EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029275 (Gene tree)
Gene ID: 14581
Gene Symbol: Gfi1
Alias: Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1 transcription repressor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 9380 bases
Position: chr5:107716657-107726036
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000135884	zf-C2H2	PF00096.26	6.4e-28	1	6
ENSMUSP00000135884	zf-C2H2	PF00096.26	6.4e-28	2	6
ENSMUSP00000135884	zf-C2H2	PF00096.26	6.4e-28	3	6
ENSMUSP00000135884	zf-C2H2	PF00096.26	6.4e-28	4	6
ENSMUSP00000135884	zf-C2H2	PF00096.26	6.4e-28	5	6
ENSMUSP00000135884	zf-C2H2	PF00096.26	6.4e-28	6	6
ENSMUSP00000137229	zf-C2H2	PF00096.26	6.4e-28	1	6
ENSMUSP00000137229	zf-C2H2	PF00096.26	6.4e-28	2	6
ENSMUSP00000137229	zf-C2H2	PF00096.26	6.4e-28	3	6
ENSMUSP00000137229	zf-C2H2	PF00096.26	6.4e-28	4	6
ENSMUSP00000137229	zf-C2H2	PF00096.26	6.4e-28	5	6
ENSMUSP00000137229	zf-C2H2	PF00096.26	6.4e-28	6	6
ENSMUSP00000135039	zf-C2H2	PF00096.26	1.9e-27	1	6
ENSMUSP00000135039	zf-C2H2	PF00096.26	1.9e-27	2	6
ENSMUSP00000135039	zf-C2H2	PF00096.26	1.9e-27	3	6
ENSMUSP00000135039	zf-C2H2	PF00096.26	1.9e-27	4	6
ENSMUSP00000135039	zf-C2H2	PF00096.26	1.9e-27	5	6
ENSMUSP00000135039	zf-C2H2	PF00096.26	1.9e-27	6	6
ENSMUSP00000135884	zf-met	PF12874.7	3.2e-07	1	1
ENSMUSP00000137229	zf-met	PF12874.7	3.2e-07	1	1
ENSMUSP00000135039	zf-met	PF12874.7	5.3e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000031205	-	2860	XM_006534791	ENSMUSP00000135884	423 (aa)	XP_006534854	A0A0R4J292
ENSMUST00000159164	-	2648	-	ENSMUSP00000137229	423 (aa)	-	A0A0R4J292
ENSMUST00000065478	-	2639	-	ENSMUSP00000135039	489 (aa)	-	H3BJM0
ENSMUST00000159263	-	689	-	ENSMUSP00000135880	186 (aa)	-	H3BLQ9

Gene Model

Click here to download ENSMUSG00000029275's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029275	Gfi1	100	87.470	ENSG00000162676	GFI1	100	87.470	Homo_sapiens
ENSMUSG00000029275	Gfi1	100	62.150	ENSAPOG00000015189	gfi1ab	100	62.383	Acanthochromis_polyacanthus
ENSMUSG00000029275	Gfi1	100	62.588	ENSACIG00000016354	gfi1ab	100	62.763	Amphilophus_citrinellus
ENSMUSG00000029275	Gfi1	100	53.864	ENSAOCG00000008339	gfi1ab	100	54.098	Amphiprion_ocellaris
ENSMUSG00000029275	Gfi1	100	62.850	ENSAPEG00000023870	gfi1ab	100	63.084	Amphiprion_percula
ENSMUSG00000029275	Gfi1	100	59.670	ENSATEG00000009167	gfi1ab	91	57.541	Anabas_testudineus
ENSMUSG00000029275	Gfi1	88	72.922	ENSAPLG00000015700	GFI1	100	72.922	Anas_platyrhynchos
ENSMUSG00000029275	Gfi1	100	70.208	ENSACAG00000004498	GFI1	100	70.439	Anolis_carolinensis
ENSMUSG00000029275	Gfi1	100	85.579	ENSANAG00000019656	GFI1	100	85.579	Aotus_nancymaae
ENSMUSG00000029275	Gfi1	100	62.850	ENSACLG00000026458	gfi1ab	93	62.383	Astatotilapia_calliptera
ENSMUSG00000029275	Gfi1	100	57.569	ENSAMXG00000039600	gfi1ab	100	57.110	Astyanax_mexicanus
ENSMUSG00000029275	Gfi1	63	47.766	ENSAMXG00000015228	-	63	58.000	Astyanax_mexicanus
ENSMUSG00000029275	Gfi1	100	87.568	ENSAMXG00000006669	GFI1	100	87.568	Astyanax_mexicanus
ENSMUSG00000029275	Gfi1	100	86.761	ENSBTAG00000016723	GFI1	100	86.761	Bos_taurus
ENSMUSG00000029275	Gfi1	100	84.634	ENSCJAG00000017609	GFI1	100	84.634	Callithrix_jacchus
ENSMUSG00000029275	Gfi1	100	87.234	ENSCAFG00000020155	GFI1	100	87.234	Canis_familiaris
ENSMUSG00000029275	Gfi1	100	87.234	ENSCAFG00020013371	GFI1	98	81.198	Canis_lupus_dingo
ENSMUSG00000029275	Gfi1	100	86.288	ENSCHIG00000016135	GFI1	100	86.288	Capra_hircus
ENSMUSG00000029275	Gfi1	100	86.998	ENSCPOG00000011727	GFI1	100	89.125	Cavia_porcellus
ENSMUSG00000029275	Gfi1	100	85.579	ENSCCAG00000036072	GFI1	100	85.579	Cebus_capucinus
ENSMUSG00000029275	Gfi1	100	86.998	ENSCATG00000037873	GFI1	100	86.998	Cercocebus_atys
ENSMUSG00000029275	Gfi1	100	84.397	ENSCLAG00000005915	GFI1	100	82.989	Chinchilla_lanigera
ENSMUSG00000029275	Gfi1	86	85.205	ENSCSAG00000001469	GFI1	100	85.205	Chlorocebus_sabaeus
ENSMUSG00000029275	Gfi1	100	87.234	ENSCANG00000034077	GFI1	100	87.234	Colobus_angolensis_palliatus
ENSMUSG00000029275	Gfi1	100	92.199	ENSCGRG00001015432	Gfi1	100	92.199	Cricetulus_griseus_chok1gshd
ENSMUSG00000029275	Gfi1	100	57.110	ENSCSEG00000017729	GFI1	100	57.241	Cynoglossus_semilaevis
ENSMUSG00000029275	Gfi1	100	59.535	ENSCVAG00000011828	gfi1ab	100	59.070	Cyprinodon_variegatus
ENSMUSG00000029275	Gfi1	100	59.165	ENSCVAG00000004930	GFI1	100	60.789	Cyprinodon_variegatus
ENSMUSG00000029275	Gfi1	100	62.617	ENSDARG00000044457	gfi1ab	100	62.617	Danio_rerio
ENSMUSG00000029275	Gfi1	100	84.670	ENSDNOG00000000782	GFI1	97	86.824	Dasypus_novemcinctus
ENSMUSG00000029275	Gfi1	100	83.529	ENSEBUG00000008075	gfi1ab	57	83.529	Eptatretus_burgeri
ENSMUSG00000029275	Gfi1	100	86.288	ENSEASG00005015509	GFI1	100	80.894	Equus_asinus_asinus
ENSMUSG00000029275	Gfi1	86	83.562	ENSECAG00000006647	GFI1	92	80.000	Equus_caballus
ENSMUSG00000029275	Gfi1	100	79.905	ENSEEUG00000000198	GFI1	100	80.615	Erinaceus_europaeus
ENSMUSG00000029275	Gfi1	100	64.037	ENSELUG00000003015	gfi1ab	99	62.877	Esox_lucius
ENSMUSG00000029275	Gfi1	100	57.746	ENSELUG00000019033	GFI1	100	57.275	Esox_lucius
ENSMUSG00000029275	Gfi1	100	87.707	ENSFCAG00000005914	GFI1	100	87.707	Felis_catus
ENSMUSG00000029275	Gfi1	100	61.163	ENSFHEG00000010997	gfi1ab	100	59.674	Fundulus_heteroclitus
ENSMUSG00000029275	Gfi1	100	58.430	ENSFHEG00000000341	GFI1	100	59.770	Fundulus_heteroclitus
ENSMUSG00000029275	Gfi1	100	61.124	ENSGMOG00000007737	gfi1ab	100	61.124	Gadus_morhua
ENSMUSG00000029275	Gfi1	100	71.694	ENSGALG00000043650	GFI1	100	71.694	Gallus_gallus
ENSMUSG00000029275	Gfi1	100	60.417	ENSGAFG00000016637	gfi1ab	100	59.722	Gambusia_affinis
ENSMUSG00000029275	Gfi1	100	60.325	ENSGAFG00000018063	GFI1	100	59.954	Gambusia_affinis
ENSMUSG00000029275	Gfi1	100	61.647	ENSGACG00000004257	gfi1ab	97	61.647	Gasterosteus_aculeatus
ENSMUSG00000029275	Gfi1	100	87.470	ENSGGOG00000005320	GFI1	100	87.470	Gorilla_gorilla
ENSMUSG00000029275	Gfi1	100	63.380	ENSHBUG00000011969	gfi1ab	100	62.676	Haplochromis_burtoni
ENSMUSG00000029275	Gfi1	100	88.889	ENSHGLG00000008020	GFI1	100	88.889	Heterocephalus_glaber_female
ENSMUSG00000029275	Gfi1	100	88.889	ENSHGLG00100000610	GFI1	100	88.889	Heterocephalus_glaber_male
ENSMUSG00000029275	Gfi1	100	52.784	ENSHCOG00000008590	gfi1ab	100	51.448	Hippocampus_comes
ENSMUSG00000029275	Gfi1	100	56.368	ENSHCOG00000019555	GFI1	100	56.368	Hippocampus_comes
ENSMUSG00000029275	Gfi1	100	61.215	ENSIPUG00000010071	gfi1ab	87	60.829	Ictalurus_punctatus
ENSMUSG00000029275	Gfi1	100	59.155	ENSIPUG00000013414	GFI1	100	57.309	Ictalurus_punctatus
ENSMUSG00000029275	Gfi1	100	87.470	ENSSTOG00000014583	GFI1	100	87.470	Ictidomys_tridecemlineatus
ENSMUSG00000029275	Gfi1	100	59.953	ENSKMAG00000003810	gfi1ab	100	59.719	Kryptolebias_marmoratus
ENSMUSG00000029275	Gfi1	100	62.998	ENSLBEG00000027776	gfi1ab	100	62.763	Labrus_bergylta
ENSMUSG00000029275	Gfi1	99	77.222	ENSLACG00000017590	-	55	77.222	Latimeria_chalumnae
ENSMUSG00000029275	Gfi1	100	68.692	ENSLACG00000013362	GFI1	99	68.349	Latimeria_chalumnae
ENSMUSG00000029275	Gfi1	100	65.116	ENSLOCG00000004711	gfi1ab	100	64.977	Lepisosteus_oculatus
ENSMUSG00000029275	Gfi1	100	80.142	ENSLAFG00000018346	GFI1	100	80.142	Loxodonta_africana
ENSMUSG00000029275	Gfi1	100	86.998	ENSMFAG00000045801	GFI1	100	86.998	Macaca_fascicularis
ENSMUSG00000029275	Gfi1	100	86.998	ENSMNEG00000036338	GFI1	100	86.998	Macaca_nemestrina
ENSMUSG00000029275	Gfi1	100	86.998	ENSMLEG00000036181	GFI1	100	86.998	Mandrillus_leucophaeus
ENSMUSG00000029275	Gfi1	100	62.911	ENSMAMG00000008125	gfi1ab	100	62.207	Mastacembelus_armatus
ENSMUSG00000029275	Gfi1	100	63.084	ENSMZEG00005009895	gfi1ab	100	62.617	Maylandia_zebra
ENSMUSG00000029275	Gfi1	87	74.054	ENSMGAG00000008187	GFI1	99	74.054	Meleagris_gallopavo
ENSMUSG00000029275	Gfi1	100	87.707	ENSMICG00000047208	GFI1	100	87.707	Microcebus_murinus
ENSMUSG00000029275	Gfi1	100	57.176	ENSMMOG00000005556	gfi1ab	100	56.235	Mola_mola
ENSMUSG00000029275	Gfi1	100	75.515	ENSMODG00000011802	GFI1	100	75.744	Monodelphis_domestica
ENSMUSG00000029275	Gfi1	100	62.028	ENSMALG00000014672	gfi1ab	100	61.557	Monopterus_albus
ENSMUSG00000029275	Gfi1	100	98.818	MGP_CAROLIEiJ_G0027508	Gfi1	100	100.000	Mus_caroli
ENSMUSG00000029275	Gfi1	100	97.872	MGP_PahariEiJ_G0017280	Gfi1	100	100.000	Mus_pahari
ENSMUSG00000029275	Gfi1	100	99.054	MGP_SPRETEiJ_G0028507	Gfi1	100	99.054	Mus_spretus
ENSMUSG00000029275	Gfi1	100	78.723	ENSMPUG00000004178	GFI1	98	79.625	Mustela_putorius_furo
ENSMUSG00000029275	Gfi1	100	84.000	ENSMLUG00000015191	GFI1	98	83.450	Myotis_lucifugus
ENSMUSG00000029275	Gfi1	100	61.379	ENSNBRG00000015774	gfi1ab	100	60.920	Neolamprologus_brichardi
ENSMUSG00000029275	Gfi1	93	85.459	ENSNLEG00000010470	GFI1	97	85.459	Nomascus_leucogenys
ENSMUSG00000029275	Gfi1	100	86.525	ENSOPRG00000001473	GFI1	100	86.525	Ochotona_princeps
ENSMUSG00000029275	Gfi1	100	62.850	ENSONIG00000019246	gfi1ab	100	62.383	Oreochromis_niloticus
ENSMUSG00000029275	Gfi1	87	82.834	ENSOCUG00000023553	GFI1	93	83.924	Oryctolagus_cuniculus
ENSMUSG00000029275	Gfi1	100	60.656	ENSORLG00000013806	gfi1ab	100	60.187	Oryzias_latipes
ENSMUSG00000029275	Gfi1	100	58.411	ENSORLG00000005060	GFI1	100	57.944	Oryzias_latipes
ENSMUSG00000029275	Gfi1	100	54.225	ENSORLG00020002817	GFI1	90	61.162	Oryzias_latipes_hni
ENSMUSG00000029275	Gfi1	100	60.890	ENSORLG00020001602	gfi1ab	100	60.890	Oryzias_latipes_hni
ENSMUSG00000029275	Gfi1	100	58.879	ENSORLG00015006070	GFI1	100	58.411	Oryzias_latipes_hsok
ENSMUSG00000029275	Gfi1	100	58.372	ENSOMEG00000016722	GFI1	100	57.576	Oryzias_melastigma
ENSMUSG00000029275	Gfi1	100	74.941	ENSOGAG00000027913	GFI1	100	73.005	Otolemur_garnettii
ENSMUSG00000029275	Gfi1	98	97.143	ENSOARG00000016329	GFI1	95	69.466	Ovis_aries
ENSMUSG00000029275	Gfi1	100	74.883	ENSPPAG00000042186	GFI1	100	74.883	Pan_paniscus
ENSMUSG00000029275	Gfi1	100	87.707	ENSPPRG00000007521	GFI1	100	87.707	Panthera_pardus
ENSMUSG00000029275	Gfi1	100	87.470	ENSPTRG00000043053	GFI1	100	87.470	Pan_troglodytes
ENSMUSG00000029275	Gfi1	100	86.998	ENSPANG00000016433	GFI1	100	86.998	Papio_anubis
ENSMUSG00000029275	Gfi1	100	65.207	ENSPKIG00000004263	GFI1	100	64.747	Paramormyrops_kingsleyae
ENSMUSG00000029275	Gfi1	88	74.263	ENSPSIG00000008734	GFI1	97	74.263	Pelodiscus_sinensis
ENSMUSG00000029275	Gfi1	100	59.624	ENSPMGG00000012546	gfi1ab	100	59.624	Periophthalmus_magnuspinnatus
ENSMUSG00000029275	Gfi1	100	76.977	ENSPCIG00000013728	GFI1	100	77.674	Phascolarctos_cinereus
ENSMUSG00000029275	Gfi1	100	61.176	ENSPFOG00000023214	gfi1ab	100	60.941	Poecilia_formosa
ENSMUSG00000029275	Gfi1	85	76.471	ENSPLAG00000010879	gfi1ab	98	76.471	Poecilia_latipinna
ENSMUSG00000029275	Gfi1	100	59.767	ENSPLAG00000005376	GFI1	97	58.051	Poecilia_latipinna
ENSMUSG00000029275	Gfi1	100	59.674	ENSPMEG00000019299	GFI1	100	60.185	Poecilia_mexicana
ENSMUSG00000029275	Gfi1	100	59.954	ENSPMEG00000013694	gfi1ab	100	60.941	Poecilia_mexicana
ENSMUSG00000029275	Gfi1	100	53.258	ENSPREG00000007997	GFI1	100	54.000	Poecilia_reticulata
ENSMUSG00000029275	Gfi1	100	60.235	ENSPREG00000014097	gfi1ab	100	60.000	Poecilia_reticulata
ENSMUSG00000029275	Gfi1	100	72.066	ENSPCAG00000011020	GFI1	100	73.239	Procavia_capensis
ENSMUSG00000029275	Gfi1	100	87.234	ENSPCOG00000020540	GFI1	100	87.234	Propithecus_coquereli
ENSMUSG00000029275	Gfi1	100	83.452	ENSPVAG00000006928	GFI1	100	84.161	Pteropus_vampyrus
ENSMUSG00000029275	Gfi1	100	62.850	ENSPNYG00000021183	gfi1ab	100	62.383	Pundamilia_nyererei
ENSMUSG00000029275	Gfi1	100	55.660	ENSPNAG00000028014	GFI1	100	54.651	Pygocentrus_nattereri
ENSMUSG00000029275	Gfi1	100	59.259	ENSPNAG00000027258	gfi1ab	100	59.390	Pygocentrus_nattereri
ENSMUSG00000029275	Gfi1	100	96.927	ENSRNOG00000002042	Gfi1	100	96.927	Rattus_norvegicus
ENSMUSG00000029275	Gfi1	100	86.998	ENSRBIG00000036467	GFI1	100	86.998	Rhinopithecus_bieti
ENSMUSG00000029275	Gfi1	100	86.998	ENSRROG00000031687	GFI1	100	86.998	Rhinopithecus_roxellana
ENSMUSG00000029275	Gfi1	100	85.579	ENSSBOG00000031300	GFI1	100	85.579	Saimiri_boliviensis_boliviensis
ENSMUSG00000029275	Gfi1	100	65.734	ENSSFOG00015020295	gfi1	100	65.501	Scleropages_formosus
ENSMUSG00000029275	Gfi1	100	61.449	ENSSMAG00000002782	gfi1ab	100	61.449	Scophthalmus_maximus
ENSMUSG00000029275	Gfi1	100	61.882	ENSSDUG00000022410	gfi1ab	100	61.882	Seriola_dumerili
ENSMUSG00000029275	Gfi1	100	62.118	ENSSLDG00000020163	gfi1ab	100	61.176	Seriola_lalandi_dorsalis
ENSMUSG00000029275	Gfi1	81	81.250	ENSSPAG00000009140	gfi1ab	99	81.250	Stegastes_partitus
ENSMUSG00000029275	Gfi1	100	85.816	ENSSSCG00000006902	GFI1	100	86.761	Sus_scrofa
ENSMUSG00000029275	Gfi1	88	73.585	ENSTGUG00000006060	GFI1	100	73.585	Taeniopygia_guttata
ENSMUSG00000029275	Gfi1	100	59.441	ENSTRUG00000000415	gfi1ab	100	59.207	Takifugu_rubripes
ENSMUSG00000029275	Gfi1	100	60.377	ENSTNIG00000000651	gfi1ab	97	60.142	Tetraodon_nigroviridis
ENSMUSG00000029275	Gfi1	100	85.343	ENSTTRG00000000082	GFI1	100	85.343	Tursiops_truncatus
ENSMUSG00000029275	Gfi1	100	83.688	ENSUAMG00000021124	GFI1	97	82.340	Ursus_americanus
ENSMUSG00000029275	Gfi1	100	67.136	ENSXETG00000023006	gfi1	98	67.136	Xenopus_tropicalis
ENSMUSG00000029275	Gfi1	52	80.734	ENSXCOG00000013213	-	63	80.734	Xiphophorus_couchianus
ENSMUSG00000029275	Gfi1	100	53.209	ENSXMAG00000009274	GFI1	70	53.158	Xiphophorus_maculatus
ENSMUSG00000029275	Gfi1	100	60.233	ENSXMAG00000010523	gfi1ab	100	59.535	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	20547752.	IMP	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005515	protein binding	11060035.16819553.17197705.17213822.17707228.21570500.24843136.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0007638	mechanosensory behavior	12441305.	IMP	Process
GO:0009996	negative regulation of cell fate specification	16230531.	IMP	Process
GO:0010956	negative regulation of calcidiol 1-monooxygenase activity	-	ISO	Process
GO:0010977	negative regulation of neuron projection development	-	ISO	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0017053	transcriptional repressor complex	-	ISO	Component
GO:0030097	hemopoiesis	-	IEA	Process
GO:0032088	negative regulation of NF-kappaB transcription factor activity	20547752.	IMP	Process
GO:0034121	regulation of toll-like receptor signaling pathway	-	ISO	Process
GO:0042472	inner ear morphogenesis	12441305.	IMP	Process
GO:0042491	inner ear auditory receptor cell differentiation	12441305.	IMP	Process
GO:0042660	positive regulation of cell fate specification	16230531.	IMP	Process
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045165	cell fate commitment	16230531.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051569	regulation of histone H3-K4 methylation	-	IEA	Process
GO:0070105	positive regulation of interleukin-6-mediated signaling pathway	-	ISO	Process
GO:0071222	cellular response to lipopolysaccharide	20547752.	IEP	Process