EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000029313 (Gene tree)
Gene ID
17355
Gene Symbol
Aff1
Alias
9630032B01Rik|Af4|Mllt2h|Rob
Full Name
AF4/FMR2 family%2C member 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
162949 bases
Position
chr5:103692374-103855322
Accession
1100819
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000059744AF-4PF05110.13011
ENSMUSP00000031256AF-4PF05110.13011
ENSMUSP00000119631AF-4PF05110.132e-26211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000152145-688--- (aa)--
ENSMUST00000126335-1613--- (aa)--
ENSMUST00000031256-8312XM_006534801ENSMUSP000000312561226 (aa)XP_006534864E9Q921
ENSMUST00000153165-2753-ENSMUSP00000119631870 (aa)-B1AVP1
ENSMUST00000054979-8323-ENSMUSP000000597441218 (aa)-A3KMF4
Gene Model
Click here to download ENSMUSG00000029313's gene model file
Pathways
Pathway IDPathway NameSource
mmu05202Transcriptional misregulation in cancerKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029313's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000029313Aff110067.734ENSG00000172493AFF110068.535Homo_sapiens
ENSMUSG00000029313Aff17836.657ENSAPOG00000006096aff48335.355Acanthochromis_polyacanthus
ENSMUSG00000029313Aff19965.495ENSAMEG00000003337AFF110066.534Ailuropoda_melanoleuca
ENSMUSG00000029313Aff16031.307ENSACIG00000010525aff48233.574Amphilophus_citrinellus
ENSMUSG00000029313Aff18036.275ENSATEG00000010963aff47835.036Anabas_testudineus
ENSMUSG00000029313Aff19949.400ENSAPLG00000004059AFF19949.079Anas_platyrhynchos
ENSMUSG00000029313Aff15248.529ENSAPLG00000003660-7247.426Anas_platyrhynchos
ENSMUSG00000029313Aff17837.882ENSAPLG00000011166AFF47936.308Anas_platyrhynchos
ENSMUSG00000029313Aff16239.324ENSACAG00000022605AFF47935.685Anolis_carolinensis
ENSMUSG00000029313Aff19946.983ENSACAG00000012192AFF19946.426Anolis_carolinensis
ENSMUSG00000029313Aff110068.138ENSANAG00000017095AFF110069.808Aotus_nancymaae
ENSMUSG00000029313Aff16037.873ENSACLG00000011879aff47835.124Astatotilapia_calliptera
ENSMUSG00000029313Aff17834.760ENSAMXG00000020137aff47733.918Astyanax_mexicanus
ENSMUSG00000029313Aff17737.333ENSBTAG00000009482AFF47936.570Bos_taurus
ENSMUSG00000029313Aff110067.817ENSCJAG00000006047AFF110068.770Callithrix_jacchus
ENSMUSG00000029313Aff110065.710ENSCAFG00000009476AFF110066.427Canis_familiaris
ENSMUSG00000029313Aff19962.901ENSCAFG00020008224AFF19963.381Canis_lupus_dingo
ENSMUSG00000029313Aff19464.167ENSTSYG00000002039AFF110064.405Carlito_syrichta
ENSMUSG00000029313Aff16951.136ENSCAPG00000012999AFF36351.136Cavia_aperea
ENSMUSG00000029313Aff19956.153ENSCAPG00000006540AFF110056.072Cavia_aperea
ENSMUSG00000029313Aff17051.136ENSCPOG00000006346AFF37554.545Cavia_porcellus
ENSMUSG00000029313Aff19958.067ENSCPOG00000034568AFF19957.748Cavia_porcellus
ENSMUSG00000029313Aff15035.725ENSCCAG00000030353AFF47935.876Cebus_capucinus
ENSMUSG00000029313Aff19964.435ENSCCAG00000027623AFF19771.066Cebus_capucinus
ENSMUSG00000029313Aff17148.148ENSCCAG00000025994AFF27142.910Cebus_capucinus
ENSMUSG00000029313Aff110069.384ENSCATG00000039501AFF19873.724Cercocebus_atys
ENSMUSG00000029313Aff16753.409ENSCLAG00000017100AFF37557.143Chinchilla_lanigera
ENSMUSG00000029313Aff19957.053ENSCLAG00000005537AFF19958.077Chinchilla_lanigera
ENSMUSG00000029313Aff110069.305ENSCSAG00000004333AFF110070.447Chlorocebus_sabaeus
ENSMUSG00000029313Aff17770.248ENSCHOG00000000041AFF17873.554Choloepus_hoffmanni
ENSMUSG00000029313Aff19850.803ENSCPBG00000005382AFF19951.118Chrysemys_picta_bellii
ENSMUSG00000029313Aff110068.955ENSCANG00000037514AFF110070.096Colobus_angolensis_palliatus
ENSMUSG00000029313Aff110078.416ENSCGRG00001015769Aff110078.739Cricetulus_griseus_chok1gshd
ENSMUSG00000029313Aff15978.142ENSCGRG00000004837Aff110075.754Cricetulus_griseus_crigri
ENSMUSG00000029313Aff18135.525ENSCSEG00000017002aff49933.890Cynoglossus_semilaevis
ENSMUSG00000029313Aff17834.455ENSCVAG00000005218aff47834.224Cyprinodon_variegatus
ENSMUSG00000029313Aff17366.111ENSDNOG00000048783-10068.111Dasypus_novemcinctus
ENSMUSG00000029313Aff19967.877ENSDORG00000013881Aff110068.442Dipodomys_ordii
ENSMUSG00000029313Aff19478.824ENSETEG00000014905AFF110059.442Echinops_telfairi
ENSMUSG00000029313Aff110066.879ENSEASG00005012760AFF110067.199Equus_asinus_asinus
ENSMUSG00000029313Aff110067.199ENSECAG00000003619AFF110067.225Equus_caballus
ENSMUSG00000029313Aff16056.944ENSEEUG00000011214AFF46956.944Erinaceus_europaeus
ENSMUSG00000029313Aff17595.000ENSEEUG00000013664-7495.000Erinaceus_europaeus
ENSMUSG00000029313Aff17836.159ENSELUG00000023871aff48048.760Esox_lucius
ENSMUSG00000029313Aff16380.000ENSELUG00000019953-5180.000Esox_lucius
ENSMUSG00000029313Aff19963.376ENSFCAG00000029806AFF19964.490Felis_catus
ENSMUSG00000029313Aff18357.971ENSFALG00000008916AFF45360.606Ficedula_albicollis
ENSMUSG00000029313Aff19944.968ENSFALG00000005554AFF19944.268Ficedula_albicollis
ENSMUSG00000029313Aff19960.884ENSFDAG00000018846AFF19960.096Fukomys_damarensis
ENSMUSG00000029313Aff17834.778ENSFHEG00000004526aff46034.289Fundulus_heteroclitus
ENSMUSG00000029313Aff16046.269ENSGMOG00000008803aff46341.393Gadus_morhua
ENSMUSG00000029313Aff18364.286ENSGALG00000043935AFF19944.516Gallus_gallus
ENSMUSG00000029313Aff17737.333ENSGALG00000030147AFF48335.910Gallus_gallus
ENSMUSG00000029313Aff17837.385ENSGACG00000020734aff47935.670Gasterosteus_aculeatus
ENSMUSG00000029313Aff17837.487ENSGAGG00000020214AFF47935.264Gopherus_agassizii
ENSMUSG00000029313Aff110068.615ENSGGOG00000008497AFF110069.360Gorilla_gorilla
ENSMUSG00000029313Aff16037.873ENSHBUG00000021987aff47935.331Haplochromis_burtoni
ENSMUSG00000029313Aff19961.779ENSHGLG00000001384AFF19961.218Heterocephalus_glaber_female
ENSMUSG00000029313Aff19960.016ENSHGLG00100016607AFF110060.130Heterocephalus_glaber_male
ENSMUSG00000029313Aff17836.134ENSHCOG00000016280aff47935.415Hippocampus_comes
ENSMUSG00000029313Aff17363.636ENSIPUG00000011689aff46563.636Ictalurus_punctatus
ENSMUSG00000029313Aff110071.337ENSSTOG00000006530AFF19971.097Ictidomys_tridecemlineatus
ENSMUSG00000029313Aff110069.032ENSJJAG00000022877Aff110068.675Jaculus_jaculus
ENSMUSG00000029313Aff15137.397ENSJJAG00000013155Aff37557.143Jaculus_jaculus
ENSMUSG00000029313Aff17736.789ENSJJAG00000000912Aff47936.714Jaculus_jaculus
ENSMUSG00000029313Aff16837.157ENSKMAG00000013113-5236.154Kryptolebias_marmoratus
ENSMUSG00000029313Aff19945.760ENSLACG00000007303AFF19945.927Latimeria_chalumnae
ENSMUSG00000029313Aff17837.903ENSLACG00000008849AFF46735.963Latimeria_chalumnae
ENSMUSG00000029313Aff17940.495ENSLOCG00000004025AFF16437.600Lepisosteus_oculatus
ENSMUSG00000029313Aff16543.939ENSLOCG00000015403aff26544.275Lepisosteus_oculatus
ENSMUSG00000029313Aff17937.067ENSLOCG00000010610aff47835.464Lepisosteus_oculatus
ENSMUSG00000029313Aff15663.200ENSLAFG00000015880-9762.777Loxodonta_africana
ENSMUSG00000029313Aff110069.464ENSMFAG00000037700AFF19873.522Macaca_fascicularis
ENSMUSG00000029313Aff110069.464ENSMMUG00000014076AFF110070.607Macaca_mulatta
ENSMUSG00000029313Aff110069.305ENSMNEG00000031536AFF110070.447Macaca_nemestrina
ENSMUSG00000029313Aff110069.305ENSMLEG00000039099AFF110070.447Mandrillus_leucophaeus
ENSMUSG00000029313Aff17039.070ENSMAMG00000016189-6041.429Mastacembelus_armatus
ENSMUSG00000029313Aff17837.980ENSMAMG00000021453aff47835.751Mastacembelus_armatus
ENSMUSG00000029313Aff16037.873ENSMZEG00005003218aff47935.124Maylandia_zebra
ENSMUSG00000029313Aff16033.507ENSMGAG00000008246-9433.724Meleagris_gallopavo
ENSMUSG00000029313Aff17737.589ENSMGAG00000009144AFF47935.955Meleagris_gallopavo
ENSMUSG00000029313Aff19944.364ENSMGAG00000007646AFF19944.944Meleagris_gallopavo
ENSMUSG00000029313Aff110078.082ENSMAUG00000010241Aff19977.670Mesocricetus_auratus
ENSMUSG00000029313Aff17845.070ENSMAUG00000013669Aff49545.070Mesocricetus_auratus
ENSMUSG00000029313Aff19152.300ENSMICG00000028855-8552.785Microcebus_murinus
ENSMUSG00000029313Aff110075.543ENSMOCG00000017389Aff110076.991Microtus_ochrogaster
ENSMUSG00000029313Aff19950.479ENSMODG00000020745AFF19750.399Monodelphis_domestica
ENSMUSG00000029313Aff16264.615ENSMALG00000017690aff46964.615Monopterus_albus
ENSMUSG00000029313Aff110096.970MGP_CAROLIEiJ_G0027469Aff110096.970Mus_caroli
ENSMUSG00000029313Aff110094.007MGP_PahariEiJ_G0017247Aff110094.417Mus_pahari
ENSMUSG00000029313Aff17736.724MGP_PahariEiJ_G0017466Aff45760.870Mus_pahari
ENSMUSG00000029313Aff110098.604MGP_SPRETEiJ_G0028466Aff110098.604Mus_spretus
ENSMUSG00000029313Aff16737.171ENSMPUG00000010316AFF45039.709Mustela_putorius_furo
ENSMUSG00000029313Aff110065.739ENSMPUG00000002270AFF19965.978Mustela_putorius_furo
ENSMUSG00000029313Aff19965.973ENSMLUG00000000293AFF110064.988Myotis_lucifugus
ENSMUSG00000029313Aff15136.419ENSNGAG00000002408Aff36455.844Nannospalax_galili
ENSMUSG00000029313Aff17737.590ENSNGAG00000019867Aff47936.598Nannospalax_galili
ENSMUSG00000029313Aff19966.024ENSNLEG00000009429AFF19967.416Nomascus_leucogenys
ENSMUSG00000029313Aff17144.922ENSNLEG00000012874AFF47936.194Nomascus_leucogenys
ENSMUSG00000029313Aff19963.229ENSOPRG00000017154-9963.629Ochotona_princeps
ENSMUSG00000029313Aff17658.537ENSOPRG00000014519AFF46060.215Ochotona_princeps
ENSMUSG00000029313Aff19364.667ENSODEG00000007407AFF110064.667Octodon_degus
ENSMUSG00000029313Aff17837.090ENSONIG00000008446aff47835.744Oreochromis_niloticus
ENSMUSG00000029313Aff15544.030ENSOANG00000001095-7347.037Ornithorhynchus_anatinus
ENSMUSG00000029313Aff110050.000ENSOANG00000013624AFF110051.561Ornithorhynchus_anatinus
ENSMUSG00000029313Aff19964.796ENSOCUG00000002105AFF19665.088Oryctolagus_cuniculus
ENSMUSG00000029313Aff18464.789ENSORLG00015004684aff47833.883Oryzias_latipes_hsok
ENSMUSG00000029313Aff18464.789ENSOMEG00000005078aff48465.625Oryzias_melastigma
ENSMUSG00000029313Aff16363.158ENSOMEG00000005799-5463.158Oryzias_melastigma
ENSMUSG00000029313Aff19960.463ENSOGAG00000009622-9961.760Otolemur_garnettii
ENSMUSG00000029313Aff17252.988ENSOGAG00000031211-9953.716Otolemur_garnettii
ENSMUSG00000029313Aff19965.949ENSOARG00000004522AFF110065.443Ovis_aries
ENSMUSG00000029313Aff17737.449ENSOARG00000013406AFF47936.674Ovis_aries
ENSMUSG00000029313Aff110068.750ENSPPAG00000029196AFF110069.175Pan_paniscus
ENSMUSG00000029313Aff19963.432ENSPPRG00000023590AFF19964.635Panthera_pardus
ENSMUSG00000029313Aff18265.918ENSPTIG00000011838AFF19967.951Panthera_tigris_altaica
ENSMUSG00000029313Aff15135.569ENSPTRG00000017228AFF48532.265Pan_troglodytes
ENSMUSG00000029313Aff17137.209ENSPTRG00000046486-8532.265Pan_troglodytes
ENSMUSG00000029313Aff110068.670ENSPTRG00000016255AFF19976.596Pan_troglodytes
ENSMUSG00000029313Aff19866.206ENSPANG00000016722AFF19968.365Papio_anubis
ENSMUSG00000029313Aff19934.913ENSPKIG00000024249AFF46933.631Paramormyrops_kingsleyae
ENSMUSG00000029313Aff17759.091ENSPKIG00000024325AFF45359.091Paramormyrops_kingsleyae
ENSMUSG00000029313Aff110050.473ENSPSIG00000003759AFF110049.685Pelodiscus_sinensis
ENSMUSG00000029313Aff110079.415ENSPEMG00000000785Aff110079.045Peromyscus_maniculatus_bairdii
ENSMUSG00000029313Aff17837.191ENSPMAG00000007807aff45235.747Petromyzon_marinus
ENSMUSG00000029313Aff17932.724ENSPCIG00000030054AFF26332.019Phascolarctos_cinereus
ENSMUSG00000029313Aff19382.143ENSPCIG00000011395AFF19280.645Phascolarctos_cinereus
ENSMUSG00000029313Aff17834.995ENSPREG00000005287aff49532.328Poecilia_reticulata
ENSMUSG00000029313Aff110067.416ENSPPYG00000014910AFF110068.244Pongo_abelii
ENSMUSG00000029313Aff17858.333ENSPCAG00000003995AFF48058.333Procavia_capensis
ENSMUSG00000029313Aff17689.130ENSPCAG00000005658AFF17489.130Procavia_capensis
ENSMUSG00000029313Aff19762.745ENSPCOG00000027339AFF19762.930Propithecus_coquereli
ENSMUSG00000029313Aff19565.422ENSPVAG00000014455AFF19664.568Pteropus_vampyrus
ENSMUSG00000029313Aff16037.873ENSPNYG00000014804aff47935.124Pundamilia_nyererei
ENSMUSG00000029313Aff17735.988ENSRNOG00000006965Aff47935.649Rattus_norvegicus
ENSMUSG00000029313Aff19984.628ENSRNOG00000002232Aff19984.339Rattus_norvegicus
ENSMUSG00000029313Aff110069.649ENSRBIG00000032242AFF110070.367Rhinopithecus_bieti
ENSMUSG00000029313Aff110069.305ENSRROG00000045716AFF19873.469Rhinopithecus_roxellana
ENSMUSG00000029313Aff15035.636ENSSBOG00000021562AFF45637.937Saimiri_boliviensis_boliviensis
ENSMUSG00000029313Aff110068.215ENSSBOG00000035401AFF110068.960Saimiri_boliviensis_boliviensis
ENSMUSG00000029313Aff19950.240ENSSHAG00000004203AFF19949.920Sarcophilus_harrisii
ENSMUSG00000029313Aff18463.889ENSSMAG00000004734aff48764.615Scophthalmus_maximus
ENSMUSG00000029313Aff17837.589ENSSDUG00000019498aff49935.364Seriola_dumerili
ENSMUSG00000029313Aff17837.589ENSSLDG00000007683aff49935.243Seriola_lalandi_dorsalis
ENSMUSG00000029313Aff17552.819ENSSARG00000013296-7852.071Sorex_araneus
ENSMUSG00000029313Aff17834.949ENSSPUG00000012215AFF47352.482Sphenodon_punctatus
ENSMUSG00000029313Aff19949.561ENSSPUG00000001574AFF19950.200Sphenodon_punctatus
ENSMUSG00000029313Aff16734.401ENSSPAG00000012370aff49933.093Stegastes_partitus
ENSMUSG00000029313Aff17737.140ENSSSCG00000014291AFF47936.457Sus_scrofa
ENSMUSG00000029313Aff15151.136ENSTGUG00000004690AFF25651.136Taeniopygia_guttata
ENSMUSG00000029313Aff17737.087ENSTGUG00000000187AFF47936.241Taeniopygia_guttata
ENSMUSG00000029313Aff19944.355ENSTGUG00000002726AFF19943.795Taeniopygia_guttata
ENSMUSG00000029313Aff17837.678ENSTRUG00000008087aff47835.348Takifugu_rubripes
ENSMUSG00000029313Aff15638.628ENSTNIG00000007537-5739.068Tetraodon_nigroviridis
ENSMUSG00000029313Aff18459.722ENSTNIG00000018201aff48948.148Tetraodon_nigroviridis
ENSMUSG00000029313Aff19967.255ENSTBEG00000007536AFF110066.774Tupaia_belangeri
ENSMUSG00000029313Aff19662.105ENSTTRG00000005595AFF110065.707Tursiops_truncatus
ENSMUSG00000029313Aff19663.931ENSUAMG00000001919AFF19964.334Ursus_americanus
ENSMUSG00000029313Aff18065.903ENSUMAG00000025433AFF18667.577Ursus_maritimus
ENSMUSG00000029313Aff19965.865ENSVVUG00000009263AFF19966.346Vulpes_vulpes
ENSMUSG00000029313Aff17737.166ENSVVUG00000024524AFF47936.194Vulpes_vulpes
ENSMUSG00000029313Aff18442.938ENSXETG00000019955aff18043.669Xenopus_tropicalis
ENSMUSG00000029313Aff17745.896ENSXETG00000019630aff27243.233Xenopus_tropicalis
ENSMUSG00000029313Aff16032.705ENSXCOG00000006385aff45336.027Xiphophorus_couchianus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003690double-stranded DNA binding21873635.IBAFunction
GO:0003700DNA-binding transcription factor activity21873635.IBAFunction
GO:0003700DNA-binding transcription factor activity11923441.TASFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus9365243.IDAComponent
GO:0006351transcription, DNA-templated11923441.TASProcess
GO:0008023transcription elongation factor complex21873635.IBAComponent
GO:0008023transcription elongation factor complex-ISOComponent
GO:0032783ELL-EAF complex21873635.IBAComponent
GO:0045893positive regulation of transcription, DNA-templated9365243.IDAProcess

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