EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028898 (Gene tree)
Gene ID
71787
Gene Symbol
Trnau1ap
Alias
1110007F05Rik|SECp43|Trspap1
Full Name
tRNA selenocysteine 1 associated protein 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
17776 bases
Position
chr4:132311763-132329538
Accession
1919037
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000030730RRM_1PF00076.221.3e-2612
ENSMUSP00000030730RRM_1PF00076.221.3e-2622
ENSMUSP00000101582RRM_1PF00076.224.2e-1711
ENSMUSP00000120657RRM_1PF00076.222.1e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000125513-663-ENSMUSP0000012649249 (aa)-E9PYW1
ENSMUST00000144387-679--- (aa)--
ENSMUST00000150959-650--- (aa)--
ENSMUST00000131524-553--- (aa)--
ENSMUST00000137520-600-ENSMUSP0000012776747 (aa)-E9Q0Q0
ENSMUST00000030730-1130XM_006539180ENSMUSP00000030730287 (aa)XP_006539243Q80VC6
ENSMUST00000105960-371-ENSMUSP0000010158070 (aa)-A2CEQ9
ENSMUST00000147652-1017-ENSMUSP0000012727386 (aa)-E9Q3V7
ENSMUST00000105962-961-ENSMUSP00000101582247 (aa)-A2CEQ6
ENSMUST00000146166-1791--- (aa)--
ENSMUST00000141317-621--- (aa)--
ENSMUST00000127402-474-ENSMUSP00000120657146 (aa)-A2CEQ8
Gene Model
Click here to download ENSMUSG00000028898's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028898's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000028898Trnau1ap9830.952ENSMUSG00000008489Elavl26630.952
ENSMUSG00000028898Trnau1ap7930.198ENSMUSG00000071337Tia16031.285
ENSMUSG00000028898Trnau1ap8834.211ENSMUSG00000090919Pabpc4l8931.875
ENSMUSG00000028898Trnau1ap6032.386ENSMUSG00000030846Tial17333.019
ENSMUSG00000028898Trnau1ap7934.247ENSMUSG00000022283Pabpc18841.772
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028898Trnau1ap100100.000ENSG00000180098TRNAU1AP10098.955Homo_sapiens
ENSMUSG00000028898Trnau1ap9264.557ENSAPOG00000007148TRNAU1AP9858.416Acanthochromis_polyacanthus
ENSMUSG00000028898Trnau1ap9462.963ENSAPOG00000007188-8662.963Acanthochromis_polyacanthus
ENSMUSG00000028898Trnau1ap9462.963ENSAPOG00000010359-8662.963Acanthochromis_polyacanthus
ENSMUSG00000028898Trnau1ap100100.000ENSAMEG00000011367TRNAU1AP10097.909Ailuropoda_melanoleuca
ENSMUSG00000028898Trnau1ap9170.115ENSACIG00000004161trnau1apa9370.115Amphilophus_citrinellus
ENSMUSG00000028898Trnau1ap9264.557ENSAOCG00000008056trnau1apa9858.416Amphiprion_ocellaris
ENSMUSG00000028898Trnau1ap9264.557ENSAPEG00000008868trnau1apa9858.586Amphiprion_percula
ENSMUSG00000028898Trnau1ap9858.199ENSATEG00000012140trnau1apa9856.270Anabas_testudineus
ENSMUSG00000028898Trnau1ap9893.103ENSAPLG00000002606TRNAU1AP9992.963Anas_platyrhynchos
ENSMUSG00000028898Trnau1ap9987.500ENSACAG00000003995-9975.175Anolis_carolinensis
ENSMUSG00000028898Trnau1ap6752.083ENSACAG00000004205-7352.083Anolis_carolinensis
ENSMUSG00000028898Trnau1ap100100.000ENSANAG00000018976TRNAU1AP10099.190Aotus_nancymaae
ENSMUSG00000028898Trnau1ap9265.823ENSACLG00000018515trnau1apa9860.403Astatotilapia_calliptera
ENSMUSG00000028898Trnau1ap9565.556ENSAMXG00000029240-9665.556Astyanax_mexicanus
ENSMUSG00000028898Trnau1ap8172.857ENSAMXG00000013750trnau1apa9057.762Astyanax_mexicanus
ENSMUSG00000028898Trnau1ap100100.000ENSBTAG00000010393TRNAU1AP10098.606Bos_taurus
ENSMUSG00000028898Trnau1ap100100.000ENSCJAG00000009717TRNAU1AP10099.190Callithrix_jacchus
ENSMUSG00000028898Trnau1ap100100.000ENSCAFG00000011735TRNAU1AP10098.606Canis_familiaris
ENSMUSG00000028898Trnau1ap100100.000ENSCAFG00020023584TRNAU1AP10098.606Canis_lupus_dingo
ENSMUSG00000028898Trnau1ap100100.000ENSCHIG00000023215TRNAU1AP10098.785Capra_hircus
ENSMUSG00000028898Trnau1ap100100.000ENSTSYG00000003506TRNAU1AP10098.785Carlito_syrichta
ENSMUSG00000028898Trnau1ap100100.000ENSCPOG00000001925TRNAU1AP10098.785Cavia_porcellus
ENSMUSG00000028898Trnau1ap100100.000ENSCCAG00000037506TRNAU1AP10099.190Cebus_capucinus
ENSMUSG00000028898Trnau1ap100100.000ENSCATG00000044617TRNAU1AP10099.190Cercocebus_atys
ENSMUSG00000028898Trnau1ap100100.000ENSCLAG00000008223TRNAU1AP10097.976Chinchilla_lanigera
ENSMUSG00000028898Trnau1ap100100.000ENSCSAG00000001014TRNAU1AP10098.955Chlorocebus_sabaeus
ENSMUSG00000028898Trnau1ap9894.937ENSCPBG00000000121TRNAU1AP10093.796Chrysemys_picta_bellii
ENSMUSG00000028898Trnau1ap7945.588ENSCSAVG00000011781-9844.681Ciona_savignyi
ENSMUSG00000028898Trnau1ap10087.108ENSCANG00000041949TRNAU1AP10098.305Colobus_angolensis_palliatus
ENSMUSG00000028898Trnau1ap100100.000ENSCGRG00001004713Trnau1ap10099.190Cricetulus_griseus_chok1gshd
ENSMUSG00000028898Trnau1ap100100.000ENSCGRG00000014532Trnau1ap10099.190Cricetulus_griseus_crigri
ENSMUSG00000028898Trnau1ap9267.089ENSCSEG00000006663trnau1apa9458.607Cynoglossus_semilaevis
ENSMUSG00000028898Trnau1ap9461.728ENSCVAG00000018069trnau1apa9459.341Cyprinodon_variegatus
ENSMUSG00000028898Trnau1ap8468.056ENSDARG00000101323trnau1apa8851.957Danio_rerio
ENSMUSG00000028898Trnau1ap100100.000ENSDNOG00000033009TRNAU1AP10098.606Dasypus_novemcinctus
ENSMUSG00000028898Trnau1ap9372.500ENSDNOG00000047959-9777.005Dasypus_novemcinctus
ENSMUSG00000028898Trnau1ap100100.000ENSDORG00000006349Trnau1ap10099.134Dipodomys_ordii
ENSMUSG00000028898Trnau1ap9255.556FBgn0031607CG154405152.023Drosophila_melanogaster
ENSMUSG00000028898Trnau1ap98100.000ENSETEG00000012594TRNAU1AP10093.878Echinops_telfairi
ENSMUSG00000028898Trnau1ap8762.338ENSEBUG00000009958-7862.338Eptatretus_burgeri
ENSMUSG00000028898Trnau1ap8361.972ENSEBUG00000006349-6059.341Eptatretus_burgeri
ENSMUSG00000028898Trnau1ap100100.000ENSEASG00005010062TRNAU1AP10099.190Equus_asinus_asinus
ENSMUSG00000028898Trnau1ap100100.000ENSECAG00000012980TRNAU1AP10099.190Equus_caballus
ENSMUSG00000028898Trnau1ap9670.526ENSELUG00000022790-9664.773Esox_lucius
ENSMUSG00000028898Trnau1ap9662.718ENSELUG00000017686trnau1apa9462.369Esox_lucius
ENSMUSG00000028898Trnau1ap100100.000ENSFCAG00000013401TRNAU1AP10098.955Felis_catus
ENSMUSG00000028898Trnau1ap9896.203ENSFALG00000001371TRNAU1AP10093.066Ficedula_albicollis
ENSMUSG00000028898Trnau1ap10098.913ENSFDAG00000018599TRNAU1AP10097.571Fukomys_damarensis
ENSMUSG00000028898Trnau1ap9260.714ENSFHEG00000018232trnau1apa8065.217Fundulus_heteroclitus
ENSMUSG00000028898Trnau1ap9553.846ENSGMOG00000016508trnau1apa9354.930Gadus_morhua
ENSMUSG00000028898Trnau1ap6849.296ENSGALG00000012721C2H6orf529544.788Gallus_gallus
ENSMUSG00000028898Trnau1ap10096.739ENSGALG00000001310-10093.031Gallus_gallus
ENSMUSG00000028898Trnau1ap9262.025ENSGAFG00000004928trnau1apa8866.667Gambusia_affinis
ENSMUSG00000028898Trnau1ap9767.816ENSGACG00000001443trnau1apa9559.932Gasterosteus_aculeatus
ENSMUSG00000028898Trnau1ap9894.937ENSGAGG00000004940TRNAU1AP10094.161Gopherus_agassizii
ENSMUSG00000028898Trnau1ap100100.000ENSGGOG00000003511TRNAU1AP10099.190Gorilla_gorilla
ENSMUSG00000028898Trnau1ap9265.823ENSHBUG00000002510trnau1apa9859.406Haplochromis_burtoni
ENSMUSG00000028898Trnau1ap10098.913ENSHGLG00000010380TRNAU1AP10097.571Heterocephalus_glaber_female
ENSMUSG00000028898Trnau1ap10095.122ENSHGLG00100012699TRNAU1AP10095.122Heterocephalus_glaber_male
ENSMUSG00000028898Trnau1ap9956.766ENSHCOG00000014770trnau1apa9766.429Hippocampus_comes
ENSMUSG00000028898Trnau1ap100100.000ENSSTOG00000000079TRNAU1AP10099.190Ictidomys_tridecemlineatus
ENSMUSG00000028898Trnau1ap100100.000ENSJJAG00000010128Trnau1ap10098.381Jaculus_jaculus
ENSMUSG00000028898Trnau1ap9263.291ENSKMAG00000001230trnau1apa9358.131Kryptolebias_marmoratus
ENSMUSG00000028898Trnau1ap9560.410ENSLBEG00000011683trnau1apa9359.524Labrus_bergylta
ENSMUSG00000028898Trnau1ap9971.930ENSLACG00000005541TRNAU1AP9971.930Latimeria_chalumnae
ENSMUSG00000028898Trnau1ap9972.222ENSLOCG00000004041trnau1apa9970.979Lepisosteus_oculatus
ENSMUSG00000028898Trnau1ap10098.913ENSLAFG00000007628TRNAU1AP10098.606Loxodonta_africana
ENSMUSG00000028898Trnau1ap100100.000ENSMFAG00000043751TRNAU1AP10098.955Macaca_fascicularis
ENSMUSG00000028898Trnau1ap100100.000ENSMMUG00000006561TRNAU1AP10099.190Macaca_mulatta
ENSMUSG00000028898Trnau1ap100100.000ENSMNEG00000044201TRNAU1AP10099.190Macaca_nemestrina
ENSMUSG00000028898Trnau1ap100100.000ENSMLEG00000015649TRNAU1AP10098.955Mandrillus_leucophaeus
ENSMUSG00000028898Trnau1ap8970.588ENSMAMG00000001247trnau1apa9858.824Mastacembelus_armatus
ENSMUSG00000028898Trnau1ap9265.823ENSMZEG00005017722trnau1apa9860.403Maylandia_zebra
ENSMUSG00000028898Trnau1ap9896.386ENSMGAG00000002105TRNAU1AP10092.806Meleagris_gallopavo
ENSMUSG00000028898Trnau1ap100100.000ENSMICG00000008386TRNAU1AP10098.785Microcebus_murinus
ENSMUSG00000028898Trnau1ap100100.000ENSMOCG00000011189Trnau1ap10098.785Microtus_ochrogaster
ENSMUSG00000028898Trnau1ap8568.493ENSMMOG00000012107trnau1apa9556.429Mola_mola
ENSMUSG00000028898Trnau1ap10098.913ENSMODG00000010927TRNAU1AP10094.774Monodelphis_domestica
ENSMUSG00000028898Trnau1ap9767.568ENSMALG00000016778trnau1apa9458.362Monopterus_albus
ENSMUSG00000028898Trnau1ap100100.000MGP_CAROLIEiJ_G0026563Trnau1ap100100.000Mus_caroli
ENSMUSG00000028898Trnau1ap100100.000MGP_PahariEiJ_G0028896Trnau1ap100100.000Mus_pahari
ENSMUSG00000028898Trnau1ap100100.000MGP_SPRETEiJ_G0027544Trnau1ap100100.000Mus_spretus
ENSMUSG00000028898Trnau1ap100100.000ENSMPUG00000015511TRNAU1AP10098.258Mustela_putorius_furo
ENSMUSG00000028898Trnau1ap100100.000ENSMLUG00000012586TRNAU1AP10098.606Myotis_lucifugus
ENSMUSG00000028898Trnau1ap100100.000ENSNGAG00000015881Trnau1ap10097.166Nannospalax_galili
ENSMUSG00000028898Trnau1ap9864.103ENSNBRG00000001758trnau1apa9856.997Neolamprologus_brichardi
ENSMUSG00000028898Trnau1ap100100.000ENSNLEG00000009822TRNAU1AP10098.955Nomascus_leucogenys
ENSMUSG00000028898Trnau1ap9898.795ENSMEUG00000006117TRNAU1AP10093.525Notamacropus_eugenii
ENSMUSG00000028898Trnau1ap99100.000ENSOPRG00000007084-6997.273Ochotona_princeps
ENSMUSG00000028898Trnau1ap100100.000ENSODEG00000002970TRNAU1AP10098.381Octodon_degus
ENSMUSG00000028898Trnau1ap9657.273ENSONIG00000004715trnau1apa8871.250Oreochromis_niloticus
ENSMUSG00000028898Trnau1ap9894.521ENSOANG00000005325-9974.476Ornithorhynchus_anatinus
ENSMUSG00000028898Trnau1ap10097.826ENSOCUG00000011704-10096.864Oryctolagus_cuniculus
ENSMUSG00000028898Trnau1ap9973.913ENSOCUG00000006834-10074.219Oryctolagus_cuniculus
ENSMUSG00000028898Trnau1ap10076.736ENSOCUG00000002353-10076.736Oryctolagus_cuniculus
ENSMUSG00000028898Trnau1ap9767.816ENSORLG00000010428trnau1apa9556.690Oryzias_latipes
ENSMUSG00000028898Trnau1ap9767.816ENSORLG00020000926trnau1ap9556.507Oryzias_latipes_hni
ENSMUSG00000028898Trnau1ap9767.816ENSORLG00015009858trnau1ap9556.507Oryzias_latipes_hsok
ENSMUSG00000028898Trnau1ap9767.816ENSOMEG00000007873trnau1apa9555.822Oryzias_melastigma
ENSMUSG00000028898Trnau1ap100100.000ENSOGAG00000002274TRNAU1AP10098.606Otolemur_garnettii
ENSMUSG00000028898Trnau1ap100100.000ENSOARG00000002843TRNAU1AP10098.258Ovis_aries
ENSMUSG00000028898Trnau1ap100100.000ENSPPAG00000033927TRNAU1AP10098.955Pan_paniscus
ENSMUSG00000028898Trnau1ap100100.000ENSPPRG00000004416TRNAU1AP10098.955Panthera_pardus
ENSMUSG00000028898Trnau1ap100100.000ENSPTIG00000016677TRNAU1AP10098.955Panthera_tigris_altaica
ENSMUSG00000028898Trnau1ap9380.074ENSPTRG00000000434-9778.598Pan_troglodytes
ENSMUSG00000028898Trnau1ap100100.000ENSPANG00000016019TRNAU1AP10099.190Papio_anubis
ENSMUSG00000028898Trnau1ap9474.468ENSPKIG00000022205-9374.468Paramormyrops_kingsleyae
ENSMUSG00000028898Trnau1ap9871.111ENSPKIG00000015511trnau1apa9257.951Paramormyrops_kingsleyae
ENSMUSG00000028898Trnau1ap9896.203ENSPSIG00000006864TRNAU1AP10094.161Pelodiscus_sinensis
ENSMUSG00000028898Trnau1ap9461.397ENSPMGG00000023893trnau1apa9160.517Periophthalmus_magnuspinnatus
ENSMUSG00000028898Trnau1ap10098.913ENSPEMG00000007877Trnau1ap10098.785Peromyscus_maniculatus_bairdii
ENSMUSG00000028898Trnau1ap8165.714ENSPMAG00000000592trnau1apa9760.227Petromyzon_marinus
ENSMUSG00000028898Trnau1ap9562.637ENSPMAG00000005934trnau1apa9862.637Petromyzon_marinus
ENSMUSG00000028898Trnau1ap9262.025ENSPFOG00000008100trnau1apa9357.639Poecilia_formosa
ENSMUSG00000028898Trnau1ap9652.830ENSPLAG00000010236trnau1apa9357.401Poecilia_latipinna
ENSMUSG00000028898Trnau1ap9656.075ENSPMEG00000016387trnau1apa9256.552Poecilia_mexicana
ENSMUSG00000028898Trnau1ap9553.147ENSPREG00000019821trnau1apa8664.286Poecilia_reticulata
ENSMUSG00000028898Trnau1ap98100.000ENSPPYG00000001639-10090.283Pongo_abelii
ENSMUSG00000028898Trnau1ap9894.628ENSPCOG00000023470-10094.628Propithecus_coquereli
ENSMUSG00000028898Trnau1ap100100.000ENSPCOG00000027712-10098.606Propithecus_coquereli
ENSMUSG00000028898Trnau1ap100100.000ENSPVAG00000017214TRNAU1AP10098.955Pteropus_vampyrus
ENSMUSG00000028898Trnau1ap9858.033ENSPNYG00000010130trnau1apa9859.684Pundamilia_nyererei
ENSMUSG00000028898Trnau1ap8569.863ENSPNAG00000024905trnau1apa9154.317Pygocentrus_nattereri
ENSMUSG00000028898Trnau1ap100100.000ENSRNOG00000055344Trnau1ap9290.775Rattus_norvegicus
ENSMUSG00000028898Trnau1ap100100.000ENSRBIG00000029083TRNAU1AP10099.190Rhinopithecus_bieti
ENSMUSG00000028898Trnau1ap100100.000ENSRROG00000029128TRNAU1AP10099.190Rhinopithecus_roxellana
ENSMUSG00000028898Trnau1ap100100.000ENSSBOG00000021299TRNAU1AP10099.190Saimiri_boliviensis_boliviensis
ENSMUSG00000028898Trnau1ap10098.913ENSSHAG00000008108TRNAU1AP10094.077Sarcophilus_harrisii
ENSMUSG00000028898Trnau1ap9855.410ENSSMAG00000020851trnau1apa9856.721Scophthalmus_maximus
ENSMUSG00000028898Trnau1ap9265.823ENSSDUG00000011734trnau1apa9457.143Seriola_dumerili
ENSMUSG00000028898Trnau1ap9670.073ENSSLDG00000012101trnau1apa9260.851Seriola_lalandi_dorsalis
ENSMUSG00000028898Trnau1ap9897.590ENSSARG00000007536TRNAU1AP10097.842Sorex_araneus
ENSMUSG00000028898Trnau1ap6181.250ENSSPUG00000010415-10081.250Sphenodon_punctatus
ENSMUSG00000028898Trnau1ap10093.478ENSSPUG00000010400-10085.664Sphenodon_punctatus
ENSMUSG00000028898Trnau1ap9264.557ENSSPAG00000005029trnau1apa9857.980Stegastes_partitus
ENSMUSG00000028898Trnau1ap100100.000ENSSSCG00000030284TRNAU1AP10098.955Sus_scrofa
ENSMUSG00000028898Trnau1ap9896.386ENSTGUG00000000735-10093.525Taeniopygia_guttata
ENSMUSG00000028898Trnau1ap6853.061ENSTGUG00000005908-10053.061Taeniopygia_guttata
ENSMUSG00000028898Trnau1ap9265.823ENSTRUG00000003352trnau1apa9857.807Takifugu_rubripes
ENSMUSG00000028898Trnau1ap9263.291ENSTNIG00000006129trnau1apa9856.766Tetraodon_nigroviridis
ENSMUSG00000028898Trnau1ap98100.000ENSTBEG00000008049-10086.939Tupaia_belangeri
ENSMUSG00000028898Trnau1ap100100.000ENSTTRG00000001854TRNAU1AP10098.606Tursiops_truncatus
ENSMUSG00000028898Trnau1ap98100.000ENSUAMG00000008789TRNAU1AP10098.540Ursus_americanus
ENSMUSG00000028898Trnau1ap100100.000ENSUMAG00000011068TRNAU1AP10098.258Ursus_maritimus
ENSMUSG00000028898Trnau1ap10088.014ENSVPAG00000006778TRNAU1AP10088.014Vicugna_pacos
ENSMUSG00000028898Trnau1ap100100.000ENSVVUG00000012518TRNAU1AP9396.831Vulpes_vulpes
ENSMUSG00000028898Trnau1ap9262.025ENSXMAG00000017361trnau1apa9357.639Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding-ISOFunction
GO:0001514selenocysteine incorporation16230358.IDAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding16230358.IPIFunction
GO:0005634nucleus16230358.IDAComponent
GO:0005737cytoplasm-IEAComponent
GO:0006412translation-IEAProcess

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