EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028840 (Gene tree)
Gene ID: 68040
Gene Symbol: Zfp593
Alias: 3110024A21Rik|E130106C14Rik
Full Name: zinc finger protein 593
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 2304 bases
Position: chr4:134243289-134245592
Accession: 1915290
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000030644	zf-C2H2_jaz	PF12171.8	2.2e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000030644	-	1994	-	ENSMUSP00000030644	134 (aa)	-	Q9DB42
ENSMUST00000129183	-	2020	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000028840's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028840's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028840	Zfp593	100	90.299	ENSG00000142684	ZNF593	100	90.299	Homo_sapiens
ENSMUSG00000028840	Zfp593	91	48.000	ENSAPOG00000014046	znf593	86	48.000	Acanthochromis_polyacanthus
ENSMUSG00000028840	Zfp593	99	87.218	ENSAMEG00000010410	ZNF593	98	87.218	Ailuropoda_melanoleuca
ENSMUSG00000028840	Zfp593	91	48.000	ENSACIG00000004744	znf593	95	48.000	Amphilophus_citrinellus
ENSMUSG00000028840	Zfp593	91	48.000	ENSAOCG00000014030	znf593	95	48.000	Amphiprion_ocellaris
ENSMUSG00000028840	Zfp593	91	48.000	ENSAPEG00000018888	znf593	95	48.000	Amphiprion_percula
ENSMUSG00000028840	Zfp593	92	49.206	ENSATEG00000012876	znf593	95	49.206	Anabas_testudineus
ENSMUSG00000028840	Zfp593	93	60.000	ENSACAG00000017787	ZNF593	94	60.000	Anolis_carolinensis
ENSMUSG00000028840	Zfp593	100	91.045	ENSANAG00000034118	ZNF593	100	91.045	Aotus_nancymaae
ENSMUSG00000028840	Zfp593	91	48.000	ENSACLG00000016796	znf593	95	48.000	Astatotilapia_calliptera
ENSMUSG00000028840	Zfp593	91	45.600	ENSAMXG00000039647	znf593	95	45.600	Astyanax_mexicanus
ENSMUSG00000028840	Zfp593	100	91.045	ENSBTAG00000009562	ZNF593	100	91.045	Bos_taurus
ENSMUSG00000028840	Zfp593	78	36.449	WBGene00013236	Y56A3A.18	79	36.449	Caenorhabditis_elegans
ENSMUSG00000028840	Zfp593	100	88.060	ENSCJAG00000009624	ZNF593	100	88.060	Callithrix_jacchus
ENSMUSG00000028840	Zfp593	99	85.714	ENSCAFG00000030699	ZNF593	73	85.714	Canis_familiaris
ENSMUSG00000028840	Zfp593	99	85.714	ENSCAFG00020021225	ZNF593	97	85.714	Canis_lupus_dingo
ENSMUSG00000028840	Zfp593	100	91.045	ENSCHIG00000011277	ZNF593	100	91.045	Capra_hircus
ENSMUSG00000028840	Zfp593	63	94.048	ENSTSYG00000031897	ZNF593	79	94.048	Carlito_syrichta
ENSMUSG00000028840	Zfp593	100	91.045	ENSCPOG00000035949	ZNF593	100	91.045	Cavia_porcellus
ENSMUSG00000028840	Zfp593	100	91.045	ENSCATG00000015417	-	100	91.045	Cercocebus_atys
ENSMUSG00000028840	Zfp593	100	92.537	ENSCLAG00000011066	ZNF593	100	92.537	Chinchilla_lanigera
ENSMUSG00000028840	Zfp593	100	91.045	ENSCSAG00000000966	ZNF593	100	91.045	Chlorocebus_sabaeus
ENSMUSG00000028840	Zfp593	69	83.696	ENSCHOG00000004944	ZNF593	59	83.696	Choloepus_hoffmanni
ENSMUSG00000028840	Zfp593	89	61.345	ENSCPBG00000025034	ZNF593	90	61.345	Chrysemys_picta_bellii
ENSMUSG00000028840	Zfp593	100	83.582	ENSCANG00000029027	ZNF593	100	83.582	Colobus_angolensis_palliatus
ENSMUSG00000028840	Zfp593	100	94.776	ENSCGRG00001010679	Zfp593	100	94.776	Cricetulus_griseus_chok1gshd
ENSMUSG00000028840	Zfp593	100	94.776	ENSCGRG00000014971	Zfp593	100	94.776	Cricetulus_griseus_crigri
ENSMUSG00000028840	Zfp593	90	49.587	ENSCSEG00000002614	znf593	94	49.587	Cynoglossus_semilaevis
ENSMUSG00000028840	Zfp593	91	47.200	ENSCVAG00000020798	znf593	95	47.200	Cyprinodon_variegatus
ENSMUSG00000028840	Zfp593	91	48.800	ENSDARG00000044102	znf593	95	48.800	Danio_rerio
ENSMUSG00000028840	Zfp593	99	87.218	ENSDNOG00000034363	ZNF593	98	87.218	Dasypus_novemcinctus
ENSMUSG00000028840	Zfp593	100	86.567	ENSDORG00000028366	Zfp593	100	86.567	Dipodomys_ordii
ENSMUSG00000028840	Zfp593	53	53.521	FBgn0029885	CG3224	72	42.500	Drosophila_melanogaster
ENSMUSG00000028840	Zfp593	100	91.045	ENSETEG00000019920	ZNF593	100	91.045	Echinops_telfairi
ENSMUSG00000028840	Zfp593	100	90.299	ENSEASG00005004029	ZNF593	100	90.299	Equus_asinus_asinus
ENSMUSG00000028840	Zfp593	100	90.299	ENSECAG00000023934	ZNF593	100	90.299	Equus_caballus
ENSMUSG00000028840	Zfp593	100	89.552	ENSEEUG00000010536	ZNF593	100	89.552	Erinaceus_europaeus
ENSMUSG00000028840	Zfp593	91	44.800	ENSELUG00000014408	znf593	95	44.800	Esox_lucius
ENSMUSG00000028840	Zfp593	99	86.466	ENSFCAG00000023239	ZNF593	99	86.466	Felis_catus
ENSMUSG00000028840	Zfp593	100	89.552	ENSFDAG00000013333	ZNF593	100	89.552	Fukomys_damarensis
ENSMUSG00000028840	Zfp593	91	48.000	ENSFHEG00000004200	znf593	95	48.000	Fundulus_heteroclitus
ENSMUSG00000028840	Zfp593	91	45.600	ENSGMOG00000010720	znf593	94	45.600	Gadus_morhua
ENSMUSG00000028840	Zfp593	98	61.832	ENSGALG00000000542	ZNF593	96	61.832	Gallus_gallus
ENSMUSG00000028840	Zfp593	91	48.000	ENSGAFG00000007635	znf593	95	48.000	Gambusia_affinis
ENSMUSG00000028840	Zfp593	91	46.400	ENSGACG00000009279	znf593	95	46.400	Gasterosteus_aculeatus
ENSMUSG00000028840	Zfp593	89	61.345	ENSGAGG00000000323	ZNF593	90	61.345	Gopherus_agassizii
ENSMUSG00000028840	Zfp593	100	90.299	ENSGGOG00000006573	ZNF593	100	90.299	Gorilla_gorilla
ENSMUSG00000028840	Zfp593	91	48.000	ENSHBUG00000023229	znf593	95	48.000	Haplochromis_burtoni
ENSMUSG00000028840	Zfp593	100	88.060	ENSHGLG00000011938	ZNF593	100	88.060	Heterocephalus_glaber_female
ENSMUSG00000028840	Zfp593	100	88.060	ENSHGLG00100016960	ZNF593	100	88.060	Heterocephalus_glaber_male
ENSMUSG00000028840	Zfp593	91	48.000	ENSHCOG00000007954	znf593	95	48.000	Hippocampus_comes
ENSMUSG00000028840	Zfp593	95	48.092	ENSIPUG00000015389	znf593	99	48.092	Ictalurus_punctatus
ENSMUSG00000028840	Zfp593	100	85.821	ENSSTOG00000022153	ZNF593	100	85.821	Ictidomys_tridecemlineatus
ENSMUSG00000028840	Zfp593	100	91.791	ENSJJAG00000006095	Zfp593	100	91.791	Jaculus_jaculus
ENSMUSG00000028840	Zfp593	91	48.000	ENSKMAG00000008952	znf593	95	48.000	Kryptolebias_marmoratus
ENSMUSG00000028840	Zfp593	92	46.825	ENSLBEG00000005765	znf593	95	46.825	Labrus_bergylta
ENSMUSG00000028840	Zfp593	91	46.400	ENSLACG00000004262	znf593	95	46.400	Latimeria_chalumnae
ENSMUSG00000028840	Zfp593	91	47.200	ENSLOCG00000004338	znf593	95	47.200	Lepisosteus_oculatus
ENSMUSG00000028840	Zfp593	99	92.481	ENSLAFG00000022048	ZNF593	100	92.481	Loxodonta_africana
ENSMUSG00000028840	Zfp593	100	87.313	ENSMFAG00000025982	-	77	87.313	Macaca_fascicularis
ENSMUSG00000028840	Zfp593	100	91.791	ENSMFAG00000044001	-	100	91.791	Macaca_fascicularis
ENSMUSG00000028840	Zfp593	100	87.313	ENSMMUG00000030530	-	77	87.313	Macaca_mulatta
ENSMUSG00000028840	Zfp593	76	77.679	ENSMMUG00000004682	ZNF593	77	77.679	Macaca_mulatta
ENSMUSG00000028840	Zfp593	100	91.791	ENSMNEG00000028267	ZNF593	100	91.791	Macaca_nemestrina
ENSMUSG00000028840	Zfp593	100	90.299	ENSMLEG00000035715	ZNF593	100	90.299	Mandrillus_leucophaeus
ENSMUSG00000028840	Zfp593	91	45.600	ENSMAMG00000007484	znf593	95	45.600	Mastacembelus_armatus
ENSMUSG00000028840	Zfp593	91	48.000	ENSMZEG00005005052	znf593	95	48.000	Maylandia_zebra
ENSMUSG00000028840	Zfp593	100	96.269	ENSMAUG00000022183	Zfp593	100	96.269	Mesocricetus_auratus
ENSMUSG00000028840	Zfp593	100	88.806	ENSMICG00000017472	ZNF593	100	88.806	Microcebus_murinus
ENSMUSG00000028840	Zfp593	100	94.776	ENSMOCG00000013349	Zfp593	100	94.776	Microtus_ochrogaster
ENSMUSG00000028840	Zfp593	91	50.000	ENSMMOG00000010269	znf593	94	50.000	Mola_mola
ENSMUSG00000028840	Zfp593	91	46.400	ENSMALG00000012702	znf593	95	46.400	Monopterus_albus
ENSMUSG00000028840	Zfp593	100	97.761	MGP_CAROLIEiJ_G0026613	Zfp593	100	97.761	Mus_caroli
ENSMUSG00000028840	Zfp593	100	98.507	MGP_PahariEiJ_G0028946	Zfp593	100	98.507	Mus_pahari
ENSMUSG00000028840	Zfp593	100	98.507	MGP_SPRETEiJ_G0027593	Zfp593	100	98.507	Mus_spretus
ENSMUSG00000028840	Zfp593	100	89.552	ENSMLUG00000010172	ZNF593	100	89.552	Myotis_lucifugus
ENSMUSG00000028840	Zfp593	100	90.299	ENSNGAG00000011656	Zfp593	100	90.299	Nannospalax_galili
ENSMUSG00000028840	Zfp593	91	48.000	ENSNBRG00000000263	znf593	95	48.000	Neolamprologus_brichardi
ENSMUSG00000028840	Zfp593	100	90.299	ENSNLEG00000009197	-	100	90.299	Nomascus_leucogenys
ENSMUSG00000028840	Zfp593	67	77.778	ENSMEUG00000012390	-	58	77.778	Notamacropus_eugenii
ENSMUSG00000028840	Zfp593	100	88.806	ENSOPRG00000001439	ZNF593	100	88.806	Ochotona_princeps
ENSMUSG00000028840	Zfp593	100	87.313	ENSODEG00000003869	ZNF593	100	87.313	Octodon_degus
ENSMUSG00000028840	Zfp593	91	48.000	ENSONIG00000003571	znf593	95	48.000	Oreochromis_niloticus
ENSMUSG00000028840	Zfp593	87	70.690	ENSOANG00000012304	ZNF593	87	71.901	Ornithorhynchus_anatinus
ENSMUSG00000028840	Zfp593	100	89.552	ENSOCUG00000013999	ZNF593	100	89.552	Oryctolagus_cuniculus
ENSMUSG00000028840	Zfp593	91	47.541	ENSORLG00000014641	znf593	94	47.541	Oryzias_latipes
ENSMUSG00000028840	Zfp593	91	47.541	ENSORLG00020012989	znf593	94	47.541	Oryzias_latipes_hni
ENSMUSG00000028840	Zfp593	91	47.541	ENSORLG00015011478	znf593	94	47.541	Oryzias_latipes_hsok
ENSMUSG00000028840	Zfp593	95	49.219	ENSOMEG00000010097	znf593	99	49.219	Oryzias_melastigma
ENSMUSG00000028840	Zfp593	100	89.552	ENSOGAG00000016334	-	99	89.552	Otolemur_garnettii
ENSMUSG00000028840	Zfp593	88	80.508	ENSOGAG00000024080	-	89	80.508	Otolemur_garnettii
ENSMUSG00000028840	Zfp593	100	81.343	ENSOARG00000005342	ZNF593	100	81.343	Ovis_aries
ENSMUSG00000028840	Zfp593	100	90.299	ENSPPAG00000030063	ZNF593	100	90.299	Pan_paniscus
ENSMUSG00000028840	Zfp593	99	86.466	ENSPPRG00000023304	ZNF593	99	86.466	Panthera_pardus
ENSMUSG00000028840	Zfp593	80	72.897	ENSPTIG00000015187	ZNF593	98	72.897	Panthera_tigris_altaica
ENSMUSG00000028840	Zfp593	100	90.299	ENSPTRG00000000375	ZNF593	100	90.299	Pan_troglodytes
ENSMUSG00000028840	Zfp593	100	87.770	ENSPANG00000034030	-	100	87.770	Papio_anubis
ENSMUSG00000028840	Zfp593	100	89.552	ENSPANG00000002484	-	100	89.552	Papio_anubis
ENSMUSG00000028840	Zfp593	91	49.600	ENSPKIG00000000619	znf593	95	49.600	Paramormyrops_kingsleyae
ENSMUSG00000028840	Zfp593	91	46.400	ENSPMGG00000010674	znf593	95	46.400	Periophthalmus_magnuspinnatus
ENSMUSG00000028840	Zfp593	100	97.015	ENSPEMG00000011884	Zfp593	100	97.015	Peromyscus_maniculatus_bairdii
ENSMUSG00000028840	Zfp593	100	75.373	ENSPCIG00000011911	ZNF593	100	75.373	Phascolarctos_cinereus
ENSMUSG00000028840	Zfp593	91	47.200	ENSPFOG00000013615	znf593	95	47.200	Poecilia_formosa
ENSMUSG00000028840	Zfp593	91	47.200	ENSPLAG00000016005	znf593	95	47.200	Poecilia_latipinna
ENSMUSG00000028840	Zfp593	91	47.200	ENSPMEG00000018232	znf593	95	47.200	Poecilia_mexicana
ENSMUSG00000028840	Zfp593	91	46.400	ENSPREG00000020251	znf593	95	46.400	Poecilia_reticulata
ENSMUSG00000028840	Zfp593	100	90.299	ENSPPYG00000001693	ZNF593	100	90.299	Pongo_abelii
ENSMUSG00000028840	Zfp593	66	81.818	ENSPCAG00000005336	ZNF593	56	81.818	Procavia_capensis
ENSMUSG00000028840	Zfp593	100	90.299	ENSPCOG00000016991	ZNF593	100	90.299	Propithecus_coquereli
ENSMUSG00000028840	Zfp593	66	92.045	ENSPVAG00000017253	ZNF593	58	92.045	Pteropus_vampyrus
ENSMUSG00000028840	Zfp593	91	48.000	ENSPNYG00000019886	znf593	95	48.000	Pundamilia_nyererei
ENSMUSG00000028840	Zfp593	91	46.400	ENSPNAG00000023494	znf593	95	46.400	Pygocentrus_nattereri
ENSMUSG00000028840	Zfp593	100	97.015	ENSRNOG00000016392	Zfp593	100	97.015	Rattus_norvegicus
ENSMUSG00000028840	Zfp593	100	91.045	ENSRBIG00000042051	ZNF593	100	91.045	Rhinopithecus_bieti
ENSMUSG00000028840	Zfp593	100	91.045	ENSRROG00000042522	ZNF593	100	91.045	Rhinopithecus_roxellana
ENSMUSG00000028840	Zfp593	70	36.842	YLR074C	-	55	36.842	Saccharomyces_cerevisiae
ENSMUSG00000028840	Zfp593	100	90.299	ENSSBOG00000030845	ZNF593	100	90.299	Saimiri_boliviensis_boliviensis
ENSMUSG00000028840	Zfp593	99	46.667	ENSSFOG00015002115	znf593	100	46.667	Scleropages_formosus
ENSMUSG00000028840	Zfp593	91	46.400	ENSSMAG00000020125	znf593	95	46.400	Scophthalmus_maximus
ENSMUSG00000028840	Zfp593	92	46.032	ENSSDUG00000017282	znf593	95	46.032	Seriola_dumerili
ENSMUSG00000028840	Zfp593	91	46.400	ENSSLDG00000002876	znf593	95	46.400	Seriola_lalandi_dorsalis
ENSMUSG00000028840	Zfp593	99	87.970	ENSSARG00000003139	-	99	87.970	Sorex_araneus
ENSMUSG00000028840	Zfp593	99	57.576	ENSSPUG00000010623	ZNF593	97	57.576	Sphenodon_punctatus
ENSMUSG00000028840	Zfp593	98	47.761	ENSSPAG00000022301	znf593	98	47.761	Stegastes_partitus
ENSMUSG00000028840	Zfp593	100	91.791	ENSSSCG00000036593	-	100	91.791	Sus_scrofa
ENSMUSG00000028840	Zfp593	95	57.480	ENSTGUG00000001050	ZNF593	93	57.480	Taeniopygia_guttata
ENSMUSG00000028840	Zfp593	91	50.400	ENSTRUG00000008269	znf593	95	50.400	Takifugu_rubripes
ENSMUSG00000028840	Zfp593	91	49.600	ENSTNIG00000017288	znf593	95	49.600	Tetraodon_nigroviridis
ENSMUSG00000028840	Zfp593	99	87.218	ENSUAMG00000007146	ZNF593	99	87.218	Ursus_americanus
ENSMUSG00000028840	Zfp593	69	86.957	ENSUMAG00000012751	ZNF593	97	86.957	Ursus_maritimus
ENSMUSG00000028840	Zfp593	99	86.466	ENSVVUG00000011698	ZNF593	97	86.466	Vulpes_vulpes
ENSMUSG00000028840	Zfp593	100	45.324	ENSXETG00000009189	znf593	100	45.324	Xenopus_tropicalis
ENSMUSG00000028840	Zfp593	91	48.000	ENSXCOG00000004628	znf593	95	48.000	Xiphophorus_couchianus
ENSMUSG00000028840	Zfp593	91	48.000	ENSXMAG00000007785	znf593	95	48.000	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000055	ribosomal large subunit export from nucleus	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0008270	zinc ion binding	-	ISO	Function
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0043023	ribosomal large subunit binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:1903026	negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Process