EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029028 (Gene tree)
Gene ID: 72946
Gene Symbol: Lrrc47
Alias: 2900010D03Rik
Full Name: leucine rich repeat containing 47
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 9783 bases
Position: chr4:154011731-154021513
Accession: 1920196
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000030894	B3_4	PF03483.17	1.5e-09	1	1
ENSMUSP00000133124	B3_4	PF03483.17	1.6e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000163672	-	478	-	ENSMUSP00000126367	79 (aa)	-	F6YT33
ENSMUST00000030894	-	3395	-	ENSMUSP00000030894	581 (aa)	-	Q505F5
ENSMUST00000167947	-	808	-	ENSMUSP00000131382	123 (aa)	-	F6Z4L9
ENSMUST00000142794	-	378	-	-	- (aa)	-	-
ENSMUST00000169622	-	3468	-	ENSMUSP00000133124	603 (aa)	-	E9PV22

Gene Model

Click here to download ENSMUSG00000029028's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029028's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029028	Lrrc47	99	85.911	ENSG00000130764	LRRC47	99	86.678	Homo_sapiens
ENSMUSG00000029028	Lrrc47	97	55.106	ENSAPOG00000019553	lrrc47	98	55.477	Acanthochromis_polyacanthus
ENSMUSG00000029028	Lrrc47	79	76.304	ENSAMEG00000009152	LRRC47	100	76.304	Ailuropoda_melanoleuca
ENSMUSG00000029028	Lrrc47	66	67.358	ENSAPLG00000003167	LRRC47	100	67.098	Anas_platyrhynchos
ENSMUSG00000029028	Lrrc47	65	64.433	ENSACAG00000008267	LRRC47	99	64.858	Anolis_carolinensis
ENSMUSG00000029028	Lrrc47	99	84.708	ENSANAG00000025576	LRRC47	99	85.467	Aotus_nancymaae
ENSMUSG00000029028	Lrrc47	99	81.771	ENSBTAG00000004738	LRRC47	99	82.465	Bos_taurus
ENSMUSG00000029028	Lrrc47	98	80.870	ENSCAFG00000019492	LRRC47	94	80.935	Canis_familiaris
ENSMUSG00000029028	Lrrc47	100	80.479	ENSCAFG00020009667	LRRC47	99	81.109	Canis_lupus_dingo
ENSMUSG00000029028	Lrrc47	99	82.465	ENSCHIG00000022607	LRRC47	98	83.072	Capra_hircus
ENSMUSG00000029028	Lrrc47	95	84.560	ENSTSYG00000009326	LRRC47	96	85.637	Carlito_syrichta
ENSMUSG00000029028	Lrrc47	64	82.447	ENSCAPG00000016517	LRRC47	100	82.447	Cavia_aperea
ENSMUSG00000029028	Lrrc47	99	86.552	ENSCPOG00000014931	LRRC47	100	84.628	Cavia_porcellus
ENSMUSG00000029028	Lrrc47	99	84.880	ENSCCAG00000024895	LRRC47	99	85.640	Cebus_capucinus
ENSMUSG00000029028	Lrrc47	99	87.113	ENSCATG00000029337	LRRC47	99	87.370	Cercocebus_atys
ENSMUSG00000029028	Lrrc47	99	87.241	ENSCLAG00000006093	LRRC47	99	87.500	Chinchilla_lanigera
ENSMUSG00000029028	Lrrc47	99	87.113	ENSCSAG00000000727	LRRC47	99	87.370	Chlorocebus_sabaeus
ENSMUSG00000029028	Lrrc47	99	60.833	ENSCPBG00000019404	LRRC47	98	61.252	Chrysemys_picta_bellii
ENSMUSG00000029028	Lrrc47	78	82.646	ENSCANG00000030701	LRRC47	96	84.382	Colobus_angolensis_palliatus
ENSMUSG00000029028	Lrrc47	98	93.357	ENSCGRG00001015159	Lrrc47	93	91.751	Cricetulus_griseus_chok1gshd
ENSMUSG00000029028	Lrrc47	65	90.981	ENSCGRG00000017336	Lrrc47	100	91.176	Cricetulus_griseus_crigri
ENSMUSG00000029028	Lrrc47	99	53.012	ENSCSEG00000006217	lrrc47	95	53.497	Cynoglossus_semilaevis
ENSMUSG00000029028	Lrrc47	62	80.585	ENSDORG00000016594	Lrrc47	99	80.585	Dipodomys_ordii
ENSMUSG00000029028	Lrrc47	99	82.646	ENSEASG00005021788	LRRC47	99	82.699	Equus_asinus_asinus
ENSMUSG00000029028	Lrrc47	99	82.353	ENSECAG00000022472	LRRC47	90	82.353	Equus_caballus
ENSMUSG00000029028	Lrrc47	99	52.284	ENSELUG00000017544	lrrc47	97	52.911	Esox_lucius
ENSMUSG00000029028	Lrrc47	94	81.353	ENSFCAG00000011632	LRRC47	96	82.267	Felis_catus
ENSMUSG00000029028	Lrrc47	73	65.429	ENSFALG00000009631	LRRC47	99	65.596	Ficedula_albicollis
ENSMUSG00000029028	Lrrc47	97	51.943	ENSGMOG00000015674	lrrc47	97	52.734	Gadus_morhua
ENSMUSG00000029028	Lrrc47	99	61.379	ENSGALG00000050995	LRRC47	100	62.414	Gallus_gallus
ENSMUSG00000029028	Lrrc47	99	53.541	ENSGACG00000005550	lrrc47	99	53.927	Gasterosteus_aculeatus
ENSMUSG00000029028	Lrrc47	99	63.439	ENSGAGG00000022584	LRRC47	99	63.575	Gopherus_agassizii
ENSMUSG00000029028	Lrrc47	99	85.911	ENSGGOG00000015571	LRRC47	99	86.678	Gorilla_gorilla
ENSMUSG00000029028	Lrrc47	99	85.000	ENSHGLG00000018278	LRRC47	100	83.306	Heterocephalus_glaber_female
ENSMUSG00000029028	Lrrc47	69	81.141	ENSHGLG00100008507	LRRC47	100	81.141	Heterocephalus_glaber_male
ENSMUSG00000029028	Lrrc47	99	54.593	ENSHCOG00000006348	lrrc47	97	54.073	Hippocampus_comes
ENSMUSG00000029028	Lrrc47	99	85.172	ENSSTOG00000027559	LRRC47	99	86.979	Ictidomys_tridecemlineatus
ENSMUSG00000029028	Lrrc47	99	88.174	ENSJJAG00000017474	Lrrc47	99	87.310	Jaculus_jaculus
ENSMUSG00000029028	Lrrc47	99	54.217	ENSKMAG00000003414	lrrc47	99	54.167	Kryptolebias_marmoratus
ENSMUSG00000029028	Lrrc47	99	80.651	ENSLAFG00000011657	LRRC47	99	82.353	Loxodonta_africana
ENSMUSG00000029028	Lrrc47	74	95.610	ENSMFAG00000045730	LRRC47	99	95.610	Macaca_fascicularis
ENSMUSG00000029028	Lrrc47	99	87.543	ENSMNEG00000042488	LRRC47	99	87.543	Macaca_nemestrina
ENSMUSG00000029028	Lrrc47	76	81.153	ENSMLEG00000043735	LRRC47	91	82.927	Mandrillus_leucophaeus
ENSMUSG00000029028	Lrrc47	99	93.750	ENSMAUG00000021337	Lrrc47	99	92.617	Mesocricetus_auratus
ENSMUSG00000029028	Lrrc47	99	84.682	ENSMICG00000026816	LRRC47	99	84.749	Microcebus_murinus
ENSMUSG00000029028	Lrrc47	99	94.118	ENSMOCG00000021279	Lrrc47	99	94.251	Microtus_ochrogaster
ENSMUSG00000029028	Lrrc47	99	52.941	ENSMMOG00000017007	lrrc47	99	53.217	Mola_mola
ENSMUSG00000029028	Lrrc47	98	70.979	ENSMODG00000006554	LRRC47	98	70.979	Monodelphis_domestica
ENSMUSG00000029028	Lrrc47	100	99.337	MGP_CAROLIEiJ_G0026864	Lrrc47	100	99.337	Mus_caroli
ENSMUSG00000029028	Lrrc47	100	98.107	MGP_PahariEiJ_G0029212	Lrrc47	100	98.107	Mus_pahari
ENSMUSG00000029028	Lrrc47	100	99.503	MGP_SPRETEiJ_G0027857	Lrrc47	100	99.503	Mus_spretus
ENSMUSG00000029028	Lrrc47	65	74.074	ENSMPUG00000007321	LRRC47	75	74.074	Mustela_putorius_furo
ENSMUSG00000029028	Lrrc47	98	90.526	ENSNGAG00000022153	Lrrc47	99	91.115	Nannospalax_galili
ENSMUSG00000029028	Lrrc47	99	82.131	ENSNLEG00000008131	LRRC47	99	82.872	Nomascus_leucogenys
ENSMUSG00000029028	Lrrc47	84	84.254	ENSODEG00000010882	LRRC47	93	84.254	Octodon_degus
ENSMUSG00000029028	Lrrc47	96	57.016	ENSORLG00000002532	lrrc47	99	56.912	Oryzias_latipes
ENSMUSG00000029028	Lrrc47	99	56.971	ENSORLG00020019601	lrrc47	99	56.870	Oryzias_latipes_hni
ENSMUSG00000029028	Lrrc47	99	56.282	ENSORLG00015014040	lrrc47	99	56.174	Oryzias_latipes_hsok
ENSMUSG00000029028	Lrrc47	99	55.536	ENSOMEG00000008989	lrrc47	99	55.652	Oryzias_melastigma
ENSMUSG00000029028	Lrrc47	99	84.021	ENSOGAG00000001553	LRRC47	99	83.737	Otolemur_garnettii
ENSMUSG00000029028	Lrrc47	99	78.646	ENSOARG00000015290	LRRC47	99	79.340	Ovis_aries
ENSMUSG00000029028	Lrrc47	97	81.967	ENSPPAG00000036370	-	99	82.904	Pan_paniscus
ENSMUSG00000029028	Lrrc47	99	80.416	ENSPPRG00000005261	LRRC47	98	81.456	Panthera_pardus
ENSMUSG00000029028	Lrrc47	99	85.911	ENSPTRG00000000068	LRRC47	99	86.678	Pan_troglodytes
ENSMUSG00000029028	Lrrc47	99	87.113	ENSPANG00000012437	LRRC47	99	87.370	Papio_anubis
ENSMUSG00000029028	Lrrc47	65	65.699	ENSPSIG00000004196	LRRC47	100	65.699	Pelodiscus_sinensis
ENSMUSG00000029028	Lrrc47	64	94.385	ENSPEMG00000021068	Lrrc47	100	94.385	Peromyscus_maniculatus_bairdii
ENSMUSG00000029028	Lrrc47	98	72.154	ENSPCIG00000003638	LRRC47	98	73.822	Phascolarctos_cinereus
ENSMUSG00000029028	Lrrc47	90	56.622	ENSPFOG00000000992	lrrc47	90	56.731	Poecilia_formosa
ENSMUSG00000029028	Lrrc47	99	55.035	ENSPLAG00000008077	lrrc47	99	55.130	Poecilia_latipinna
ENSMUSG00000029028	Lrrc47	99	54.957	ENSPMEG00000007367	lrrc47	99	55.130	Poecilia_mexicana
ENSMUSG00000029028	Lrrc47	99	85.739	ENSPPYG00000001960	LRRC47	99	86.505	Pongo_abelii
ENSMUSG00000029028	Lrrc47	99	85.269	ENSPCOG00000019161	LRRC47	99	85.269	Propithecus_coquereli
ENSMUSG00000029028	Lrrc47	99	80.412	ENSPVAG00000009839	LRRC47	99	81.488	Pteropus_vampyrus
ENSMUSG00000029028	Lrrc47	99	53.859	ENSPNAG00000017982	lrrc47	98	54.087	Pygocentrus_nattereri
ENSMUSG00000029028	Lrrc47	99	95.682	ENSRNOG00000024796	Lrrc47	99	95.645	Rattus_norvegicus
ENSMUSG00000029028	Lrrc47	99	87.113	ENSRBIG00000019437	LRRC47	99	87.370	Rhinopithecus_bieti
ENSMUSG00000029028	Lrrc47	99	87.113	ENSRROG00000043182	LRRC47	99	87.370	Rhinopithecus_roxellana
ENSMUSG00000029028	Lrrc47	91	79.789	ENSSBOG00000026334	LRRC47	97	80.632	Saimiri_boliviensis_boliviensis
ENSMUSG00000029028	Lrrc47	98	60.103	ENSSHAG00000007360	LRRC47	98	60.342	Sarcophilus_harrisii
ENSMUSG00000029028	Lrrc47	98	54.404	ENSSMAG00000009344	lrrc47	99	54.704	Scophthalmus_maximus
ENSMUSG00000029028	Lrrc47	97	54.787	ENSSDUG00000014618	lrrc47	97	55.319	Seriola_dumerili
ENSMUSG00000029028	Lrrc47	97	55.142	ENSSLDG00000018908	lrrc47	97	55.142	Seriola_lalandi_dorsalis
ENSMUSG00000029028	Lrrc47	100	61.642	ENSSPUG00000010277	LRRC47	96	62.852	Sphenodon_punctatus
ENSMUSG00000029028	Lrrc47	99	55.882	ENSSPAG00000005188	lrrc47	99	56.424	Stegastes_partitus
ENSMUSG00000029028	Lrrc47	99	80.928	ENSSSCG00000039516	LRRC47	99	82.007	Sus_scrofa
ENSMUSG00000029028	Lrrc47	70	65.764	ENSTGUG00000002737	LRRC47	99	65.025	Taeniopygia_guttata
ENSMUSG00000029028	Lrrc47	99	52.870	ENSTRUG00000017696	lrrc47	99	52.972	Takifugu_rubripes
ENSMUSG00000029028	Lrrc47	99	52.778	ENSTNIG00000010923	lrrc47	99	52.972	Tetraodon_nigroviridis
ENSMUSG00000029028	Lrrc47	99	81.100	ENSTTRG00000011751	LRRC47	99	82.038	Tursiops_truncatus
ENSMUSG00000029028	Lrrc47	88	78.947	ENSUAMG00000012080	LRRC47	97	80.117	Ursus_americanus
ENSMUSG00000029028	Lrrc47	65	72.703	ENSUMAG00000010781	LRRC47	81	74.278	Ursus_maritimus
ENSMUSG00000029028	Lrrc47	99	72.789	ENSVVUG00000027118	LRRC47	98	71.626	Vulpes_vulpes
ENSMUSG00000029028	Lrrc47	99	60.172	ENSXETG00000006029	lrrc47	99	60.104	Xenopus_tropicalis
ENSMUSG00000029028	Lrrc47	98	55.088	ENSXCOG00000002813	lrrc47	98	55.088	Xiphophorus_couchianus
ENSMUSG00000029028	Lrrc47	98	54.895	ENSXMAG00000019386	lrrc47	99	55.672	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0004826	phenylalanine-tRNA ligase activity	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process