EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000028889 (Gene tree)
Gene ID: 230734
Gene Symbol: Yrdc
Alias: IRIP
Full Name: yrdC domain containing (E.coli)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 4564 bases
Position: chr4:124850679-124855242
Accession: 2387201
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000099688	Sua5_yciO_yrdC	PF01300.18	1.7e-43	1	1
ENSMUSP00000114150	Sua5_yciO_yrdC	PF01300.18	5.4e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000102628	-	1634	-	ENSMUSP00000099688	280 (aa)	-	Q3U5F4
ENSMUST00000173434	-	512	-	-	- (aa)	-	-
ENSMUST00000144851	-	724	-	ENSMUSP00000114150	105 (aa)	-	G8JL83

Gene Model

Click here to download ENSMUSG00000028889's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028889's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000028889	Yrdc	100	93.333	ENSG00000196449	YRDC	99	85.971	Homo_sapiens
ENSMUSG00000028889	Yrdc	99	70.192	ENSAPOG00000024293	yrdc	79	61.244	Acanthochromis_polyacanthus
ENSMUSG00000028889	Yrdc	100	90.476	ENSAMEG00000001173	YRDC	99	87.166	Ailuropoda_melanoleuca
ENSMUSG00000028889	Yrdc	100	70.476	ENSACIG00000017330	yrdc	77	63.158	Amphilophus_citrinellus
ENSMUSG00000028889	Yrdc	100	69.524	ENSAOCG00000021647	yrdc	79	61.722	Amphiprion_ocellaris
ENSMUSG00000028889	Yrdc	100	69.524	ENSAPEG00000006164	yrdc	79	61.722	Amphiprion_percula
ENSMUSG00000028889	Yrdc	100	68.571	ENSATEG00000010086	yrdc	75	63.725	Anabas_testudineus
ENSMUSG00000028889	Yrdc	100	71.429	ENSACAG00000017203	YRDC	100	63.850	Anolis_carolinensis
ENSMUSG00000028889	Yrdc	100	87.619	ENSANAG00000031052	-	97	78.832	Aotus_nancymaae
ENSMUSG00000028889	Yrdc	100	92.381	ENSANAG00000028788	-	93	87.330	Aotus_nancymaae
ENSMUSG00000028889	Yrdc	99	71.154	ENSACLG00000027775	yrdc	84	59.389	Astatotilapia_calliptera
ENSMUSG00000028889	Yrdc	100	68.571	ENSAMXG00000037791	yrdc	85	60.000	Astyanax_mexicanus
ENSMUSG00000028889	Yrdc	100	94.286	ENSBTAG00000006510	YRDC	99	83.871	Bos_taurus
ENSMUSG00000028889	Yrdc	100	39.623	WBGene00012997	Y48C3A.18	100	37.600	Caenorhabditis_elegans
ENSMUSG00000028889	Yrdc	100	93.333	ENSCJAG00000002078	YRDC	76	86.331	Callithrix_jacchus
ENSMUSG00000028889	Yrdc	100	86.667	ENSCAFG00000003253	YRDC	99	77.857	Canis_familiaris
ENSMUSG00000028889	Yrdc	100	86.667	ENSCAFG00020007843	YRDC	99	80.000	Canis_lupus_dingo
ENSMUSG00000028889	Yrdc	100	91.429	ENSCHIG00000007882	YRDC	99	83.871	Capra_hircus
ENSMUSG00000028889	Yrdc	100	92.381	ENSTSYG00000005555	YRDC	62	90.805	Carlito_syrichta
ENSMUSG00000028889	Yrdc	100	89.524	ENSCPOG00000036144	YRDC	100	83.214	Cavia_porcellus
ENSMUSG00000028889	Yrdc	100	93.333	ENSCCAG00000028891	YRDC	99	86.331	Cebus_capucinus
ENSMUSG00000028889	Yrdc	100	91.429	ENSCATG00000036928	YRDC	99	84.892	Cercocebus_atys
ENSMUSG00000028889	Yrdc	100	91.429	ENSCLAG00000015012	YRDC	100	85.714	Chinchilla_lanigera
ENSMUSG00000028889	Yrdc	100	91.429	ENSCSAG00000001116	YRDC	99	84.892	Chlorocebus_sabaeus
ENSMUSG00000028889	Yrdc	75	81.340	ENSCHOG00000005500	YRDC	100	81.340	Choloepus_hoffmanni
ENSMUSG00000028889	Yrdc	100	74.286	ENSCPBG00000018446	YRDC	92	67.593	Chrysemys_picta_bellii
ENSMUSG00000028889	Yrdc	99	50.459	ENSCING00000007564	-	98	49.765	Ciona_intestinalis
ENSMUSG00000028889	Yrdc	99	49.541	ENSCSAVG00000009982	-	98	47.867	Ciona_savignyi
ENSMUSG00000028889	Yrdc	100	92.381	ENSCANG00000031111	YRDC	99	85.252	Colobus_angolensis_palliatus
ENSMUSG00000028889	Yrdc	100	91.429	ENSCGRG00001000829	-	77	86.331	Cricetulus_griseus_chok1gshd
ENSMUSG00000028889	Yrdc	100	94.286	ENSCGRG00001014496	-	100	92.857	Cricetulus_griseus_chok1gshd
ENSMUSG00000028889	Yrdc	100	94.286	ENSCGRG00000001307	-	100	93.701	Cricetulus_griseus_crigri
ENSMUSG00000028889	Yrdc	99	70.192	ENSCSEG00000019075	yrdc	75	61.722	Cynoglossus_semilaevis
ENSMUSG00000028889	Yrdc	100	65.714	ENSCVAG00000017355	yrdc	86	56.277	Cyprinodon_variegatus
ENSMUSG00000028889	Yrdc	100	63.810	ENSDARG00000041428	yrdc	95	57.826	Danio_rerio
ENSMUSG00000028889	Yrdc	100	90.476	ENSDNOG00000038789	-	100	84.375	Dasypus_novemcinctus
ENSMUSG00000028889	Yrdc	100	67.290	ENSDNOG00000036198	-	97	61.000	Dasypus_novemcinctus
ENSMUSG00000028889	Yrdc	100	93.333	ENSDORG00000008788	Yrdc	87	90.863	Dipodomys_ordii
ENSMUSG00000028889	Yrdc	100	53.271	FBgn0061361	CG33786	81	48.515	Drosophila_melanogaster
ENSMUSG00000028889	Yrdc	85	89.888	ENSETEG00000003442	YRDC	100	71.786	Echinops_telfairi
ENSMUSG00000028889	Yrdc	99	58.654	ENSEBUG00000014080	yrdc	94	51.542	Eptatretus_burgeri
ENSMUSG00000028889	Yrdc	100	93.333	ENSEASG00005012253	YRDC	99	86.022	Equus_asinus_asinus
ENSMUSG00000028889	Yrdc	100	93.333	ENSECAG00000022522	YRDC	99	86.380	Equus_caballus
ENSMUSG00000028889	Yrdc	100	71.429	ENSELUG00000018071	yrdc	73	60.619	Esox_lucius
ENSMUSG00000028889	Yrdc	100	90.476	ENSFCAG00000011018	YRDC	100	86.429	Felis_catus
ENSMUSG00000028889	Yrdc	74	31.111	ENSFALG00000011333	-	57	31.111	Ficedula_albicollis
ENSMUSG00000028889	Yrdc	100	81.905	ENSFALG00000000964	YRDC	89	73.846	Ficedula_albicollis
ENSMUSG00000028889	Yrdc	100	93.333	ENSFDAG00000016507	-	100	93.333	Fukomys_damarensis
ENSMUSG00000028889	Yrdc	100	67.619	ENSFHEG00000001029	yrdc	96	54.217	Fundulus_heteroclitus
ENSMUSG00000028889	Yrdc	100	69.524	ENSGMOG00000015635	yrdc	97	63.725	Gadus_morhua
ENSMUSG00000028889	Yrdc	78	31.197	ENSGALG00000025899	-	75	31.197	Gallus_gallus
ENSMUSG00000028889	Yrdc	100	79.048	ENSGALG00000029001	YRDC	86	69.863	Gallus_gallus
ENSMUSG00000028889	Yrdc	100	64.762	ENSGAFG00000008396	yrdc	85	55.844	Gambusia_affinis
ENSMUSG00000028889	Yrdc	100	66.667	ENSGACG00000013878	yrdc	84	60.680	Gasterosteus_aculeatus
ENSMUSG00000028889	Yrdc	100	76.190	ENSGAGG00000014968	YRDC	96	68.018	Gopherus_agassizii
ENSMUSG00000028889	Yrdc	100	93.333	ENSGGOG00000007619	YRDC	99	85.971	Gorilla_gorilla
ENSMUSG00000028889	Yrdc	99	72.115	ENSHBUG00000009298	yrdc	84	59.825	Haplochromis_burtoni
ENSMUSG00000028889	Yrdc	100	92.381	ENSHGLG00000014075	YRDC	100	86.071	Heterocephalus_glaber_female
ENSMUSG00000028889	Yrdc	100	92.381	ENSHGLG00100002734	YRDC	100	76.786	Heterocephalus_glaber_male
ENSMUSG00000028889	Yrdc	100	62.857	ENSHCOG00000006598	yrdc	88	57.080	Hippocampus_comes
ENSMUSG00000028889	Yrdc	100	68.571	ENSIPUG00000014985	yrdc	92	58.850	Ictalurus_punctatus
ENSMUSG00000028889	Yrdc	100	95.238	ENSSTOG00000001643	YRDC	99	86.380	Ictidomys_tridecemlineatus
ENSMUSG00000028889	Yrdc	100	95.238	ENSJJAG00000023117	-	100	95.238	Jaculus_jaculus
ENSMUSG00000028889	Yrdc	99	71.154	ENSKMAG00000013468	yrdc	85	59.740	Kryptolebias_marmoratus
ENSMUSG00000028889	Yrdc	100	71.429	ENSLBEG00000027501	yrdc	84	59.389	Labrus_bergylta
ENSMUSG00000028889	Yrdc	100	73.333	ENSLACG00000010689	YRDC	95	64.734	Latimeria_chalumnae
ENSMUSG00000028889	Yrdc	69	31.776	ENSLACG00000017624	si:ch211-153b23.3	62	31.776	Latimeria_chalumnae
ENSMUSG00000028889	Yrdc	100	71.429	ENSLOCG00000003321	yrdc	90	61.927	Lepisosteus_oculatus
ENSMUSG00000028889	Yrdc	100	90.476	ENSLAFG00000017556	YRDC	100	84.286	Loxodonta_africana
ENSMUSG00000028889	Yrdc	100	91.429	ENSMFAG00000003487	YRDC	99	89.524	Macaca_fascicularis
ENSMUSG00000028889	Yrdc	100	91.429	ENSMMUG00000005372	YRDC	74	84.892	Macaca_mulatta
ENSMUSG00000028889	Yrdc	100	91.429	ENSMNEG00000029348	YRDC	99	84.892	Macaca_nemestrina
ENSMUSG00000028889	Yrdc	100	91.429	ENSMLEG00000041122	YRDC	99	87.919	Mandrillus_leucophaeus
ENSMUSG00000028889	Yrdc	100	67.619	ENSMAMG00000007315	yrdc	83	59.912	Mastacembelus_armatus
ENSMUSG00000028889	Yrdc	99	71.154	ENSMZEG00005006948	yrdc	84	59.389	Maylandia_zebra
ENSMUSG00000028889	Yrdc	100	79.048	ENSMGAG00000002833	YRDC	99	71.287	Meleagris_gallopavo
ENSMUSG00000028889	Yrdc	69	31.754	ENSMGAG00000005489	-	53	31.336	Meleagris_gallopavo
ENSMUSG00000028889	Yrdc	100	95.238	ENSMAUG00000003715	-	100	95.238	Mesocricetus_auratus
ENSMUSG00000028889	Yrdc	100	94.286	ENSMICG00000031688	YRDC	100	85.663	Microcebus_murinus
ENSMUSG00000028889	Yrdc	75	91.388	ENSMOCG00000000164	-	81	91.388	Microtus_ochrogaster
ENSMUSG00000028889	Yrdc	100	68.571	ENSMMOG00000002119	yrdc	86	58.120	Mola_mola
ENSMUSG00000028889	Yrdc	100	86.667	ENSMODG00000017750	YRDC	98	70.107	Monodelphis_domestica
ENSMUSG00000028889	Yrdc	100	71.429	ENSMALG00000012471	yrdc	85	60.088	Monopterus_albus
ENSMUSG00000028889	Yrdc	98	99.029	MGP_CAROLIEiJ_G0026453	Yrdc	98	99.029	Mus_caroli
ENSMUSG00000028889	Yrdc	100	99.048	MGP_PahariEiJ_G0028784	Yrdc	100	99.048	Mus_pahari
ENSMUSG00000028889	Yrdc	100	100.000	MGP_SPRETEiJ_G0027432	Yrdc	100	99.643	Mus_spretus
ENSMUSG00000028889	Yrdc	100	89.524	ENSMPUG00000014542	YRDC	87	87.156	Mustela_putorius_furo
ENSMUSG00000028889	Yrdc	100	76.190	ENSMLUG00000028796	-	98	62.681	Myotis_lucifugus
ENSMUSG00000028889	Yrdc	100	86.667	ENSMLUG00000024310	-	96	80.513	Myotis_lucifugus
ENSMUSG00000028889	Yrdc	100	90.476	ENSMLUG00000000955	-	99	83.696	Myotis_lucifugus
ENSMUSG00000028889	Yrdc	100	92.381	ENSNGAG00000019099	Yrdc	100	83.929	Nannospalax_galili
ENSMUSG00000028889	Yrdc	99	72.115	ENSNBRG00000009475	yrdc	86	58.974	Neolamprologus_brichardi
ENSMUSG00000028889	Yrdc	100	93.333	ENSNLEG00000011665	YRDC	99	85.612	Nomascus_leucogenys
ENSMUSG00000028889	Yrdc	100	88.571	ENSMEUG00000005068	YRDC	100	82.791	Notamacropus_eugenii
ENSMUSG00000028889	Yrdc	100	92.381	ENSODEG00000007401	YRDC	100	92.381	Octodon_degus
ENSMUSG00000028889	Yrdc	100	71.429	ENSONIG00000016213	yrdc	97	58.974	Oreochromis_niloticus
ENSMUSG00000028889	Yrdc	87	80.220	ENSOANG00000002048	-	87	76.577	Ornithorhynchus_anatinus
ENSMUSG00000028889	Yrdc	100	92.381	ENSOCUG00000005384	YRDC	96	86.786	Oryctolagus_cuniculus
ENSMUSG00000028889	Yrdc	99	65.385	ENSORLG00000014393	yrdc	75	59.804	Oryzias_latipes
ENSMUSG00000028889	Yrdc	99	65.385	ENSORLG00020019663	yrdc	76	59.804	Oryzias_latipes_hni
ENSMUSG00000028889	Yrdc	99	65.385	ENSORLG00015004625	yrdc	76	60.099	Oryzias_latipes_hsok
ENSMUSG00000028889	Yrdc	99	65.385	ENSOMEG00000018550	yrdc	92	54.098	Oryzias_melastigma
ENSMUSG00000028889	Yrdc	100	91.429	ENSOGAG00000030474	YRDC	100	84.420	Otolemur_garnettii
ENSMUSG00000028889	Yrdc	100	91.429	ENSOARG00000019873	YRDC	95	82.090	Ovis_aries
ENSMUSG00000028889	Yrdc	100	93.333	ENSPPAG00000039722	-	99	89.116	Pan_paniscus
ENSMUSG00000028889	Yrdc	100	89.524	ENSPPRG00000007752	YRDC	100	86.071	Panthera_pardus
ENSMUSG00000028889	Yrdc	100	89.524	ENSPTIG00000019821	YRDC	68	84.177	Panthera_tigris_altaica
ENSMUSG00000028889	Yrdc	100	93.333	ENSPTRG00000000557	YRDC	99	86.331	Pan_troglodytes
ENSMUSG00000028889	Yrdc	100	91.429	ENSPANG00000006487	YRDC	75	84.892	Papio_anubis
ENSMUSG00000028889	Yrdc	100	68.571	ENSPKIG00000004574	yrdc	78	60.369	Paramormyrops_kingsleyae
ENSMUSG00000028889	Yrdc	100	75.238	ENSPSIG00000006483	YRDC	92	61.303	Pelodiscus_sinensis
ENSMUSG00000028889	Yrdc	100	68.571	ENSPMGG00000004184	yrdc	78	62.255	Periophthalmus_magnuspinnatus
ENSMUSG00000028889	Yrdc	100	94.286	ENSPEMG00000016985	Yrdc	90	80.631	Peromyscus_maniculatus_bairdii
ENSMUSG00000028889	Yrdc	98	55.769	ENSPMAG00000002905	yrdc	96	57.303	Petromyzon_marinus
ENSMUSG00000028889	Yrdc	100	88.571	ENSPCIG00000025731	YRDC	98	72.598	Phascolarctos_cinereus
ENSMUSG00000028889	Yrdc	100	66.667	ENSPFOG00000023097	yrdc	85	56.277	Poecilia_formosa
ENSMUSG00000028889	Yrdc	100	65.714	ENSPLAG00000020882	yrdc	85	55.844	Poecilia_latipinna
ENSMUSG00000028889	Yrdc	100	66.667	ENSPMEG00000013237	yrdc	86	56.277	Poecilia_mexicana
ENSMUSG00000028889	Yrdc	100	66.667	ENSPREG00000005285	yrdc	85	56.277	Poecilia_reticulata
ENSMUSG00000028889	Yrdc	100	93.333	ENSPPYG00000001523	-	97	86.498	Pongo_abelii
ENSMUSG00000028889	Yrdc	100	87.619	ENSPCAG00000016850	YRDC	99	82.671	Procavia_capensis
ENSMUSG00000028889	Yrdc	100	95.238	ENSPCOG00000013214	YRDC	99	85.305	Propithecus_coquereli
ENSMUSG00000028889	Yrdc	100	93.333	ENSPVAG00000010147	YRDC	99	85.870	Pteropus_vampyrus
ENSMUSG00000028889	Yrdc	99	72.115	ENSPNYG00000013956	yrdc	84	59.825	Pundamilia_nyererei
ENSMUSG00000028889	Yrdc	98	68.932	ENSPNAG00000015625	yrdc	85	59.524	Pygocentrus_nattereri
ENSMUSG00000028889	Yrdc	100	97.143	ENSRNOG00000025424	Yrdc	100	96.429	Rattus_norvegicus
ENSMUSG00000028889	Yrdc	100	92.381	ENSRBIG00000032289	YRDC	99	84.892	Rhinopithecus_bieti
ENSMUSG00000028889	Yrdc	100	92.381	ENSRROG00000039370	YRDC	71	89.952	Rhinopithecus_roxellana
ENSMUSG00000028889	Yrdc	100	93.333	ENSSBOG00000018937	YRDC	86	90.547	Saimiri_boliviensis_boliviensis
ENSMUSG00000028889	Yrdc	100	85.714	ENSSHAG00000013957	-	100	81.757	Sarcophilus_harrisii
ENSMUSG00000028889	Yrdc	100	69.524	ENSSFOG00015006128	yrdc	88	63.107	Scleropages_formosus
ENSMUSG00000028889	Yrdc	100	71.429	ENSSMAG00000005195	yrdc	79	62.736	Scophthalmus_maximus
ENSMUSG00000028889	Yrdc	100	68.571	ENSSDUG00000009775	yrdc	87	57.872	Seriola_dumerili
ENSMUSG00000028889	Yrdc	67	31.818	ENSSDUG00000006736	-	90	31.792	Seriola_dumerili
ENSMUSG00000028889	Yrdc	100	68.571	ENSSLDG00000003196	yrdc	87	57.872	Seriola_lalandi_dorsalis
ENSMUSG00000028889	Yrdc	100	74.286	ENSSPUG00000003946	YRDC	97	59.073	Sphenodon_punctatus
ENSMUSG00000028889	Yrdc	100	66.667	ENSSPAG00000012559	yrdc	77	59.330	Stegastes_partitus
ENSMUSG00000028889	Yrdc	100	92.381	ENSSSCG00000040425	YRDC	100	85.357	Sus_scrofa
ENSMUSG00000028889	Yrdc	100	81.905	ENSTGUG00000001507	YRDC	98	77.778	Taeniopygia_guttata
ENSMUSG00000028889	Yrdc	100	60.952	ENSTRUG00000005923	yrdc	74	58.294	Takifugu_rubripes
ENSMUSG00000028889	Yrdc	98	90.291	ENSTBEG00000008863	YRDC	96	90.000	Tupaia_belangeri
ENSMUSG00000028889	Yrdc	100	92.381	ENSTTRG00000013538	-	99	86.486	Tursiops_truncatus
ENSMUSG00000028889	Yrdc	100	90.476	ENSUAMG00000006150	YRDC	100	88.177	Ursus_americanus
ENSMUSG00000028889	Yrdc	85	94.382	ENSVPAG00000006642	YRDC	100	72.766	Vicugna_pacos
ENSMUSG00000028889	Yrdc	100	87.619	ENSVVUG00000023132	-	50	84.211	Vulpes_vulpes
ENSMUSG00000028889	Yrdc	100	75.238	ENSXETG00000014420	yrdc	98	63.090	Xenopus_tropicalis
ENSMUSG00000028889	Yrdc	100	64.762	ENSXCOG00000000829	yrdc	95	55.411	Xiphophorus_couchianus
ENSMUSG00000028889	Yrdc	100	62.857	ENSXMAG00000014606	yrdc	80	54.545	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	IEA	Function
GO:0005515	protein binding	2675563.	IPI	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0006450	regulation of translational fidelity	21873635.	IBA	Process
GO:0016020	membrane	2675563.	IDA	Component
GO:0016779	nucleotidyltransferase activity	21873635.	IBA	Function
GO:0051051	negative regulation of transport	2675563.	ISO	Process