP_SPRETEiJ_G0027297	Rad54l	100	99.866	Mus_spretus
ENSMUSG00000028702	Rad54l	99	93.708	ENSMPUG00000012883	RAD54L	99	93.708	Mustela_putorius_furo
ENSMUSG00000028702	Rad54l	99	95.034	ENSMLUG00000003763	RAD54L	99	95.034	Myotis_lucifugus
ENSMUSG00000028702	Rad54l	100	94.244	ENSNGAG00000024213	Rad54l	100	94.244	Nannospalax_galili
ENSMUSG00000028702	Rad54l	99	94.504	ENSNLEG00000016548	RAD54L	99	94.504	Nomascus_leucogenys
ENSMUSG00000028702	Rad54l	90	84.172	ENSMEUG00000006793	RAD54L	99	84.172	Notamacropus_eugenii
ENSMUSG00000028702	Rad54l	91	95.139	ENSOPRG00000016016	RAD54L	91	95.139	Ochotona_princeps
ENSMUSG00000028702	Rad54l	100	95.315	ENSODEG00000008519	RAD54L	99	95.315	Octodon_degus
ENSMUSG00000028702	Rad54l	99	76.542	ENSONIG00000007659	rad54l	99	76.542	Oreochromis_niloticus
ENSMUSG00000028702	Rad54l	100	94.378	ENSOCUG00000005229	RAD54L	100	94.378	Oryctolagus_cuniculus
ENSMUSG00000028702	Rad54l	99	77.450	ENSORLG00000002958	rad54l	99	78.389	Oryzias_latipes
ENSMUSG00000028702	Rad54l	99	78.523	ENSORLG00020006554	rad54l	99	81.232	Oryzias_latipes_hni
ENSMUSG00000028702	Rad54l	99	78.255	ENSORLG00015002907	rad54l	99	78.523	Oryzias_latipes_hsok
ENSMUSG00000028702	Rad54l	99	78.523	ENSOMEG00000007770	rad54l	99	78.658	Oryzias_melastigma
ENSMUSG00000028702	Rad54l	100	94.393	ENSOARG00000002264	RAD54L	99	94.393	Ovis_aries
ENSMUSG00000028702	Rad54l	99	94.236	ENSPPAG00000031222	RAD54L	99	94.236	Pan_paniscus
ENSMUSG00000028702	Rad54l	100	93.574	ENSPPRG00000010317	RAD54L	100	93.574	Panthera_pardus
ENSMUSG00000028702	Rad54l	100	93.574	ENSPTIG00000012200	RAD54L	100	93.574	Panthera_tigris_altaica
ENSMUSG00000028702	Rad54l	99	94.370	ENSPTRG00000000689	RAD54L	99	94.370	Pan_troglodytes
ENSMUSG00000028702	Rad54l	99	94.504	ENSPANG00000016295	RAD54L	99	94.504	Papio_anubis
ENSMUSG00000028702	Rad54l	99	76.747	ENSPKIG00000016172	rad54l	99	76.747	Paramormyrops_kingsleyae
ENSMUSG00000028702	Rad54l	99	85.501	ENSPSIG00000003258	RAD54L	99	85.501	Pelodiscus_sinensis
ENSMUSG00000028702	Rad54l	99	75.335	ENSPMGG00000016335	rad54l	99	75.335	Periophthalmus_magnuspinnatus
ENSMUSG00000028702	Rad54l	100	96.386	ENSPEMG00000011422	Rad54l	100	96.386	Peromyscus_maniculatus_bairdii
ENSMUSG00000028702	Rad54l	99	70.761	ENSPMAG00000007719	rad54l	99	70.761	Petromyzon_marinus
ENSMUSG00000028702	Rad54l	99	86.997	ENSPCIG00000029032	RAD54L	99	86.997	Phascolarctos_cinereus
ENSMUSG00000028702	Rad54l	85	80.660	ENSPFOG00000013732	rad54l	100	80.660	Poecilia_formosa
ENSMUSG00000028702	Rad54l	81	79.221	ENSPLAG00000023416	rad54l	99	79.221	Poecilia_latipinna
ENSMUSG00000028702	Rad54l	91	78.171	ENSPMEG00000008299	rad54l	100	78.171	Poecilia_mexicana
ENSMUSG00000028702	Rad54l	99	76.542	ENSPREG00000019955	rad54l	99	76.542	Poecilia_reticulata
ENSMUSG00000028702	Rad54l	94	93.262	ENSPPYG00000001398	RAD54L	99	93.262	Pongo_abelii
ENSMUSG00000028702	Rad54l	80	93.689	ENSPCAG00000005323	RAD54L	80	93.689	Procavia_capensis
ENSMUSG00000028702	Rad54l	100	95.448	ENSPCOG00000015423	RAD54L	100	95.448	Propithecus_coquereli
ENSMUSG00000028702	Rad54l	99	72.944	ENSPNYG00000002942	rad54l	99	72.944	Pundamilia_nyererei
ENSMUSG00000028702	Rad54l	99	79.088	ENSPNAG00000012483	rad54l	99	79.088	Pygocentrus_nattereri
ENSMUSG00000028702	Rad54l	100	98.126	ENSRNOG00000013148	Rad54l	99	98.126	Rattus_norvegicus
ENSMUSG00000028702	Rad54l	99	94.236	ENSRBIG00000043495	RAD54L	99	94.236	Rhinopithecus_bieti
ENSMUSG00000028702	Rad54l	99	94.370	ENSRROG00000020844	RAD54L	99	94.370	Rhinopithecus_roxellana
ENSMUSG00000028702	Rad54l	80	47.920	YGL163C	RAD54	71	48.382	Saccharomyces_cerevisiae
ENSMUSG00000028702	Rad54l	99	94.638	ENSSBOG00000024672	RAD54L	99	94.638	Saimiri_boliviensis_boliviensis
ENSMUSG00000028702	Rad54l	99	87.467	ENSSHAG00000000110	RAD54L	99	87.467	Sarcophilus_harrisii
ENSMUSG00000028702	Rad54l	99	79.625	ENSSDUG00000019147	rad54l	99	79.625	Seriola_dumerili
ENSMUSG00000028702	Rad54l	99	79.893	ENSSLDG00000012330	rad54l	99	79.893	Seriola_lalandi_dorsalis
ENSMUSG00000028702	Rad54l	83	88.122	ENSSARG00000006689	RAD54L	100	88.122	Sorex_araneus
ENSMUSG00000028702	Rad54l	99	78.898	ENSSPAG00000011016	rad54l	99	78.898	Stegastes_partitus
ENSMUSG00000028702	Rad54l	99	94.102	ENSSSCG00000003905	RAD54L	99	94.102	Sus_scrofa
ENSMUSG00000028702	Rad54l	99	84.471	ENSTGUG00000008233	RAD54L	99	84.605	Taeniopygia_guttata
ENSMUSG00000028702	Rad54l	99	75.067	ENSTRUG00000008410	rad54l	99	75.067	Takifugu_rubripes
ENSMUSG00000028702	Rad54l	99	75.302	ENSTNIG00000004716	rad54l	99	75.737	Tetraodon_nigroviridis
ENSMUSG00000028702	Rad54l	100	85.810	ENSTTRG00000006315	RAD54L	100	85.810	Tursiops_truncatus
ENSMUSG00000028702	Rad54l	99	93.792	ENSUAMG00000011824	RAD54L	99	93.792	Ursus_americanus
ENSMUSG00000028702	Rad54l	99	92.713	ENSUMAG00000023603	RAD54L	99	92.713	Ursus_maritimus
ENSMUSG00000028702	Rad54l	99	94.236	ENSVVUG00000007201	RAD54L	99	94.236	Vulpes_vulpes
ENSMUSG00000028702	Rad54l	96	77.608	ENSXETG00000004369	rad54l	99	77.608	Xenopus_tropicalis
ENSMUSG00000028702	Rad54l	55	74.515	ENSXCOG00000016028	rad54l	81	78.591	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000724	double-strand break repair via homologous recombination	16428451.	IGI	Process
GO:0000724	double-strand break repair via homologous recombination	19061978.	IMP	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006302	double-strand break repair	15175260.	IGI	Process
GO:0006974	cellular response to DNA damage stimulus	19061978.	IGI	Process
GO:0006974	cellular response to DNA damage stimulus	16428451.	IMP	Process
GO:0008340	determination of adult lifespan	19061978.	IGI	Process
GO:0010212	response to ionizing radiation	19061978.	IGI	Process
GO:0010212	response to ionizing radiation	16428451.20150414.	IMP	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0036310	annealing helicase activity	-	ISO	Function
GO:0042493	response to drug	16428451.	IMP	Process
GO:0051276	chromosome organization	15175260.	IGI	Process