EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028800 (Gene tree)
Gene ID: 433759
Gene Symbol: Hdac1
Alias: HD1|MommeD5|RPD3
Full Name: histone deacetylase 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 26610
Position: chr4: 129516104-129542713
Accession: 108086
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000142984	-	810	-	-	- (aa)	-	-
ENSMUST00000132909	-	473	-	-	- (aa)	-	-
ENSMUST00000102597	-	2038	-	ENSMUSP00000099657	482 (aa)	-	O09106
ENSMUST00000139305	-	754	-	-	- (aa)	-	-
ENSMUST00000145628	-	844	-	-	- (aa)	-	-
ENSMUST00000150105	-	803	-	-	- (aa)	-	-
ENSMUST00000125718	-	759	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028800's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04110	Cell cycle	KEGG
mmu04213	Longevity regulating pathway - multiple species	KEGG
mmu04330	Notch signaling pathway	KEGG
mmu04919	Thyroid hormone signaling pathway	KEGG
mmu05016	Huntington disease	KEGG
mmu05031	Amphetamine addiction	KEGG
mmu05034	Alcoholism	KEGG
mmu05165	Human papillomavirus infection	KEGG
mmu05169	Epstein-Barr virus infection	KEGG
mmu05200	Pathways in cancer	KEGG
mmu05202	Transcriptional misregulation in cancer	KEGG
mmu05203	Viral carcinogenesis	KEGG
mmu05220	Chronic myeloid leukemia	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028800's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000118	histone deacetylase complex	21873635.	IBA	Component
GO:0000118	histone deacetylase complex	14645126.	IPI	Component
GO:0000118	histone deacetylase complex	12711221.	TAS	Component
GO:0000122	negative regulation of transcription by RNA polymerase II	8917507.9271381.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	21093383.	IGI	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000785	chromatin	-	ISO	Component
GO:0000790	nuclear chromatin	21093383.	IDA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000792	heterochromatin	14519686.14643676.	IDA	Component
GO:0000976	transcription regulatory region sequence-specific DNA binding	21680841.24413057.	IDA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	-	ISO	Function
GO:0001046	core promoter sequence-specific DNA binding	-	ISO	Function
GO:0001085	RNA polymerase II transcription factor binding	-	ISO	Function
GO:0001103	RNA polymerase II repressing transcription factor binding	19235719.	IPI	Function
GO:0001103	RNA polymerase II repressing transcription factor binding	-	ISO	Function
GO:0001975	response to amphetamine	-	ISO	Process
GO:0002039	p53 binding	-	ISO	Function
GO:0003677	DNA binding	14593184.15608638.	IDA	Function
GO:0003682	chromatin binding	16109736.16678101.17905753.	IDA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	17392792.	IDA	Function
GO:0003714	transcription corepressor activity	8917507.15509593.	IDA	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0004407	histone deacetylase activity	21873635.	IBA	Function
GO:0004407	histone deacetylase activity	10615135.21960634.	IDA	Function
GO:0004407	histone deacetylase activity	-	ISO	Function
GO:0005515	protein binding	8917507.9139821.10615135.11115394.11641275.11836251.11923873.11931769.12198165.12529400.12900441.14645126.15226430.15337766.15509593.16085498.16103876.16109736.16407974.16462733.16805913.17056544.17442941.17568773.19144721.19424149.19497860.19501046.19503085.19796622.20404188.20596014.20599664.21177534.21448134.21454521.21931736.21937600.21960634.22075476.22242125.22297846.22770845.24240174.24335282.24413057.24736997.26816381.26974661.28554894.	IPI	Function
GO:0005634	nucleus	20720167.21874024.22770845.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	17707228.	IDA	Component
GO:0005667	transcription factor complex	17182846.	IPI	Component
GO:0005737	cytoplasm	12711221.	TAS	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006325	chromatin organization	12711221.	TAS	Process
GO:0006346	methylation-dependent chromatin silencing	-	ISO	Process
GO:0006357	regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0006476	protein deacetylation	-	ISO	Process
GO:0007492	endoderm development	15060137.	IDA	Process
GO:0007492	endoderm development	15060137.	IMP	Process
GO:0007623	circadian rhythm	24736997.	IDA	Process
GO:0008134	transcription factor binding	18486321.	IPI	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0008134	transcription factor binding	12711221.	TAS	Function
GO:0008284	positive regulation of cell proliferation	21093383.	IGI	Process
GO:0008284	positive regulation of cell proliferation	-	ISO	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0009913	epidermal cell differentiation	21093383.	IGI	Process
GO:0010629	negative regulation of gene expression	-	ISO	Process
GO:0010870	positive regulation of receptor biosynthetic process	-	ISO	Process
GO:0016575	histone deacetylation	-	ISO	Process
GO:0016580	Sin3 complex	-	ISO	Component
GO:0016581	NuRD complex	11836251.22075476.	IDA	Component
GO:0016581	NuRD complex	14645126.16462733.	IPI	Component
GO:0016581	NuRD complex	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0017053	transcriptional repressor complex	17182846.	IPI	Component
GO:0019213	deacetylase activity	15226430.	IDA	Function
GO:0019213	deacetylase activity	-	ISO	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0021766	hippocampus development	19380719.	IGI	Process
GO:0030182	neuron differentiation	19380719.	IGI	Process
GO:0032041	NAD-dependent histone deacetylase activity (H3-K14 specific)	-	IEA	Function
GO:0032732	positive regulation of interleukin-1 production	-	ISO	Process
GO:0032760	positive regulation of tumor necrosis factor production	-	ISO	Process
GO:0032922	circadian regulation of gene expression	15226430.	IDA	Process
GO:0032991	protein-containing complex	19796622.	IDA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033558	protein deacetylase activity	-	ISO	Function
GO:0033613	activating transcription factor binding	-	ISO	Function
GO:0034599	cellular response to oxidative stress	-	ISO	Process
GO:0035851	Krueppel-associated box domain binding	21177534.	IPI	Function
GO:0042475	odontogenesis of dentin-containing tooth	21093383.	IGI	Process
GO:0042531	positive regulation of tyrosine phosphorylation of STAT protein	-	ISO	Process
GO:0042733	embryonic digit morphogenesis	21093383.	IGI	Process
GO:0042826	histone deacetylase binding	-	ISO	Function
GO:0043005	neuron projection	-	ISO	Component
GO:0043025	neuronal cell body	18651664.	IDA	Component
GO:0043066	negative regulation of apoptotic process	21093383.	IGI	Process
GO:0043124	negative regulation of I-kappaB kinase/NF-kappaB signaling	19805123.	IGI	Process
GO:0043524	negative regulation of neuron apoptotic process	-	ISO	Process
GO:0043922	negative regulation by host of viral transcription	-	ISO	Process
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	9271381.21960634.	IDA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046676	negative regulation of insulin secretion	-	ISO	Process
GO:0047485	protein N-terminus binding	17150957.	ISO	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0048511	rhythmic process	-	IEA	Process
GO:0048714	positive regulation of oligodendrocyte differentiation	19503085.	IGI	Process
GO:0048714	positive regulation of oligodendrocyte differentiation	-	ISO	Process
GO:0051059	NF-kappaB binding	-	ISO	Function
GO:0052548	regulation of endopeptidase activity	-	ISO	Process
GO:0060766	negative regulation of androgen receptor signaling pathway	-	ISO	Process
GO:0060789	hair follicle placode formation	21093383.	IGI	Process
GO:0061029	eyelid development in camera-type eye	21093383.	IGI	Process
GO:0061198	fungiform papilla formation	21093383.	IGI	Process
GO:0070491	repressing transcription factor binding	-	ISO	Function
GO:0070822	Sin3-type complex	21873635.	IBA	Component
GO:0070888	E-box binding	24736997.	IDA	Function
GO:0070932	histone H3 deacetylation	21873635.	IBA	Process
GO:0070932	histone H3 deacetylation	15226430.	IDA	Process
GO:0070932	histone H3 deacetylation	-	ISO	Process
GO:0070933	histone H4 deacetylation	21873635.	IBA	Process
GO:0070933	histone H4 deacetylation	15226430.	IDA	Process
GO:0070933	histone H4 deacetylation	-	ISO	Process
GO:0090090	negative regulation of canonical Wnt signaling pathway	19503085.	IGI	Process
GO:0090090	negative regulation of canonical Wnt signaling pathway	-	ISO	Process
GO:1990841	promoter-specific chromatin binding	22770845.	IDA	Function
GO:2000343	positive regulation of chemokine (C-X-C motif) ligand 2 production	-	ISO	Process
GO:2000676	positive regulation of type B pancreatic cell apoptotic process	-	ISO	Process
GO:2000757	negative regulation of peptidyl-lysine acetylation	-	ISO	Process
GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	21093383.	IGI	Process