EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028811 (Gene tree)
Gene ID: 107271
Gene Symbol: Yars
Alias: -
Full Name: tyrosyl-tRNA synthetase
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 29848 bases
Position: chr4:129189760-129219607
Accession: 2147627
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000101669	tRNA_bind	PF01588.20	1.2e-32	1	1
ENSMUSP00000101669	tRNA-synt_1b	PF00579.25	1.7e-75	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000106054	-	2909	-	ENSMUSP00000101669	564 (aa)	-	A2A7S7
ENSMUST00000140708	-	527	-	-	- (aa)	-	-
ENSMUST00000137591	-	921	-	-	- (aa)	-	-
ENSMUST00000147248	-	600	-	-	- (aa)	-	-
ENSMUST00000128287	-	647	-	-	- (aa)	-	-
ENSMUST00000148619	-	2440	-	-	- (aa)	-	-
ENSMUST00000133992	-	834	-	ENSMUSP00000118512	129 (aa)	-	F6VXZ2
ENSMUST00000146106	-	610	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028811's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028811's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028811	Yars	94	96.591	ENSG00000134684	YARS	100	96.591	Homo_sapiens
ENSMUSG00000028811	Yars	94	78.424	ENSAPOG00000020788	yars	100	78.612	Acanthochromis_polyacanthus
ENSMUSG00000028811	Yars	94	96.023	ENSAMEG00000007476	YARS	100	96.023	Ailuropoda_melanoleuca
ENSMUSG00000028811	Yars	94	79.545	ENSACIG00000017504	yars	100	79.545	Amphilophus_citrinellus
ENSMUSG00000028811	Yars	94	78.839	ENSAOCG00000009987	yars	100	79.213	Amphiprion_ocellaris
ENSMUSG00000028811	Yars	94	78.839	ENSAPEG00000001273	yars	100	79.213	Amphiprion_percula
ENSMUSG00000028811	Yars	94	79.401	ENSATEG00000005301	yars	100	79.775	Anabas_testudineus
ENSMUSG00000028811	Yars	91	81.818	ENSAPLG00000005739	YARS	98	81.818	Anas_platyrhynchos
ENSMUSG00000028811	Yars	93	85.579	ENSACAG00000003568	YARS	99	85.579	Anolis_carolinensis
ENSMUSG00000028811	Yars	94	96.591	ENSANAG00000034533	YARS	100	96.591	Aotus_nancymaae
ENSMUSG00000028811	Yars	94	78.788	ENSACLG00000004618	yars	100	78.788	Astatotilapia_calliptera
ENSMUSG00000028811	Yars	94	81.321	ENSAMXG00000010993	yars	100	81.321	Astyanax_mexicanus
ENSMUSG00000028811	Yars	94	95.644	ENSBTAG00000018065	YARS	100	95.644	Bos_taurus
ENSMUSG00000028811	Yars	94	96.212	ENSCJAG00000001037	YARS	100	96.212	Callithrix_jacchus
ENSMUSG00000028811	Yars	100	94.858	ENSCAFG00000010481	YARS	100	94.858	Canis_familiaris
ENSMUSG00000028811	Yars	100	91.135	ENSCAFG00020025379	YARS	100	96.219	Canis_lupus_dingo
ENSMUSG00000028811	Yars	94	95.455	ENSCHIG00000014340	YARS	100	95.455	Capra_hircus
ENSMUSG00000028811	Yars	94	95.833	ENSTSYG00000005019	YARS	100	95.833	Carlito_syrichta
ENSMUSG00000028811	Yars	84	67.442	ENSCAPG00000008627	YARS	100	67.442	Cavia_aperea
ENSMUSG00000028811	Yars	100	93.794	ENSCPOG00000009614	YARS	100	93.794	Cavia_porcellus
ENSMUSG00000028811	Yars	96	95.009	ENSCCAG00000036757	YARS	99	95.353	Cebus_capucinus
ENSMUSG00000028811	Yars	100	94.504	ENSCATG00000044394	YARS	100	96.591	Cercocebus_atys
ENSMUSG00000028811	Yars	100	93.451	ENSCLAG00000008977	YARS	100	93.805	Chinchilla_lanigera
ENSMUSG00000028811	Yars	94	96.591	ENSCSAG00000001062	YARS	100	96.591	Chlorocebus_sabaeus
ENSMUSG00000028811	Yars	90	85.265	ENSCHOG00000003939	YARS	100	85.069	Choloepus_hoffmanni
ENSMUSG00000028811	Yars	94	87.311	ENSCPBG00000010998	YARS	100	87.311	Chrysemys_picta_bellii
ENSMUSG00000028811	Yars	93	70.076	ENSCING00000005113	-	99	70.943	Ciona_intestinalis
ENSMUSG00000028811	Yars	93	67.871	ENSCSAVG00000003706	-	99	68.000	Ciona_savignyi
ENSMUSG00000028811	Yars	94	96.780	ENSCANG00000038285	YARS	100	96.780	Colobus_angolensis_palliatus
ENSMUSG00000028811	Yars	100	97.163	ENSCGRG00001010863	Yars	100	97.163	Cricetulus_griseus_chok1gshd
ENSMUSG00000028811	Yars	100	97.163	ENSCGRG00000007526	Yars	100	97.163	Cricetulus_griseus_crigri
ENSMUSG00000028811	Yars	94	78.639	ENSCSEG00000009643	yars	100	78.828	Cynoglossus_semilaevis
ENSMUSG00000028811	Yars	94	80.377	ENSCVAG00000016583	yars	100	80.377	Cyprinodon_variegatus
ENSMUSG00000028811	Yars	94	82.042	ENSDARG00000035913	yars	100	91.954	Danio_rerio
ENSMUSG00000028811	Yars	94	94.886	ENSDNOG00000000536	YARS	100	94.886	Dasypus_novemcinctus
ENSMUSG00000028811	Yars	94	96.212	ENSDORG00000011871	Yars	100	96.212	Dipodomys_ordii
ENSMUSG00000028811	Yars	90	68.811	FBgn0027080	TyrRS	97	69.006	Drosophila_melanogaster
ENSMUSG00000028811	Yars	81	97.619	ENSETEG00000000215	YARS	87	97.619	Echinops_telfairi
ENSMUSG00000028811	Yars	92	67.300	ENSEBUG00000004750	yars	99	67.173	Eptatretus_burgeri
ENSMUSG00000028811	Yars	100	92.580	ENSEASG00005011762	YARS	100	92.226	Equus_asinus_asinus
ENSMUSG00000028811	Yars	100	92.566	ENSECAG00000010015	YARS	73	92.743	Equus_caballus
ENSMUSG00000028811	Yars	82	73.684	ENSEEUG00000005992	-	88	73.684	Erinaceus_europaeus
ENSMUSG00000028811	Yars	94	80.492	ENSELUG00000017171	yars	100	80.492	Esox_lucius
ENSMUSG00000028811	Yars	81	98.684	ENSFCAG00000000704	YARS	100	98.684	Felis_catus
ENSMUSG00000028811	Yars	92	88.484	ENSFALG00000000592	YARS	94	87.759	Ficedula_albicollis
ENSMUSG00000028811	Yars	100	94.149	ENSFDAG00000006620	YARS	100	94.149	Fukomys_damarensis
ENSMUSG00000028811	Yars	94	79.699	ENSFHEG00000022444	yars	100	80.075	Fundulus_heteroclitus
ENSMUSG00000028811	Yars	90	76.621	ENSGMOG00000006555	yars	100	76.621	Gadus_morhua
ENSMUSG00000028811	Yars	94	87.006	ENSGALG00000003563	YARS	99	87.006	Gallus_gallus
ENSMUSG00000028811	Yars	94	78.154	ENSGACG00000008516	yars	100	78.719	Gasterosteus_aculeatus
ENSMUSG00000028811	Yars	94	87.121	ENSGAGG00000024290	YARS	100	87.121	Gopherus_agassizii
ENSMUSG00000028811	Yars	100	93.617	ENSGGOG00000014013	YARS	100	96.402	Gorilla_gorilla
ENSMUSG00000028811	Yars	94	77.196	ENSHBUG00000018909	yars	100	77.383	Haplochromis_burtoni
ENSMUSG00000028811	Yars	100	93.972	ENSHGLG00000013843	YARS	100	93.972	Heterocephalus_glaber_female
ENSMUSG00000028811	Yars	94	93.371	ENSHGLG00100002785	-	100	93.371	Heterocephalus_glaber_male
ENSMUSG00000028811	Yars	65	91.826	ENSHGLG00100020546	-	99	91.826	Heterocephalus_glaber_male
ENSMUSG00000028811	Yars	94	75.556	ENSHCOG00000006672	yars	100	75.970	Hippocampus_comes
ENSMUSG00000028811	Yars	93	80.492	ENSIPUG00000021749	yars	99	80.492	Ictalurus_punctatus
ENSMUSG00000028811	Yars	100	94.858	ENSSTOG00000012031	YARS	100	94.858	Ictidomys_tridecemlineatus
ENSMUSG00000028811	Yars	100	93.274	ENSJJAG00000013281	Yars	100	93.274	Jaculus_jaculus
ENSMUSG00000028811	Yars	94	78.008	ENSKMAG00000021752	yars	100	78.195	Kryptolebias_marmoratus
ENSMUSG00000028811	Yars	94	77.383	ENSLBEG00000024080	yars	100	77.570	Labrus_bergylta
ENSMUSG00000028811	Yars	94	81.818	ENSLACG00000015577	YARS	100	81.818	Latimeria_chalumnae
ENSMUSG00000028811	Yars	93	83.491	ENSLOCG00000002165	yars	99	83.491	Lepisosteus_oculatus
ENSMUSG00000028811	Yars	95	95.167	ENSLAFG00000003786	YARS	98	95.167	Loxodonta_africana
ENSMUSG00000028811	Yars	94	90.909	ENSMFAG00000040933	YARS	100	91.098	Macaca_fascicularis
ENSMUSG00000028811	Yars	94	96.780	ENSMMUG00000019746	YARS	100	96.780	Macaca_mulatta
ENSMUSG00000028811	Yars	94	89.603	ENSMNEG00000031865	YARS	100	89.603	Macaca_nemestrina
ENSMUSG00000028811	Yars	94	96.212	ENSMLEG00000041315	YARS	100	96.212	Mandrillus_leucophaeus
ENSMUSG00000028811	Yars	94	78.947	ENSMAMG00000006092	yars	100	79.135	Mastacembelus_armatus
ENSMUSG00000028811	Yars	94	77.486	ENSMZEG00005011426	yars	100	77.674	Maylandia_zebra
ENSMUSG00000028811	Yars	93	86.973	ENSMGAG00000005063	YARS	99	86.973	Meleagris_gallopavo
ENSMUSG00000028811	Yars	91	98.051	ENSMAUG00000021126	Yars	99	98.051	Mesocricetus_auratus
ENSMUSG00000028811	Yars	95	95.872	ENSMICG00000011204	YARS	100	96.212	Microcebus_murinus
ENSMUSG00000028811	Yars	100	96.277	ENSMOCG00000011342	Yars	100	96.277	Microtus_ochrogaster
ENSMUSG00000028811	Yars	94	75.379	ENSMMOG00000021133	yars	100	75.379	Mola_mola
ENSMUSG00000028811	Yars	94	92.045	ENSMODG00000017404	YARS	100	92.045	Monodelphis_domestica
ENSMUSG00000028811	Yars	58	84.498	ENSMALG00000003648	yars	90	84.498	Monopterus_albus
ENSMUSG00000028811	Yars	100	99.291	MGP_CAROLIEiJ_G0026513	Yars	100	99.291	Mus_caroli
ENSMUSG00000028811	Yars	100	98.404	MGP_PahariEiJ_G0028844	Yars	100	98.404	Mus_pahari
ENSMUSG00000028811	Yars	100	99.645	MGP_SPRETEiJ_G0027493	Yars	100	99.645	Mus_spretus
ENSMUSG00000028811	Yars	94	95.833	ENSMLUG00000000759	YARS	100	95.833	Myotis_lucifugus
ENSMUSG00000028811	Yars	92	94.412	ENSNGAG00000001419	Yars	100	95.874	Nannospalax_galili
ENSMUSG00000028811	Yars	94	79.167	ENSNBRG00000020413	yars	100	79.167	Neolamprologus_brichardi
ENSMUSG00000028811	Yars	100	93.972	ENSNLEG00000002922	YARS	100	96.780	Nomascus_leucogenys
ENSMUSG00000028811	Yars	70	90.588	ENSMEUG00000011824	-	75	90.588	Notamacropus_eugenii
ENSMUSG00000028811	Yars	94	90.909	ENSOPRG00000003669	YARS	100	90.909	Ochotona_princeps
ENSMUSG00000028811	Yars	100	93.794	ENSODEG00000005363	YARS	100	93.794	Octodon_degus
ENSMUSG00000028811	Yars	94	78.131	ENSONIG00000015400	yars	100	78.318	Oreochromis_niloticus
ENSMUSG00000028811	Yars	87	83.669	ENSOANG00000011779	YARS	99	83.838	Ornithorhynchus_anatinus
ENSMUSG00000028811	Yars	94	96.780	ENSOCUG00000010007	YARS	100	96.780	Oryctolagus_cuniculus
ENSMUSG00000028811	Yars	92	78.857	ENSORLG00000013982	yars	96	78.857	Oryzias_latipes
ENSMUSG00000028811	Yars	94	78.908	ENSORLG00020020750	yars	100	79.284	Oryzias_latipes_hni
ENSMUSG00000028811	Yars	94	78.612	ENSORLG00015008963	yars	100	79.174	Oryzias_latipes_hsok
ENSMUSG00000028811	Yars	94	79.661	ENSOMEG00000013016	yars	95	88.889	Oryzias_melastigma
ENSMUSG00000028811	Yars	94	96.023	ENSOGAG00000007359	YARS	100	96.023	Otolemur_garnettii
ENSMUSG00000028811	Yars	99	93.036	ENSOARG00000020897	YARS	95	94.424	Ovis_aries
ENSMUSG00000028811	Yars	100	93.794	ENSPPAG00000035791	YARS	99	95.038	Pan_paniscus
ENSMUSG00000028811	Yars	94	95.455	ENSPPRG00000023768	YARS	100	95.455	Panthera_pardus
ENSMUSG00000028811	Yars	94	95.455	ENSPTIG00000003438	YARS	100	95.455	Panthera_tigris_altaica
ENSMUSG00000028811	Yars	100	93.794	ENSPTRG00000000491	YARS	100	96.780	Pan_troglodytes
ENSMUSG00000028811	Yars	94	96.591	ENSPANG00000009804	YARS	100	96.591	Papio_anubis
ENSMUSG00000028811	Yars	94	82.008	ENSPKIG00000024596	yars	100	82.008	Paramormyrops_kingsleyae
ENSMUSG00000028811	Yars	94	75.472	ENSPSIG00000006945	YARS	100	75.472	Pelodiscus_sinensis
ENSMUSG00000028811	Yars	94	78.030	ENSPMGG00000022917	yars	100	78.030	Periophthalmus_magnuspinnatus
ENSMUSG00000028811	Yars	100	95.745	ENSPEMG00000010746	Yars	100	95.745	Peromyscus_maniculatus_bairdii
ENSMUSG00000028811	Yars	93	92.600	ENSPCIG00000022457	YARS	99	92.600	Phascolarctos_cinereus
ENSMUSG00000028811	Yars	94	78.383	ENSPFOG00000014808	yars	100	78.947	Poecilia_formosa
ENSMUSG00000028811	Yars	94	78.571	ENSPLAG00000020075	yars	100	79.135	Poecilia_latipinna
ENSMUSG00000028811	Yars	94	78.383	ENSPMEG00000002803	yars	100	78.947	Poecilia_mexicana
ENSMUSG00000028811	Yars	94	78.977	ENSPREG00000018280	yars	100	79.167	Poecilia_reticulata
ENSMUSG00000028811	Yars	94	94.539	ENSPPYG00000001585	YARS	100	94.539	Pongo_abelii
ENSMUSG00000028811	Yars	76	96.552	ENSPCAG00000011170	YARS	81	96.552	Procavia_capensis
ENSMUSG00000028811	Yars	94	96.023	ENSPCOG00000021026	YARS	100	96.023	Propithecus_coquereli
ENSMUSG00000028811	Yars	94	95.644	ENSPVAG00000010984	YARS	100	95.644	Pteropus_vampyrus
ENSMUSG00000028811	Yars	94	78.598	ENSPNYG00000000860	yars	100	78.598	Pundamilia_nyererei
ENSMUSG00000028811	Yars	94	81.285	ENSPNAG00000009622	yars	100	81.285	Pygocentrus_nattereri
ENSMUSG00000028811	Yars	100	97.518	ENSRNOG00000007213	Yars	100	97.518	Rattus_norvegicus
ENSMUSG00000028811	Yars	50	81.071	ENSRBIG00000044271	-	84	81.071	Rhinopithecus_bieti
ENSMUSG00000028811	Yars	94	96.591	ENSRROG00000039913	YARS	100	96.591	Rhinopithecus_roxellana
ENSMUSG00000028811	Yars	94	96.591	ENSSBOG00000030205	YARS	100	96.591	Saimiri_boliviensis_boliviensis
ENSMUSG00000028811	Yars	94	91.098	ENSSHAG00000011851	YARS	100	91.098	Sarcophilus_harrisii
ENSMUSG00000028811	Yars	94	82.197	ENSSFOG00015007179	yars	100	82.197	Scleropages_formosus
ENSMUSG00000028811	Yars	94	76.515	ENSSMAG00000020736	yars	100	76.515	Scophthalmus_maximus
ENSMUSG00000028811	Yars	94	79.434	ENSSDUG00000001782	yars	100	79.623	Seriola_dumerili
ENSMUSG00000028811	Yars	94	80.303	ENSSLDG00000008268	yars	100	80.303	Seriola_lalandi_dorsalis
ENSMUSG00000028811	Yars	80	83.150	ENSSARG00000012227	-	86	83.150	Sorex_araneus
ENSMUSG00000028811	Yars	94	87.311	ENSSPUG00000000333	YARS	100	87.311	Sphenodon_punctatus
ENSMUSG00000028811	Yars	94	78.277	ENSSPAG00000020632	yars	100	75.283	Stegastes_partitus
ENSMUSG00000028811	Yars	94	96.212	ENSSSCG00000030369	YARS	100	96.212	Sus_scrofa
ENSMUSG00000028811	Yars	94	88.068	ENSTGUG00000001342	YARS	100	88.068	Taeniopygia_guttata
ENSMUSG00000028811	Yars	93	80.534	ENSTRUG00000014099	yars	99	80.534	Takifugu_rubripes
ENSMUSG00000028811	Yars	93	79.127	ENSTNIG00000009237	yars	99	79.127	Tetraodon_nigroviridis
ENSMUSG00000028811	Yars	90	84.283	ENSTBEG00000014374	YARS	100	84.283	Tupaia_belangeri
ENSMUSG00000028811	Yars	94	94.886	ENSTTRG00000014987	YARS	100	94.886	Tursiops_truncatus
ENSMUSG00000028811	Yars	100	90.265	ENSUAMG00000000392	YARS	100	90.619	Ursus_americanus
ENSMUSG00000028811	Yars	100	84.929	ENSUMAG00000008312	YARS	100	84.929	Ursus_maritimus
ENSMUSG00000028811	Yars	94	83.176	ENSVPAG00000010958	YARS	100	83.176	Vicugna_pacos
ENSMUSG00000028811	Yars	100	95.035	ENSVVUG00000015468	YARS	99	96.477	Vulpes_vulpes
ENSMUSG00000028811	Yars	94	80.114	ENSXETG00000027865	yars	100	80.114	Xenopus_tropicalis
ENSMUSG00000028811	Yars	90	77.930	ENSXMAG00000016348	yars	83	78.516	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004831	tyrosine-tRNA ligase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006412	translation	-	IEA	Process
GO:0006418	tRNA aminoacylation for protein translation	21873635.	IBA	Process
GO:0006437	tyrosyl-tRNA aminoacylation	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0016874	ligase activity	-	IEA	Function
GO:0017101	aminoacyl-tRNA synthetase multienzyme complex	21873635.	IBA	Component
GO:0017102	methionyl glutamyl tRNA synthetase complex	21873635.	IBA	Component