EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029227 (Gene tree)
Gene ID: 66899
Gene Symbol: Fip1l1
Alias: 1300019H17Rik|Rje
Full Name: FIP1 like 1 (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 63352 bases
Position: chr5:74535449-74598800
Accession: 1914149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000113995	Fip1	PF05182.13	6.9e-25	1	1
ENSMUSP00000109162	Fip1	PF05182.13	1.7e-24	1	1
ENSMUSP00000109163	Fip1	PF05182.13	1.8e-24	1	1
ENSMUSP00000079059	Fip1	PF05182.13	1.9e-24	1	1
ENSMUSP00000109164	Fip1	PF05182.13	2e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000200787	-	586	-	-	- (aa)	-	-
ENSMUST00000201310	-	2290	-	-	- (aa)	-	-
ENSMUST00000135377	-	4987	-	-	- (aa)	-	-
ENSMUST00000200979	-	603	-	-	- (aa)	-	-
ENSMUST00000202499	-	425	-	-	- (aa)	-	-
ENSMUST00000139697	-	540	-	-	- (aa)	-	-
ENSMUST00000080164	-	4673	XM_006504266	ENSMUSP00000079059	545 (aa)	XP_006504329	Q9D824
ENSMUST00000120618	-	1480	-	ENSMUSP00000113995	434 (aa)	-	D3Z3F1
ENSMUST00000113534	-	2140	-	ENSMUSP00000109162	508 (aa)	-	Q9D824
ENSMUST00000113535	-	1969	XM_006504267	ENSMUSP00000109163	536 (aa)	XP_006504330	Q9D824
ENSMUST00000113536	-	4769	XM_006504264	ENSMUSP00000109164	581 (aa)	XP_006504327	Q9D824
ENSMUST00000125129	-	584	-	-	- (aa)	-	-
ENSMUST00000121950	-	1445	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000029227's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029227	Fip1l1	72	78.947	ENSACIG00000001454	fip1l1b	73	67.196	Amphilophus_citrinellus
ENSMUSG00000029227	Fip1l1	99	57.143	ENSAOCG00000021043	fip1l1b	84	60.168	Amphiprion_ocellaris
ENSMUSG00000029227	Fip1l1	99	57.143	ENSAPEG00000022229	fip1l1b	84	60.168	Amphiprion_percula
ENSMUSG00000029227	Fip1l1	99	60.993	ENSATEG00000021757	fip1l1b	83	62.309	Anabas_testudineus
ENSMUSG00000029227	Fip1l1	90	82.908	ENSAPLG00000003042	-	98	74.955	Anas_platyrhynchos
ENSMUSG00000029227	Fip1l1	90	89.967	ENSACAG00000010556	-	97	80.492	Anolis_carolinensis
ENSMUSG00000029227	Fip1l1	99	59.892	ENSACLG00000010418	fip1l1b	83	61.002	Astatotilapia_calliptera
ENSMUSG00000029227	Fip1l1	59	39.818	ENSAMXG00000031045	fip1l1a	54	50.526	Astyanax_mexicanus
ENSMUSG00000029227	Fip1l1	79	52.355	ENSAMXG00000011126	fip1l1b	74	63.025	Astyanax_mexicanus
ENSMUSG00000029227	Fip1l1	100	92.870	ENSBTAG00000020653	FIP1L1	100	92.139	Bos_taurus
ENSMUSG00000029227	Fip1l1	100	91.930	ENSCHIG00000025903	-	100	91.228	Capra_hircus
ENSMUSG00000029227	Fip1l1	91	85.991	ENSCAPG00000009569	-	98	88.713	Cavia_aperea
ENSMUSG00000029227	Fip1l1	96	96.768	ENSCPOG00000010770	-	100	95.871	Cavia_porcellus
ENSMUSG00000029227	Fip1l1	100	89.037	ENSCPBG00000025019	-	94	89.881	Chrysemys_picta_bellii
ENSMUSG00000029227	Fip1l1	100	98.795	ENSCGRG00001018568	Fip1l1	100	98.795	Cricetulus_griseus_chok1gshd
ENSMUSG00000029227	Fip1l1	100	98.795	ENSCGRG00000000208	Fip1l1	100	98.795	Cricetulus_griseus_crigri
ENSMUSG00000029227	Fip1l1	99	58.951	ENSCSEG00000006583	fip1l1b	83	63.158	Cynoglossus_semilaevis
ENSMUSG00000029227	Fip1l1	99	60.323	ENSCVAG00000023435	fip1l1b	83	60.870	Cyprinodon_variegatus
ENSMUSG00000029227	Fip1l1	90	75.325	ENSETEG00000018271	-	100	75.325	Echinops_telfairi
ENSMUSG00000029227	Fip1l1	52	42.735	ENSEBUG00000016765	-	84	60.504	Eptatretus_burgeri
ENSMUSG00000029227	Fip1l1	100	91.667	ENSEASG00005019566	-	100	91.061	Equus_asinus_asinus
ENSMUSG00000029227	Fip1l1	88	92.428	ENSEEUG00000004965	-	71	95.489	Erinaceus_europaeus
ENSMUSG00000029227	Fip1l1	97	60.073	ENSFHEG00000003843	fip1l1b	70	61.558	Fundulus_heteroclitus
ENSMUSG00000029227	Fip1l1	74	32.626	ENSGMOG00000012065	-	53	41.053	Gadus_morhua
ENSMUSG00000029227	Fip1l1	99	51.370	ENSGMOG00000004913	fip1l1b	74	53.012	Gadus_morhua
ENSMUSG00000029227	Fip1l1	100	82.234	ENSGALG00000013943	-	100	82.234	Gallus_gallus
ENSMUSG00000029227	Fip1l1	52	46.025	ENSGALG00000007683	-	98	61.111	Gallus_gallus
ENSMUSG00000029227	Fip1l1	98	51.770	ENSGAFG00000008253	fip1l1b	82	60.814	Gambusia_affinis
ENSMUSG00000029227	Fip1l1	99	52.310	ENSGACG00000015946	fip1l1b	86	55.577	Gasterosteus_aculeatus
ENSMUSG00000029227	Fip1l1	100	89.037	ENSGAGG00000009763	-	93	89.881	Gopherus_agassizii
ENSMUSG00000029227	Fip1l1	71	42.012	ENSGAGG00000017677	-	69	52.549	Gopherus_agassizii
ENSMUSG00000029227	Fip1l1	99	59.892	ENSHBUG00000013978	fip1l1b	87	59.329	Haplochromis_burtoni
ENSMUSG00000029227	Fip1l1	99	60.357	ENSHCOG00000015834	fip1l1b	69	64.691	Hippocampus_comes
ENSMUSG00000029227	Fip1l1	96	53.160	ENSIPUG00000022454	fip1l1b	88	50.693	Ictalurus_punctatus
ENSMUSG00000029227	Fip1l1	99	57.979	ENSKMAG00000021938	fip1l1b	83	60.566	Kryptolebias_marmoratus
ENSMUSG00000029227	Fip1l1	99	56.545	ENSLBEG00000028819	fip1l1b	83	62.526	Labrus_bergylta
ENSMUSG00000029227	Fip1l1	100	68.885	ENSLACG00000011991	fip1l1a	97	62.136	Latimeria_chalumnae
ENSMUSG00000029227	Fip1l1	99	59.005	ENSLOCG00000014127	fip1l1b	92	60.192	Lepisosteus_oculatus
ENSMUSG00000029227	Fip1l1	99	58.393	ENSMAMG00000004535	fip1l1b	83	61.354	Mastacembelus_armatus
ENSMUSG00000029227	Fip1l1	99	59.892	ENSMZEG00005023828	fip1l1b	83	61.002	Maylandia_zebra
ENSMUSG00000029227	Fip1l1	90	85.685	ENSMGAG00000011885	-	97	85.685	Meleagris_gallopavo
ENSMUSG00000029227	Fip1l1	100	93.460	ENSMAUG00000010526	Fip1l1	100	93.460	Mesocricetus_auratus
ENSMUSG00000029227	Fip1l1	100	98.321	ENSMOCG00000008020	Fip1l1	100	98.321	Microtus_ochrogaster
ENSMUSG00000029227	Fip1l1	100	92.414	ENSMODG00000020654	-	93	85.178	Monodelphis_domestica
ENSMUSG00000029227	Fip1l1	98	43.187	ENSMALG00000000838	fip1l1b	79	61.386	Monopterus_albus
ENSMUSG00000029227	Fip1l1	100	100.000	MGP_CAROLIEiJ_G0027304	Fip1l1	100	100.000	Mus_caroli
ENSMUSG00000029227	Fip1l1	100	100.000	MGP_PahariEiJ_G0017085	Fip1l1	100	100.000	Mus_pahari
ENSMUSG00000029227	Fip1l1	100	100.000	MGP_SPRETEiJ_G0028299	Fip1l1	100	100.000	Mus_spretus
ENSMUSG00000029227	Fip1l1	100	98.349	ENSNGAG00000008849	Fip1l1	100	98.349	Nannospalax_galili
ENSMUSG00000029227	Fip1l1	99	58.188	ENSNBRG00000017832	fip1l1b	84	58.910	Neolamprologus_brichardi
ENSMUSG00000029227	Fip1l1	74	63.889	ENSMEUG00000012782	-	69	89.655	Notamacropus_eugenii
ENSMUSG00000029227	Fip1l1	99	57.840	ENSONIG00000008785	fip1l1b	84	58.491	Oreochromis_niloticus
ENSMUSG00000029227	Fip1l1	57	45.669	ENSOANG00000002812	-	91	58.209	Ornithorhynchus_anatinus
ENSMUSG00000029227	Fip1l1	91	86.466	ENSOANG00000003384	-	98	75.179	Ornithorhynchus_anatinus
ENSMUSG00000029227	Fip1l1	99	60.541	ENSORLG00000004397	fip1l1b	83	60.480	Oryzias_latipes
ENSMUSG00000029227	Fip1l1	99	60.901	ENSORLG00020008716	fip1l1b	83	60.699	Oryzias_latipes_hni
ENSMUSG00000029227	Fip1l1	99	61.081	ENSORLG00015006736	fip1l1b	99	56.396	Oryzias_latipes_hsok
ENSMUSG00000029227	Fip1l1	99	46.632	ENSOMEG00000015730	fip1l1b	83	47.537	Oryzias_melastigma
ENSMUSG00000029227	Fip1l1	95	91.573	ENSOARG00000018767	-	100	90.824	Ovis_aries
ENSMUSG00000029227	Fip1l1	100	54.255	ENSPKIG00000003396	fip1l1b	55	51.402	Paramormyrops_kingsleyae
ENSMUSG00000029227	Fip1l1	100	98.623	ENSPEMG00000002025	Fip1l1	100	98.623	Peromyscus_maniculatus_bairdii
ENSMUSG00000029227	Fip1l1	76	88.485	ENSPCIG00000019318	-	97	87.869	Phascolarctos_cinereus
ENSMUSG00000029227	Fip1l1	99	57.293	ENSPFOG00000014745	fip1l1b	83	60.256	Poecilia_formosa
ENSMUSG00000029227	Fip1l1	99	56.140	ENSPLAG00000010954	fip1l1b	69	62.183	Poecilia_latipinna
ENSMUSG00000029227	Fip1l1	99	57.469	ENSPMEG00000019187	fip1l1b	83	60.470	Poecilia_mexicana
ENSMUSG00000029227	Fip1l1	98	44.213	ENSPREG00000012535	fip1l1b	62	64.388	Poecilia_reticulata
ENSMUSG00000029227	Fip1l1	70	98.214	ENSPVAG00000000716	-	71	98.214	Pteropus_vampyrus
ENSMUSG00000029227	Fip1l1	79	50.411	ENSPNYG00000015976	fip1l1b	58	64.091	Pundamilia_nyererei
ENSMUSG00000029227	Fip1l1	59	43.260	ENSPNAG00000009853	fip1l1a	53	52.128	Pygocentrus_nattereri
ENSMUSG00000029227	Fip1l1	83	52.139	ENSPNAG00000015341	fip1l1b	69	58.147	Pygocentrus_nattereri
ENSMUSG00000029227	Fip1l1	100	100.000	ENSRNOG00000002275	Fip1l1	100	100.000	Rattus_norvegicus
ENSMUSG00000029227	Fip1l1	94	88.725	ENSSHAG00000015789	-	98	83.713	Sarcophilus_harrisii
ENSMUSG00000029227	Fip1l1	91	55.709	ENSSFOG00015017653	fip1l1b	61	48.634	Scleropages_formosus
ENSMUSG00000029227	Fip1l1	72	43.887	ENSSFOG00015010948	-	55	58.252	Scleropages_formosus
ENSMUSG00000029227	Fip1l1	99	58.750	ENSSMAG00000013444	fip1l1b	83	65.066	Scophthalmus_maximus
ENSMUSG00000029227	Fip1l1	99	59.066	ENSSDUG00000004117	fip1l1b	83	61.656	Seriola_dumerili
ENSMUSG00000029227	Fip1l1	99	59.532	ENSSLDG00000024099	fip1l1b	83	66.157	Seriola_lalandi_dorsalis
ENSMUSG00000029227	Fip1l1	88	92.784	ENSSARG00000001973	-	89	92.784	Sorex_araneus
ENSMUSG00000029227	Fip1l1	75	60.494	ENSSPUG00000017328	-	92	73.929	Sphenodon_punctatus
ENSMUSG00000029227	Fip1l1	99	56.969	ENSSPAG00000017564	fip1l1b	84	59.539	Stegastes_partitus
ENSMUSG00000029227	Fip1l1	90	82.645	ENSTGUG00000007834	-	97	83.471	Taeniopygia_guttata
ENSMUSG00000029227	Fip1l1	99	53.607	ENSTNIG00000004104	fip1l1b	83	50.000	Tetraodon_nigroviridis
ENSMUSG00000029227	Fip1l1	72	93.210	ENSTBEG00000007839	-	82	90.741	Tupaia_belangeri
ENSMUSG00000029227	Fip1l1	91	94.962	ENSUMAG00000002758	-	99	93.182	Ursus_maritimus
ENSMUSG00000029227	Fip1l1	85	96.569	ENSVPAG00000011574	-	90	96.569	Vicugna_pacos
ENSMUSG00000029227	Fip1l1	92	73.194	ENSXETG00000011679	fip1l1	81	73.810	Xenopus_tropicalis
ENSMUSG00000029227	Fip1l1	99	59.358	ENSXMAG00000017620	fip1l1b	83	60.814	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005515	protein binding	19224921.	IPI	Function
GO:0005634	nucleus	19224921.	IDA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	19224921.	IDA	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	19224921.	IC	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process