EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028820 (Gene tree)
Gene ID
71514
Gene Symbol
Sfpq
Alias
1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|D4Ertd314e|PSF|REP1
Full Name
splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
15690 bases
Position
chr4:127021324-127037013
Accession
1918764
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000030623RRM_1PF00076.227.6e-3012
ENSMUSP00000030623RRM_1PF00076.227.6e-3022
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000140682-755--- (aa)--
ENSMUST00000030623-3465XM_006503406ENSMUSP00000030623699 (aa)XP_006503469Q8VIJ6
ENSMUST00000125453-644--- (aa)--
ENSMUST00000144630-600--- (aa)--
ENSMUST00000146285-925NR_045010-- (aa)--
ENSMUST00000143168-967--- (aa)--
Gene Model
Click here to download ENSMUSG00000028820's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028820's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000028820Sfpq5565.891ENSMUSG00000021938Pspc18371.429
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028820Sfpq6998.347ENSG00000116560SFPQ9799.074Homo_sapiens
ENSMUSG00000028820Sfpq6274.596ENSAPOG00000024257sfpq6275.000Acanthochromis_polyacanthus
ENSMUSG00000028820Sfpq6399.318ENSAMEG00000000815SFPQ10099.318Ailuropoda_melanoleuca
ENSMUSG00000028820Sfpq8061.348ENSACIG00000000905sfpq7865.618Amphilophus_citrinellus
ENSMUSG00000028820Sfpq6274.246ENSAOCG00000002889sfpq6074.312Amphiprion_ocellaris
ENSMUSG00000028820Sfpq6274.246ENSAPEG00000016556sfpq6074.312Amphiprion_percula
ENSMUSG00000028820Sfpq6673.763ENSATEG00000002981sfpq6776.082Anabas_testudineus
ENSMUSG00000028820Sfpq5076.000ENSANAG00000037798-9975.714Aotus_nancymaae
ENSMUSG00000028820Sfpq5075.141ENSANAG00000021268-10074.074Aotus_nancymaae
ENSMUSG00000028820Sfpq9296.154ENSANAG00000027438-6882.766Aotus_nancymaae
ENSMUSG00000028820Sfpq6369.977ENSAMXG00000011538sfpq6572.500Astyanax_mexicanus
ENSMUSG00000028820Sfpq6998.347ENSBTAG00000016328SFPQ6898.954Bos_taurus
ENSMUSG00000028820Sfpq6998.140ENSCJAG00000001431SFPQ6898.745Callithrix_jacchus
ENSMUSG00000028820Sfpq8395.697ENSCAFG00000003595-7398.745Canis_familiaris
ENSMUSG00000028820Sfpq8584.333ENSCAFG00000018271-6692.744Canis_familiaris
ENSMUSG00000028820Sfpq8581.135ENSCAFG00000017608-6592.517Canis_familiaris
ENSMUSG00000028820Sfpq8584.193ENSCAFG00020004881-6692.744Canis_lupus_dingo
ENSMUSG00000028820Sfpq5090.598ENSCAFG00020010702-10090.598Canis_lupus_dingo
ENSMUSG00000028820Sfpq6998.347ENSCHIG00000023097SFPQ6798.954Capra_hircus
ENSMUSG00000028820Sfpq5085.100ENSTSYG00000035106-9885.100Carlito_syrichta
ENSMUSG00000028820Sfpq5099.430ENSTSYG00000037120-10099.430Carlito_syrichta
ENSMUSG00000028820Sfpq5090.883ENSCPOG00000015018-10088.981Cavia_porcellus
ENSMUSG00000028820Sfpq6997.934ENSCCAG00000029361-6898.536Cebus_capucinus
ENSMUSG00000028820Sfpq6194.811ENSCATG00000036179-6195.923Cercocebus_atys
ENSMUSG00000028820Sfpq6972.301ENSCATG00000032664-6672.934Cercocebus_atys
ENSMUSG00000028820Sfpq5099.430ENSCLAG00000009583-10099.430Chinchilla_lanigera
ENSMUSG00000028820Sfpq6998.347ENSCSAG00000001082SFPQ6898.954Chlorocebus_sabaeus
ENSMUSG00000028820Sfpq5494.737ENSCHOG00000009131SFPQ10094.737Choloepus_hoffmanni
ENSMUSG00000028820Sfpq6393.213ENSCPBG00000018674SFPQ6992.568Chrysemys_picta_bellii
ENSMUSG00000028820Sfpq5099.430ENSCANG00000028087-10099.430Colobus_angolensis_palliatus
ENSMUSG00000028820Sfpq10097.866ENSCGRG00001011698Sfpq10097.866Cricetulus_griseus_chok1gshd
ENSMUSG00000028820Sfpq62100.000ENSCGRG00000010128Sfpq95100.000Cricetulus_griseus_crigri
ENSMUSG00000028820Sfpq6274.600ENSCSEG00000007852sfpq6673.165Cynoglossus_semilaevis
ENSMUSG00000028820Sfpq6170.023ENSCVAG00000019538sfpq6467.371Cyprinodon_variegatus
ENSMUSG00000028820Sfpq6371.526ENSDARG00000011564sfpq10083.478Danio_rerio
ENSMUSG00000028820Sfpq6997.934ENSDNOG00000049454SFPQ8495.142Dasypus_novemcinctus
ENSMUSG00000028820Sfpq6998.347ENSDORG00000008109Sfpq8595.980Dipodomys_ordii
ENSMUSG00000028820Sfpq6292.575ENSETEG00000001095SFPQ6192.575Echinops_telfairi
ENSMUSG00000028820Sfpq6272.917ENSELUG00000023145sfpq6671.694Esox_lucius
ENSMUSG00000028820Sfpq8595.645ENSFCAG00000042862SFPQ8595.645Felis_catus
ENSMUSG00000028820Sfpq5094.587ENSFALG00000000731SFPQ10094.587Ficedula_albicollis
ENSMUSG00000028820Sfpq5090.313ENSFDAG00000017723-10090.652Fukomys_damarensis
ENSMUSG00000028820Sfpq6267.126ENSFHEG00000015200sfpq5668.736Fundulus_heteroclitus
ENSMUSG00000028820Sfpq6868.399ENSGMOG00000011957sfpq6573.782Gadus_morhua
ENSMUSG00000028820Sfpq6274.943ENSGMOG00000011950SFPQ7475.000Gadus_morhua
ENSMUSG00000028820Sfpq6394.292ENSGALG00000002514SFPQ6894.292Gallus_gallus
ENSMUSG00000028820Sfpq9053.251ENSGAFG00000014571sfpq5777.607Gambusia_affinis
ENSMUSG00000028820Sfpq8062.248ENSGACG00000002034sfpq6874.654Gasterosteus_aculeatus
ENSMUSG00000028820Sfpq7599.076ENSGGOG00000026354SFPQ10099.430Gorilla_gorilla
ENSMUSG00000028820Sfpq6898.129ENSHGLG00000012001SFPQ8691.500Heterocephalus_glaber_female
ENSMUSG00000028820Sfpq5099.430ENSHGLG00100004136-10099.430Heterocephalus_glaber_male
ENSMUSG00000028820Sfpq6472.991ENSHCOG00000008612sfpq7068.372Hippocampus_comes
ENSMUSG00000028820Sfpq6569.248ENSIPUG00000013076SFPQ7372.540Ictalurus_punctatus
ENSMUSG00000028820Sfpq5099.430ENSSTOG00000014004-10099.430Ictidomys_tridecemlineatus
ENSMUSG00000028820Sfpq6998.554ENSJJAG00000015633Sfpq6898.745Jaculus_jaculus
ENSMUSG00000028820Sfpq6269.725ENSKMAG00000000238sfpq5471.034Kryptolebias_marmoratus
ENSMUSG00000028820Sfpq6276.256ENSLACG00000014728SFPQ7080.324Latimeria_chalumnae
ENSMUSG00000028820Sfpq9062.096ENSLOCG00000001067sfpq6881.912Lepisosteus_oculatus
ENSMUSG00000028820Sfpq9787.001ENSLAFG00000015951SFPQ8595.142Loxodonta_africana
ENSMUSG00000028820Sfpq6998.140ENSMFAG00000000797SFPQ6898.745Macaca_fascicularis
ENSMUSG00000028820Sfpq6998.140ENSMMUG00000019154SFPQ6898.745Macaca_mulatta
ENSMUSG00000028820Sfpq6998.347ENSMNEG00000038895SFPQ6898.954Macaca_nemestrina
ENSMUSG00000028820Sfpq5096.296ENSMLEG00000010643-10096.296Mandrillus_leucophaeus
ENSMUSG00000028820Sfpq7866.727ENSMAMG00000007875sfpq6677.726Mastacembelus_armatus
ENSMUSG00000028820Sfpq5491.049ENSMGAG00000004237SFPQ10091.049Meleagris_gallopavo
ENSMUSG00000028820Sfpq10097.866ENSMAUG00000006402Sfpq10097.866Mesocricetus_auratus
ENSMUSG00000028820Sfpq6998.347ENSMICG00000027265SFPQ6898.954Microcebus_murinus
ENSMUSG00000028820Sfpq6995.652ENSMOCG00000019075Sfpq10095.652Microtus_ochrogaster
ENSMUSG00000028820Sfpq8064.134ENSMMOG00000001074sfpq6574.651Mola_mola
ENSMUSG00000028820Sfpq6495.291ENSMODG00000017937SFPQ7293.595Monodelphis_domestica
ENSMUSG00000028820Sfpq6275.116ENSMALG00000010381sfpq6475.584Monopterus_albus
ENSMUSG00000028820Sfpq10099.857MGP_CAROLIEiJ_G0026487Sfpq10099.857Mus_caroli
ENSMUSG00000028820Sfpq10099.142MGP_PahariEiJ_G0028818Sfpq10099.142Mus_pahari
ENSMUSG00000028820Sfpq100100.000MGP_SPRETEiJ_G0027466Sfpq100100.000Mus_spretus
ENSMUSG00000028820Sfpq6496.444ENSMLUG00000027090SFPQ10096.444Myotis_lucifugus
ENSMUSG00000028820Sfpq6998.557ENSNGAG00000000888Sfpq6898.956Nannospalax_galili
ENSMUSG00000028820Sfpq9057.845ENSNBRG00000017479sfpq6473.077Neolamprologus_brichardi
ENSMUSG00000028820Sfpq5099.430ENSNLEG00000035521-10099.430Nomascus_leucogenys
ENSMUSG00000028820Sfpq6695.900ENSMEUG00000014082SFPQ6395.238Notamacropus_eugenii
ENSMUSG00000028820Sfpq7393.294ENSOPRG00000013696SFPQ6896.234Ochotona_princeps
ENSMUSG00000028820Sfpq6687.013ENSODEG00000005485SFPQ8586.422Octodon_degus
ENSMUSG00000028820Sfpq6373.423ENSONIG00000017737sfpq5779.781Oreochromis_niloticus
ENSMUSG00000028820Sfpq5096.866ENSOANG00000008789-10096.866Ornithorhynchus_anatinus
ENSMUSG00000028820Sfpq7389.443ENSOCUG00000001877SFPQ9294.167Oryctolagus_cuniculus
ENSMUSG00000028820Sfpq7265.029ENSORLG00000007459sfpq5771.694Oryzias_latipes
ENSMUSG00000028820Sfpq8256.825ENSORLG00020011818sfpq5771.694Oryzias_latipes_hni
ENSMUSG00000028820Sfpq7264.775ENSORLG00015002131sfpq5871.034Oryzias_latipes_hsok
ENSMUSG00000028820Sfpq9952.493ENSOMEG00000018020sfpq5870.295Oryzias_melastigma
ENSMUSG00000028820Sfpq7696.597ENSOGAG00000027710SFPQ10096.597Otolemur_garnettii
ENSMUSG00000028820Sfpq7499.306ENSOARG00000019439SFPQ8099.306Ovis_aries
ENSMUSG00000028820Sfpq5099.148ENSPPRG00000015478-10099.148Panthera_pardus
ENSMUSG00000028820Sfpq5099.430ENSPTIG00000007710-10099.430Panthera_tigris_altaica
ENSMUSG00000028820Sfpq6992.149ENSPTRG00000000518SFPQ6692.678Pan_troglodytes
ENSMUSG00000028820Sfpq7866.117ENSPKIG00000023035sfpq7379.493Paramormyrops_kingsleyae
ENSMUSG00000028820Sfpq6294.664ENSPSIG00000011494SFPQ10094.664Pelodiscus_sinensis
ENSMUSG00000028820Sfpq6169.249ENSPMGG00000023883sfpq5881.424Periophthalmus_magnuspinnatus
ENSMUSG00000028820Sfpq6799.151ENSPEMG00000009794Sfpq9799.151Peromyscus_maniculatus_bairdii
ENSMUSG00000028820Sfpq6495.516ENSPCIG00000000923SFPQ6993.595Phascolarctos_cinereus
ENSMUSG00000028820Sfpq8655.803ENSPFOG00000003127sfpq7168.360Poecilia_formosa
ENSMUSG00000028820Sfpq6998.347ENSPPYG00000001560SFPQ6898.954Pongo_abelii
ENSMUSG00000028820Sfpq7798.368ENSPCAG00000006164SFPQ7798.368Procavia_capensis
ENSMUSG00000028820Sfpq6998.347ENSPCOG00000027127SFPQ6898.954Propithecus_coquereli
ENSMUSG00000028820Sfpq9692.136ENSPVAG00000001865SFPQ8593.132Pteropus_vampyrus
ENSMUSG00000028820Sfpq6371.396ENSPNYG00000007494sfpq6272.624Pundamilia_nyererei
ENSMUSG00000028820Sfpq8758.497ENSPNAG00000002128sfpq7372.973Pygocentrus_nattereri
ENSMUSG00000028820Sfpq10097.282ENSRNOG00000058461Sfpq10097.282Rattus_norvegicus
ENSMUSG00000028820Sfpq9972.103ENSRBIG00000035286SFPQ10099.430Rhinopithecus_bieti
ENSMUSG00000028820Sfpq68100.000ENSRROG00000040992SFPQ10099.430Rhinopithecus_roxellana
ENSMUSG00000028820Sfpq5099.430ENSSBOG00000024972-10099.430Saimiri_boliviensis_boliviensis
ENSMUSG00000028820Sfpq5091.453ENSSHAG00000012312-10090.883Sarcophilus_harrisii
ENSMUSG00000028820Sfpq6290.869ENSSHAG00000016107-9790.200Sarcophilus_harrisii
ENSMUSG00000028820Sfpq7566.231ENSSFOG00015009289sfpq7977.778Scleropages_formosus
ENSMUSG00000028820Sfpq6277.083ENSSMAG00000018201sfpq6673.982Scophthalmus_maximus
ENSMUSG00000028820Sfpq6276.620ENSSDUG00000008402sfpq6578.291Seriola_dumerili
ENSMUSG00000028820Sfpq6276.620ENSSLDG00000018917sfpq6578.291Seriola_lalandi_dorsalis
ENSMUSG00000028820Sfpq5399.457ENSSARG00000006409SFPQ10099.457Sorex_araneus
ENSMUSG00000028820Sfpq8594.807ENSSSCG00000035690SFPQ9690.370Sus_scrofa
ENSMUSG00000028820Sfpq6294.896ENSTGUG00000001722SFPQ10094.896Taeniopygia_guttata
ENSMUSG00000028820Sfpq6275.402ENSTRUG00000003783sfpq6276.092Takifugu_rubripes
ENSMUSG00000028820Sfpq6376.484ENSTNIG00000011331sfpq7276.027Tetraodon_nigroviridis
ENSMUSG00000028820Sfpq6987.009ENSTBEG00000006238SFPQ7972.673Tupaia_belangeri
ENSMUSG00000028820Sfpq8590.787ENSTTRG00000013930SFPQ8591.792Tursiops_truncatus
ENSMUSG00000028820Sfpq5098.374ENSUAMG00000026758SFPQ8598.374Ursus_americanus
ENSMUSG00000028820Sfpq5096.581ENSUMAG00000008056-10096.581Ursus_maritimus
ENSMUSG00000028820Sfpq6488.964ENSVPAG00000006960-6788.964Vicugna_pacos
ENSMUSG00000028820Sfpq5088.319ENSVVUG00000000874-10088.319Vulpes_vulpes
ENSMUSG00000028820Sfpq6579.957ENSXETG00000009682sfpq10084.830Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II-ISOProcess
GO:0000380alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000380alternative mRNA splicing, via spliceosome-ISOProcess
GO:0000724double-strand break repair via homologous recombination20813759.ISOProcess
GO:0000785chromatin-ISOComponent
GO:0000976transcription regulatory region sequence-specific DNA binding21873635.IBAFunction
GO:0000976transcription regulatory region sequence-specific DNA binding21680841.IDAFunction
GO:0000980RNA polymerase II distal enhancer sequence-specific DNA binding19389484.IDAFunction
GO:0002218activation of innate immune response-ISOProcess
GO:0002376immune system process-IEAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-ISOFunction
GO:0003682chromatin binding19389484.IDAFunction
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding18495661.19144721.20813759.21177649.21680841.22966205.23055941.23308148.23863478.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0006281DNA repair-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0006974cellular response to DNA damage stimulus20813759.IMPProcess
GO:0008380RNA splicing-IEAProcess
GO:0016363nuclear matrix-ISOComponent
GO:0042382paraspeckles21444682.IDAComponent
GO:0042382paraspeckles-ISOComponent
GO:0042752regulation of circadian rhythm22966205.IMPProcess
GO:0042754negative regulation of circadian rhythm21680841.IMPProcess
GO:0042803protein homodimerization activity-ISOFunction
GO:0042826histone deacetylase binding-ISOFunction
GO:0044212transcription regulatory region DNA binding-ISOFunction
GO:0045087innate immune response-IEAProcess
GO:0045876positive regulation of sister chromatid cohesion20813759.IMPProcess
GO:0045892negative regulation of transcription, DNA-templated22966205.IDAProcess
GO:0045892negative regulation of transcription, DNA-templated21680841.IMPProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0048511rhythmic process-IEAProcess
GO:0051276chromosome organization20813759.IMPProcess
GO:0051726regulation of cell cycle20813759.IMPProcess
GO:0070888E-box binding22966205.IDAFunction
GO:0070932histone H3 deacetylation21680841.IMPProcess
GO:0090575RNA polymerase II transcription factor complex19389484.IDAComponent
GO:0098963dendritic transport of messenger ribonucleoprotein complex15312650.IDAProcess
GO:0098963dendritic transport of messenger ribonucleoprotein complex15312650.IMPProcess
GO:1902177positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway-ISOProcess

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