EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028809 (Gene tree)
Gene ID: 51796
Gene Symbol: Srrm1
Alias: SRm160
Full Name: serine/arginine repetitive matrix 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 32838 bases
Position: chr4:135320484-135353321
Accession: 1858303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000122754	PWI	PF01480.17	1.1e-30	1	1
ENSMUSP00000101487	PWI	PF01480.17	1.5e-29	1	1
ENSMUSP00000030613	PWI	PF01480.17	1.5e-29	1	1
ENSMUSP00000081906	PWI	PF01480.17	1.5e-29	1	1
ENSMUSP00000125003	PWI	PF01480.17	1.5e-29	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000131301	-	796	-	ENSMUSP00000125477	239 (aa)	-	F7BWM1
ENSMUST00000136570	-	373	-	-	- (aa)	-	-
ENSMUST00000136409	-	637	-	ENSMUSP00000124450	140 (aa)	-	F6T4M4
ENSMUST00000140050	-	952	-	ENSMUSP00000120952	318 (aa)	-	F6UK16
ENSMUST00000134854	-	2847	-	-	- (aa)	-	-
ENSMUST00000084846	-	3740	-	ENSMUSP00000081906	918 (aa)	-	A2A8V9
ENSMUST00000030613	-	2940	-	ENSMUSP00000030613	897 (aa)	-	E9QKA4
ENSMUST00000105861	-	3797	XM_006539027	ENSMUSP00000101487	909 (aa)	XP_006539090	A2A8V8
ENSMUST00000162914	-	512	-	-	- (aa)	-	-
ENSMUST00000136342	-	3152	XM_006539026	ENSMUSP00000125003	923 (aa)	XP_006539089	E9PUK6
ENSMUST00000154788	-	776	-	-	- (aa)	-	-
ENSMUST00000150619	-	4542	-	-	- (aa)	-	-
ENSMUST00000151251	-	681	-	-	- (aa)	-	-
ENSMUST00000134019	-	1073	-	-	- (aa)	-	-
ENSMUST00000131373	-	619	-	ENSMUSP00000122754	198 (aa)	-	A2A983

Gene Model

Click here to download ENSMUSG00000028809's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028809's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028809	Srrm1	100	85.965	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSMUSG00000028809	Srrm1	100	85.965	ENSAMEG00000010075	SRRM1	59	97.166	Ailuropoda_melanoleuca
ENSMUSG00000028809	Srrm1	94	82.353	ENSACIG00000023398	-	79	81.675	Amphilophus_citrinellus
ENSMUSG00000028809	Srrm1	100	76.419	ENSAPLG00000002066	SRRM1	59	65.882	Anas_platyrhynchos
ENSMUSG00000028809	Srrm1	73	94.444	ENSACLG00000019786	-	77	82.723	Astatotilapia_calliptera
ENSMUSG00000028809	Srrm1	96	84.211	ENSAMXG00000040320	-	73	94.872	Astyanax_mexicanus
ENSMUSG00000028809	Srrm1	100	85.965	ENSBTAG00000013772	SRRM1	56	97.309	Bos_taurus
ENSMUSG00000028809	Srrm1	100	85.965	ENSCAFG00020020948	SRRM1	99	94.153	Canis_lupus_dingo
ENSMUSG00000028809	Srrm1	100	85.965	ENSCHIG00000014656	SRRM1	55	97.619	Capra_hircus
ENSMUSG00000028809	Srrm1	100	85.965	ENSCCAG00000029474	SRRM1	96	96.755	Cebus_capucinus
ENSMUSG00000028809	Srrm1	72	96.056	ENSCHOG00000000027	SRRM1	73	96.056	Choloepus_hoffmanni
ENSMUSG00000028809	Srrm1	69	69.853	ENSCING00000022242	-	100	63.522	Ciona_intestinalis
ENSMUSG00000028809	Srrm1	63	73.600	ENSCSAVG00000003919	-	99	59.113	Ciona_savignyi
ENSMUSG00000028809	Srrm1	100	97.360	ENSCGRG00001014174	Srrm1	100	97.360	Cricetulus_griseus_chok1gshd
ENSMUSG00000028809	Srrm1	99	97.380	ENSCGRG00000017603	Srrm1	100	97.380	Cricetulus_griseus_crigri
ENSMUSG00000028809	Srrm1	92	76.684	ENSCVAG00000000504	-	72	89.286	Cyprinodon_variegatus
ENSMUSG00000028809	Srrm1	100	95.455	ENSDORG00000028601	-	100	95.455	Dipodomys_ordii
ENSMUSG00000028809	Srrm1	55	78.899	ENSEBUG00000002653	-	81	73.554	Eptatretus_burgeri
ENSMUSG00000028809	Srrm1	100	85.526	ENSEASG00005004270	SRRM1	56	96.861	Equus_asinus_asinus
ENSMUSG00000028809	Srrm1	100	85.526	ENSECAG00000026981	SRRM1	56	96.861	Equus_caballus
ENSMUSG00000028809	Srrm1	100	60.965	ENSEEUG00000013830	SRRM1	63	85.650	Erinaceus_europaeus
ENSMUSG00000028809	Srrm1	100	92.857	ENSFCAG00000034671	-	78	92.857	Felis_catus
ENSMUSG00000028809	Srrm1	100	85.965	ENSFCAG00000000678	-	59	97.166	Felis_catus
ENSMUSG00000028809	Srrm1	97	78.378	ENSFALG00000000476	SRRM1	100	100.000	Ficedula_albicollis
ENSMUSG00000028809	Srrm1	100	85.965	ENSFDAG00000009903	SRRM1	56	98.206	Fukomys_damarensis
ENSMUSG00000028809	Srrm1	92	75.676	ENSFHEG00000007359	-	83	91.358	Fundulus_heteroclitus
ENSMUSG00000028809	Srrm1	100	79.736	ENSGALG00000001283	SRRM1	99	100.000	Gallus_gallus
ENSMUSG00000028809	Srrm1	92	77.720	ENSGAFG00000019431	-	98	62.782	Gambusia_affinis
ENSMUSG00000028809	Srrm1	51	94.366	ENSHBUG00000020354	-	99	94.872	Haplochromis_burtoni
ENSMUSG00000028809	Srrm1	68	90.299	ENSHGLG00100017918	-	100	90.299	Heterocephalus_glaber_male
ENSMUSG00000028809	Srrm1	51	81.944	ENSHGLG00100010430	-	99	78.750	Heterocephalus_glaber_male
ENSMUSG00000028809	Srrm1	56	87.179	ENSKMAG00000013810	-	97	83.696	Kryptolebias_marmoratus
ENSMUSG00000028809	Srrm1	100	85.965	ENSMLEG00000038030	-	90	97.166	Mandrillus_leucophaeus
ENSMUSG00000028809	Srrm1	73	94.444	ENSMZEG00005006344	-	77	82.723	Maylandia_zebra
ENSMUSG00000028809	Srrm1	100	97.944	ENSMAUG00000015705	Srrm1	100	97.944	Mesocricetus_auratus
ENSMUSG00000028809	Srrm1	91	82.514	ENSMMOG00000002390	-	77	94.872	Mola_mola
ENSMUSG00000028809	Srrm1	92	73.196	ENSMALG00000010813	-	80	71.649	Monopterus_albus
ENSMUSG00000028809	Srrm1	100	100.000	MGP_CAROLIEiJ_G0026636	Srrm1	100	100.000	Mus_caroli
ENSMUSG00000028809	Srrm1	100	100.000	MGP_PahariEiJ_G0028969	Srrm1	100	100.000	Mus_pahari
ENSMUSG00000028809	Srrm1	100	100.000	MGP_SPRETEiJ_G0027616	Srrm1	100	100.000	Mus_spretus
ENSMUSG00000028809	Srrm1	100	98.990	ENSMPUG00000015831	-	93	98.990	Mustela_putorius_furo
ENSMUSG00000028809	Srrm1	100	96.750	ENSNGAG00000014562	Srrm1	100	96.750	Nannospalax_galili
ENSMUSG00000028809	Srrm1	95	81.915	ENSNBRG00000010911	-	78	81.675	Neolamprologus_brichardi
ENSMUSG00000028809	Srrm1	100	85.965	ENSNLEG00000008966	SRRM1	94	97.368	Nomascus_leucogenys
ENSMUSG00000028809	Srrm1	53	85.621	ENSMEUG00000014704	SRRM1	52	86.275	Notamacropus_eugenii
ENSMUSG00000028809	Srrm1	51	90.141	ENSODEG00000002361	-	100	89.744	Octodon_degus
ENSMUSG00000028809	Srrm1	51	95.775	ENSODEG00000019473	-	100	96.154	Octodon_degus
ENSMUSG00000028809	Srrm1	51	97.183	ENSODEG00000007221	-	92	97.183	Octodon_degus
ENSMUSG00000028809	Srrm1	92	80.526	ENSORLG00000017510	-	80	80.729	Oryzias_latipes
ENSMUSG00000028809	Srrm1	51	94.366	ENSORLG00020018419	-	99	94.872	Oryzias_latipes_hni
ENSMUSG00000028809	Srrm1	95	96.127	ENSOARG00000006453	SRRM1	99	94.601	Ovis_aries
ENSMUSG00000028809	Srrm1	100	85.965	ENSPPRG00000002509	SRRM1	59	97.166	Panthera_pardus
ENSMUSG00000028809	Srrm1	88	82.286	ENSPTIG00000022093	-	85	80.769	Panthera_tigris_altaica
ENSMUSG00000028809	Srrm1	90	78.652	ENSPMGG00000009036	-	73	92.308	Periophthalmus_magnuspinnatus
ENSMUSG00000028809	Srrm1	100	98.268	ENSPEMG00000006254	Srrm1	100	98.268	Peromyscus_maniculatus_bairdii
ENSMUSG00000028809	Srrm1	51	94.366	ENSPMEG00000011776	-	99	94.872	Poecilia_mexicana
ENSMUSG00000028809	Srrm1	51	94.366	ENSPMEG00000002615	-	99	94.872	Poecilia_mexicana
ENSMUSG00000028809	Srrm1	52	95.858	ENSPCAG00000015138	SRRM1	52	95.858	Procavia_capensis
ENSMUSG00000028809	Srrm1	100	85.526	ENSPVAG00000005836	SRRM1	59	96.761	Pteropus_vampyrus
ENSMUSG00000028809	Srrm1	73	94.444	ENSPNYG00000005058	-	77	82.723	Pundamilia_nyererei
ENSMUSG00000028809	Srrm1	59	84.337	ENSPNAG00000005888	-	75	93.590	Pygocentrus_nattereri
ENSMUSG00000028809	Srrm1	100	98.790	ENSRNOG00000018194	Srrm1	100	98.790	Rattus_norvegicus
ENSMUSG00000028809	Srrm1	100	69.266	ENSRROG00000041543	-	52	68.421	Rhinopithecus_roxellana
ENSMUSG00000028809	Srrm1	91	95.859	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000028809	Srrm1	90	76.374	ENSSMAG00000009318	-	80	76.471	Scophthalmus_maximus
ENSMUSG00000028809	Srrm1	58	65.854	ENSSLDG00000003901	-	63	69.106	Seriola_lalandi_dorsalis
ENSMUSG00000028809	Srrm1	100	73.684	ENSSARG00000013718	SRRM1	60	89.542	Sorex_araneus
ENSMUSG00000028809	Srrm1	96	85.520	ENSSSCG00000032947	SRRM1	58	96.861	Sus_scrofa
ENSMUSG00000028809	Srrm1	51	98.611	ENSTGUG00000016669	-	99	100.000	Taeniopygia_guttata
ENSMUSG00000028809	Srrm1	96	85.520	ENSTTRG00000009365	SRRM1	59	97.083	Tursiops_truncatus
ENSMUSG00000028809	Srrm1	59	89.024	ENSUAMG00000011740	-	87	100.000	Ursus_americanus
ENSMUSG00000028809	Srrm1	91	94.254	ENSUMAG00000013121	SRRM1	95	94.254	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000375	RNA splicing, via transesterification reactions	9531537.	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	9531537.	ISO	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	9531537.	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	11555636.	IDA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016363	nuclear matrix	9531537.	ISO	Component