EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000142671	-	699	-	-	- (aa)	-	-
ENSMUST00000219093	-	704	-	-	- (aa)	-	-
ENSMUST00000030893	-	2093	XM_006538517	ENSMUSP00000030893	344 (aa)	XP_006538580	O54788
ENSMUST00000154458	-	408	-	-	- (aa)	-	-
ENSMUST00000133607	-	1634	-	ENSMUSP00000151699	160 (aa)	-	A0A1W2P7L3

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04210	Apoptosis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029027	Dffb	98	77.219	ENSG00000169598	DFFB	100	77.219	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003677	DNA binding	15572351.	IDA	Function
GO:0004518	nuclease activity	15572351.	IDA	Function
GO:0004536	deoxyribonuclease activity	21873635.	IBA	Function
GO:0004536	deoxyribonuclease activity	-	ISO	Function
GO:0005515	protein binding	15572351.22727028.	IPI	Function
GO:0005634	nucleus	15572351.	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006308	DNA catabolic process	-	ISO	Process
GO:0006309	apoptotic DNA fragmentation	21873635.	IBA	Process
GO:0006309	apoptotic DNA fragmentation	15572351.	ISO	Process
GO:0006915	apoptotic process	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030263	apoptotic chromosome condensation	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0051260	protein homooligomerization	-	ISO	Process
GO:0097718	disordered domain specific binding	-	ISO	Function