EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000028902 (Gene tree)
Gene ID
75062
Gene Symbol
Sf3a3
Alias
4930512K19Rik|60kDa
Full Name
splicing factor 3a%2C subunit 3
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
17685 bases
Position
chr4:124714776-124732460
Accession
1922312
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000030734SF3a60_bindingdPF12108.83.4e-1511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000030734-1820-ENSMUSP00000030734501 (aa)-Q9D554
ENSMUST00000154712-788--- (aa)--
ENSMUST00000151049-879--- (aa)--
Gene Model
Click here to download ENSMUSG00000028902's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000028902's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000028902Sf3a310099.202ENSG00000183431SF3A310099.202Homo_sapiens
ENSMUSG00000028902Sf3a310091.816ENSAPOG00000015608sf3a310091.816Acanthochromis_polyacanthus
ENSMUSG00000028902Sf3a310099.202ENSAMEG00000001262SF3A310099.202Ailuropoda_melanoleuca
ENSMUSG00000028902Sf3a39585.207ENSACIG00000009061sf3a39985.207Amphilophus_citrinellus
ENSMUSG00000028902Sf3a310092.415ENSAOCG00000013954sf3a310092.415Amphiprion_ocellaris
ENSMUSG00000028902Sf3a310092.415ENSAPEG00000007297sf3a310092.415Amphiprion_percula
ENSMUSG00000028902Sf3a310091.218ENSATEG00000008754sf3a310091.218Anabas_testudineus
ENSMUSG00000028902Sf3a39497.228ENSAPLG00000014900SF3A310097.228Anas_platyrhynchos
ENSMUSG00000028902Sf3a310096.008ENSACAG00000017058SF3A310096.008Anolis_carolinensis
ENSMUSG00000028902Sf3a39994.980ENSANAG00000014878SF3A310094.980Aotus_nancymaae
ENSMUSG00000028902Sf3a310076.647ENSANAG00000036903-10076.647Aotus_nancymaae
ENSMUSG00000028902Sf3a310091.417ENSACLG00000017977sf3a310091.417Astatotilapia_calliptera
ENSMUSG00000028902Sf3a310091.417ENSAMXG00000016855sf3a38791.417Astyanax_mexicanus
ENSMUSG00000028902Sf3a310099.002ENSBTAG00000007299SF3A310099.002Bos_taurus
ENSMUSG00000028902Sf3a310052.087WBGene00011758T13H5.410052.087Caenorhabditis_elegans
ENSMUSG00000028902Sf3a310099.202ENSCJAG00000002176SF3A310099.202Callithrix_jacchus
ENSMUSG00000028902Sf3a310099.202ENSCAFG00000000683-10099.202Canis_familiaris
ENSMUSG00000028902Sf3a310099.202ENSCAFG00000003222-10099.202Canis_familiaris
ENSMUSG00000028902Sf3a310099.202ENSCAFG00020006186SF3A310099.202Canis_lupus_dingo
ENSMUSG00000028902Sf3a310099.002ENSCHIG00000020638SF3A310099.002Capra_hircus
ENSMUSG00000028902Sf3a310093.214ENSTSYG00000008417SF3A310093.214Carlito_syrichta
ENSMUSG00000028902Sf3a38563.844ENSCAPG00000003466SF3A310060.870Cavia_aperea
ENSMUSG00000028902Sf3a310099.401ENSCPOG00000008660SF3A310099.401Cavia_porcellus
ENSMUSG00000028902Sf3a310099.202ENSCCAG00000033732SF3A310099.202Cebus_capucinus
ENSMUSG00000028902Sf3a310071.173ENSCCAG00000034048-10066.998Cebus_capucinus
ENSMUSG00000028902Sf3a310099.202ENSCATG00000043496SF3A310099.202Cercocebus_atys
ENSMUSG00000028902Sf3a39481.663ENSCATG00000041660-10081.876Cercocebus_atys
ENSMUSG00000028902Sf3a310073.506ENSCATG00000043537-10074.104Cercocebus_atys
ENSMUSG00000028902Sf3a310099.601ENSCLAG00000010838SF3A310099.601Chinchilla_lanigera
ENSMUSG00000028902Sf3a39599.160ENSCSAG00000001120SF3A310099.160Chlorocebus_sabaeus
ENSMUSG00000028902Sf3a38088.889ENSCHOG00000006849SF3A38088.889Choloepus_hoffmanni
ENSMUSG00000028902Sf3a37066.759ENSCPBG00000007472-9566.575Chrysemys_picta_bellii
ENSMUSG00000028902Sf3a310088.423ENSCPBG00000018291-10088.423Chrysemys_picta_bellii
ENSMUSG00000028902Sf3a310067.729ENSCING00000002730-10067.729Ciona_intestinalis
ENSMUSG00000028902Sf3a310067.864ENSCSAVG00000005063-10067.864Ciona_savignyi
ENSMUSG00000028902Sf3a310070.060ENSCANG00000035535-10070.060Colobus_angolensis_palliatus
ENSMUSG00000028902Sf3a310099.202ENSCANG00000042083SF3A310099.202Colobus_angolensis_palliatus
ENSMUSG00000028902Sf3a3100100.000ENSCGRG00001011320Sf3a3100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000028902Sf3a3100100.000ENSCGRG00000012156Sf3a3100100.000Cricetulus_griseus_crigri
ENSMUSG00000028902Sf3a310090.220ENSCSEG00000010401sf3a310090.220Cynoglossus_semilaevis
ENSMUSG00000028902Sf3a39489.552ENSCVAG00000010239sf3a39589.552Cyprinodon_variegatus
ENSMUSG00000028902Sf3a310090.818ENSDARG00000100114sf3a310091.408Danio_rerio
ENSMUSG00000028902Sf3a39199.125ENSDNOG00000046628SF3A39999.125Dasypus_novemcinctus
ENSMUSG00000028902Sf3a310099.202ENSDORG00000008798Sf3a310099.202Dipodomys_ordii
ENSMUSG00000028902Sf3a310064.822FBgn0014366noi10064.625Drosophila_melanogaster
ENSMUSG00000028902Sf3a310080.915ENSEBUG00000015411sf3a39281.511Eptatretus_burgeri
ENSMUSG00000028902Sf3a310099.202ENSEASG00005012906SF3A310099.202Equus_asinus_asinus
ENSMUSG00000028902Sf3a310099.202ENSECAG00000017333SF3A310099.202Equus_caballus
ENSMUSG00000028902Sf3a310089.222ENSELUG00000010024sf3a310089.222Esox_lucius
ENSMUSG00000028902Sf3a310099.202ENSFCAG00000027772SF3A310099.202Felis_catus
ENSMUSG00000028902Sf3a310096.607ENSFALG00000001003SF3A310096.607Ficedula_albicollis
ENSMUSG00000028902Sf3a310099.401ENSFDAG00000020908SF3A310099.401Fukomys_damarensis
ENSMUSG00000028902Sf3a310090.220ENSFHEG00000019107sf3a310090.220Fundulus_heteroclitus
ENSMUSG00000028902Sf3a310088.623ENSGMOG00000015540sf3a310088.623Gadus_morhua
ENSMUSG00000028902Sf3a310096.607ENSGALG00000001540SF3A310096.607Gallus_gallus
ENSMUSG00000028902Sf3a310090.419ENSGAFG00000002320sf3a310090.419Gambusia_affinis
ENSMUSG00000028902Sf3a310091.617ENSGACG00000007842sf3a310091.617Gasterosteus_aculeatus
ENSMUSG00000028902Sf3a310096.806ENSGAGG00000014980SF3A310096.806Gopherus_agassizii
ENSMUSG00000028902Sf3a310077.046ENSGGOG00000022611-10076.447Gorilla_gorilla
ENSMUSG00000028902Sf3a310099.202ENSGGOG00000013928SF3A310099.202Gorilla_gorilla
ENSMUSG00000028902Sf3a310091.417ENSHBUG00000018158sf3a310091.667Haplochromis_burtoni
ENSMUSG00000028902Sf3a310099.601ENSHGLG00000012502SF3A310099.601Heterocephalus_glaber_female
ENSMUSG00000028902Sf3a310099.601ENSHGLG00100010546SF3A310099.601Heterocephalus_glaber_male
ENSMUSG00000028902Sf3a310089.222ENSHCOG00000015109sf3a310089.222Hippocampus_comes
ENSMUSG00000028902Sf3a310090.619ENSIPUG00000011603sf3a310090.619Ictalurus_punctatus
ENSMUSG00000028902Sf3a310099.800ENSSTOG00000001691SF3A310099.800Ictidomys_tridecemlineatus
ENSMUSG00000028902Sf3a310099.601ENSJJAG00000012404Sf3a310099.601Jaculus_jaculus
ENSMUSG00000028902Sf3a310090.220ENSKMAG00000007632sf3a310090.220Kryptolebias_marmoratus
ENSMUSG00000028902Sf3a310083.466ENSLBEG00000000816sf3a310083.466Labrus_bergylta
ENSMUSG00000028902Sf3a310092.615ENSLOCG00000003273sf3a310092.615Lepisosteus_oculatus
ENSMUSG00000028902Sf3a310086.627ENSLAFG00000008094SF3A310086.627Loxodonta_africana
ENSMUSG00000028902Sf3a39481.450ENSMFAG00000036706-10081.663Macaca_fascicularis
ENSMUSG00000028902Sf3a310099.202ENSMFAG00000043047SF3A310099.202Macaca_fascicularis
ENSMUSG00000028902Sf3a310078.685ENSMMUG00000038820-10078.884Macaca_mulatta
ENSMUSG00000028902Sf3a310099.202ENSMMUG00000023199SF3A310099.202Macaca_mulatta
ENSMUSG00000028902Sf3a39478.465ENSMNEG00000028686-10078.678Macaca_nemestrina
ENSMUSG00000028902Sf3a310099.202ENSMNEG00000044291SF3A310099.202Macaca_nemestrina
ENSMUSG00000028902Sf3a310099.202ENSMLEG00000030641SF3A310099.202Mandrillus_leucophaeus
ENSMUSG00000028902Sf3a310082.834ENSMLEG00000036714-10083.034Mandrillus_leucophaeus
ENSMUSG00000028902Sf3a310072.709ENSMLEG00000028631-10073.307Mandrillus_leucophaeus
ENSMUSG00000028902Sf3a310091.816ENSMAMG00000001942sf3a310091.816Mastacembelus_armatus
ENSMUSG00000028902Sf3a310091.417ENSMZEG00005016987sf3a310091.417Maylandia_zebra
ENSMUSG00000028902Sf3a310091.252ENSMGAG00000002875SF3A310091.252Meleagris_gallopavo
ENSMUSG00000028902Sf3a310094.810ENSMICG00000001485-10094.810Microcebus_murinus
ENSMUSG00000028902Sf3a310093.613ENSMICG00000043548-10093.613Microcebus_murinus
ENSMUSG00000028902Sf3a39196.943ENSMICG00000026541-10096.943Microcebus_murinus
ENSMUSG00000028902Sf3a39592.842ENSMOCG00000014565-9792.842Microtus_ochrogaster
ENSMUSG00000028902Sf3a310096.208ENSMOCG00000019939-10096.208Microtus_ochrogaster
ENSMUSG00000028902Sf3a310091.617ENSMMOG00000014307sf3a310091.617Mola_mola
ENSMUSG00000028902Sf3a310078.447ENSMODG00000017729-10077.756Monodelphis_domestica
ENSMUSG00000028902Sf3a310091.218ENSMODG00000024045-10091.218Monodelphis_domestica
ENSMUSG00000028902Sf3a310091.018ENSMALG00000004836sf3a310091.447Monopterus_albus
ENSMUSG00000028902Sf3a3100100.000MGP_CAROLIEiJ_G0026449Sf3a3100100.000Mus_caroli
ENSMUSG00000028902Sf3a310094.212MGP_PahariEiJ_G0028780Sf3a310094.212Mus_pahari
ENSMUSG00000028902Sf3a3100100.000MGP_SPRETEiJ_G0027428Sf3a3100100.000Mus_spretus
ENSMUSG00000028902Sf3a310099.202ENSMLUG00000000991SF3A310099.202Myotis_lucifugus
ENSMUSG00000028902Sf3a310093.413ENSNGAG00000018032Sf3a310093.413Nannospalax_galili
ENSMUSG00000028902Sf3a310090.419ENSNLEG00000011720SF3A310090.419Nomascus_leucogenys
ENSMUSG00000028902Sf3a310099.601ENSOPRG00000012785SF3A310099.601Ochotona_princeps
ENSMUSG00000028902Sf3a310096.407ENSODEG00000006854-10096.407Octodon_degus
ENSMUSG00000028902Sf3a310087.226ENSODEG00000018393-10087.026Octodon_degus
ENSMUSG00000028902Sf3a310084.064ENSODEG00000000937-10086.653Octodon_degus
ENSMUSG00000028902Sf3a310094.411ENSODEG00000007470-10094.411Octodon_degus
ENSMUSG00000028902Sf3a38791.954ENSONIG00000010296sf3a310091.954Oreochromis_niloticus
ENSMUSG00000028902Sf3a39498.294ENSOANG00000002473SF3A310098.294Ornithorhynchus_anatinus
ENSMUSG00000028902Sf3a310099.601ENSOCUG00000005407SF3A310099.601Oryctolagus_cuniculus
ENSMUSG00000028902Sf3a310090.619ENSORLG00000008175sf3a310090.619Oryzias_latipes
ENSMUSG00000028902Sf3a310090.419ENSORLG00020013708sf3a310090.419Oryzias_latipes_hni
ENSMUSG00000028902Sf3a310090.419ENSORLG00015004104sf3a310090.419Oryzias_latipes_hsok
ENSMUSG00000028902Sf3a310090.619ENSOMEG00000020177sf3a310090.619Oryzias_melastigma
ENSMUSG00000028902Sf3a310099.002ENSOARG00000019950SF3A310099.002Ovis_aries
ENSMUSG00000028902Sf3a310076.447ENSPPAG00000039955-10075.848Pan_paniscus
ENSMUSG00000028902Sf3a310099.202ENSPPAG00000034066SF3A310099.202Pan_paniscus
ENSMUSG00000028902Sf3a310099.202ENSPPRG00000001258SF3A310099.202Panthera_pardus
ENSMUSG00000028902Sf3a310099.202ENSPTIG00000007515SF3A310099.202Panthera_tigris_altaica
ENSMUSG00000028902Sf3a310099.202ENSPTRG00000000559SF3A310099.202Pan_troglodytes
ENSMUSG00000028902Sf3a310077.246ENSPTRG00000046013-10076.647Pan_troglodytes
ENSMUSG00000028902Sf3a310085.828ENSPANG00000029393-10086.028Papio_anubis
ENSMUSG00000028902Sf3a310072.655ENSPANG00000031214-10071.657Papio_anubis
ENSMUSG00000028902Sf3a310099.202ENSPANG00000021859SF3A310099.202Papio_anubis
ENSMUSG00000028902Sf3a310092.216ENSPKIG00000004719sf3a310092.216Paramormyrops_kingsleyae
ENSMUSG00000028902Sf3a310094.235ENSPSIG00000004273SF3A310094.235Pelodiscus_sinensis
ENSMUSG00000028902Sf3a39190.372ENSPMGG00000003610sf3a39490.372Periophthalmus_magnuspinnatus
ENSMUSG00000028902Sf3a3100100.000ENSPEMG00000020805Sf3a3100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000028902Sf3a35481.111ENSPMAG00000001044sf3a39881.111Petromyzon_marinus
ENSMUSG00000028902Sf3a310098.802ENSPCIG00000025719SF3A310098.802Phascolarctos_cinereus
ENSMUSG00000028902Sf3a310090.619ENSPFOG00000005284sf3a310090.619Poecilia_formosa
ENSMUSG00000028902Sf3a39987.324ENSPLAG00000003979sf3a39287.324Poecilia_latipinna
ENSMUSG00000028902Sf3a37884.733ENSPMEG00000021132sf3a38884.733Poecilia_mexicana
ENSMUSG00000028902Sf3a310090.220ENSPREG00000013802sf3a310090.220Poecilia_reticulata
ENSMUSG00000028902Sf3a310096.407ENSPPYG00000001519SF3A310096.407Pongo_abelii
ENSMUSG00000028902Sf3a310092.415ENSPCAG00000010734SF3A310092.415Procavia_capensis
ENSMUSG00000028902Sf3a310087.302ENSPCOG00000020389-10087.302Propithecus_coquereli
ENSMUSG00000028902Sf3a310082.236ENSPCOG00000017131-10082.236Propithecus_coquereli
ENSMUSG00000028902Sf3a310086.427ENSPVAG00000010158SF3A310086.427Pteropus_vampyrus
ENSMUSG00000028902Sf3a310091.417ENSPNYG00000000786sf3a310091.417Pundamilia_nyererei
ENSMUSG00000028902Sf3a310091.218ENSPNAG00000010298sf3a310091.218Pygocentrus_nattereri
ENSMUSG00000028902Sf3a3100100.000ENSRNOG00000007629Sf3a3100100.000Rattus_norvegicus
ENSMUSG00000028902Sf3a310072.455ENSRBIG00000041123-10072.655Rhinopithecus_bieti
ENSMUSG00000028902Sf3a310071.657ENSRBIG00000043833-10071.657Rhinopithecus_bieti
ENSMUSG00000028902Sf3a310099.202ENSRBIG00000043567SF3A310099.202Rhinopithecus_bieti
ENSMUSG00000028902Sf3a39479.318ENSRROG00000032346-10079.531Rhinopithecus_roxellana
ENSMUSG00000028902Sf3a310099.202ENSRROG00000033888SF3A310099.202Rhinopithecus_roxellana
ENSMUSG00000028902Sf3a39591.691ENSSBOG00000032688SF3A3100100.000Saimiri_boliviensis_boliviensis
ENSMUSG00000028902Sf3a310071.856ENSSBOG00000026932-10070.259Saimiri_boliviensis_boliviensis
ENSMUSG00000028902Sf3a39098.896ENSSHAG00000014530SF3A310098.896Sarcophilus_harrisii
ENSMUSG00000028902Sf3a310092.814ENSSFOG00015005975sf3a310092.814Scleropages_formosus
ENSMUSG00000028902Sf3a310091.417ENSSMAG00000020213sf3a310091.417Scophthalmus_maximus
ENSMUSG00000028902Sf3a310088.224ENSSDUG00000011590sf3a310088.224Seriola_dumerili
ENSMUSG00000028902Sf3a310092.216ENSSLDG00000020635sf3a310092.216Seriola_lalandi_dorsalis
ENSMUSG00000028902Sf3a310096.008ENSSPUG00000004010SF3A310096.008Sphenodon_punctatus
ENSMUSG00000028902Sf3a310091.816ENSSPAG00000018653sf3a310091.816Stegastes_partitus
ENSMUSG00000028902Sf3a310099.202ENSSSCG00000003643SF3A310099.202Sus_scrofa
ENSMUSG00000028902Sf3a38796.322ENSTGUG00000001466SF3A39996.322Taeniopygia_guttata
ENSMUSG00000028902Sf3a310090.419ENSTRUG00000009089sf3a310090.419Takifugu_rubripes
ENSMUSG00000028902Sf3a310089.662ENSTNIG00000009800sf3a310089.662Tetraodon_nigroviridis
ENSMUSG00000028902Sf3a310086.627ENSTBEG00000007614SF3A310086.627Tupaia_belangeri
ENSMUSG00000028902Sf3a310099.002ENSTTRG00000013519SF3A310099.002Tursiops_truncatus
ENSMUSG00000028902Sf3a310099.202ENSUAMG00000006134SF3A310099.202Ursus_americanus
ENSMUSG00000028902Sf3a310099.202ENSUMAG00000021250SF3A310099.202Ursus_maritimus
ENSMUSG00000028902Sf3a366100.000ENSVPAG00000004778SF3A373100.000Vicugna_pacos
ENSMUSG00000028902Sf3a310095.409ENSVVUG00000022908SF3A310095.409Vulpes_vulpes
ENSMUSG00000028902Sf3a310092.415ENSXETG00000022923sf3a310092.415Xenopus_tropicalis
ENSMUSG00000028902Sf3a310090.419ENSXMAG00000017165sf3a310090.419Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex21873635.IBAComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005686U2 snRNP-ISOComponent
GO:0006397mRNA processing-ISOProcess
GO:0008270zinc ion binding-IEAFunction
GO:0008380RNA splicing-IEAProcess
GO:0016607nuclear speck-ISOComponent
GO:0046872metal ion binding-IEAFunction
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:1903241U2-type prespliceosome assembly-ISOProcess

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