EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029345 (Gene tree)
Gene ID: 54723
Gene Symbol: Tfip11
Alias: Tip39
Full Name: tuftelin interacting protein 11
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 11716 bases
Position: chr5:112326358-112338073
Accession: 1930075
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000142844	G-patch	PF01585.23	2.1e-17	1	1
ENSMUSP00000031288	G-patch	PF01585.23	5.3e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000129528	-	634	-	ENSMUSP00000115225	70 (aa)	-	D3YWC8
ENSMUST00000126736	-	827	-	-	- (aa)	-	-
ENSMUST00000031288	-	3560	-	ENSMUSP00000031288	838 (aa)	-	Q9ERA6
ENSMUST00000198238	-	726	-	ENSMUSP00000142844	93 (aa)	-	A0A0G2JEN8

Gene Model

Click here to download ENSMUSG00000029345's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029345's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029345	Tfip11	100	97.849	ENSG00000100109	TFIP11	100	95.506	Homo_sapiens
ENSMUSG00000029345	Tfip11	90	85.714	ENSAPOG00000011350	tfip11	100	67.292	Acanthochromis_polyacanthus
ENSMUSG00000029345	Tfip11	100	97.849	ENSAMEG00000018077	TFIP11	100	91.647	Ailuropoda_melanoleuca
ENSMUSG00000029345	Tfip11	94	83.908	ENSACIG00000020016	tfip11	100	66.863	Amphilophus_citrinellus
ENSMUSG00000029345	Tfip11	95	85.227	ENSAOCG00000014412	tfip11	100	67.101	Amphiprion_ocellaris
ENSMUSG00000029345	Tfip11	95	85.227	ENSAPEG00000021837	tfip11	100	67.101	Amphiprion_percula
ENSMUSG00000029345	Tfip11	97	84.444	ENSATEG00000006472	tfip11	100	66.943	Anabas_testudineus
ENSMUSG00000029345	Tfip11	99	95.652	ENSAPLG00000012229	TFIP11	99	86.927	Anas_platyrhynchos
ENSMUSG00000029345	Tfip11	100	97.849	ENSANAG00000036330	TFIP11	100	91.885	Aotus_nancymaae
ENSMUSG00000029345	Tfip11	98	83.516	ENSACLG00000001959	tfip11	100	66.940	Astatotilapia_calliptera
ENSMUSG00000029345	Tfip11	96	83.146	ENSAMXG00000018840	tfip11	99	66.082	Astyanax_mexicanus
ENSMUSG00000029345	Tfip11	100	98.925	ENSBTAG00000012288	TFIP11	100	90.215	Bos_taurus
ENSMUSG00000029345	Tfip11	98	31.609	WBGene00007412	stip-1	99	31.098	Caenorhabditis_elegans
ENSMUSG00000029345	Tfip11	100	97.849	ENSCJAG00000008628	TFIP11	100	91.885	Callithrix_jacchus
ENSMUSG00000029345	Tfip11	100	98.925	ENSCAFG00000011741	TFIP11	100	92.124	Canis_familiaris
ENSMUSG00000029345	Tfip11	100	98.925	ENSCAFG00020022398	TFIP11	100	92.124	Canis_lupus_dingo
ENSMUSG00000029345	Tfip11	100	98.925	ENSCHIG00000017173	TFIP11	100	89.976	Capra_hircus
ENSMUSG00000029345	Tfip11	100	98.925	ENSTSYG00000011768	TFIP11	100	91.885	Carlito_syrichta
ENSMUSG00000029345	Tfip11	100	87.470	ENSCAPG00000014283	TFIP11	100	87.470	Cavia_aperea
ENSMUSG00000029345	Tfip11	100	98.925	ENSCPOG00000000358	TFIP11	100	92.243	Cavia_porcellus
ENSMUSG00000029345	Tfip11	100	97.849	ENSCCAG00000022675	TFIP11	100	91.766	Cebus_capucinus
ENSMUSG00000029345	Tfip11	100	97.849	ENSCATG00000040954	TFIP11	100	92.005	Cercocebus_atys
ENSMUSG00000029345	Tfip11	100	98.925	ENSCLAG00000007269	TFIP11	100	92.124	Chinchilla_lanigera
ENSMUSG00000029345	Tfip11	100	97.849	ENSCSAG00000010084	TFIP11	100	92.005	Chlorocebus_sabaeus
ENSMUSG00000029345	Tfip11	100	97.849	ENSCHOG00000008730	TFIP11	89	98.131	Choloepus_hoffmanni
ENSMUSG00000029345	Tfip11	99	95.652	ENSCPBG00000021598	TFIP11	100	85.578	Chrysemys_picta_bellii
ENSMUSG00000029345	Tfip11	92	65.116	ENSCING00000008698	stip	98	42.456	Ciona_intestinalis
ENSMUSG00000029345	Tfip11	92	66.279	ENSCSAVG00000002061	-	98	41.425	Ciona_savignyi
ENSMUSG00000029345	Tfip11	100	97.849	ENSCANG00000002400	TFIP11	100	92.005	Colobus_angolensis_palliatus
ENSMUSG00000029345	Tfip11	100	100.000	ENSCGRG00001013439	Tfip11	100	98.329	Cricetulus_griseus_chok1gshd
ENSMUSG00000029345	Tfip11	100	100.000	ENSCGRG00000000420	Tfip11	100	98.329	Cricetulus_griseus_crigri
ENSMUSG00000029345	Tfip11	98	83.516	ENSCSEG00000014082	tfip11	100	65.684	Cynoglossus_semilaevis
ENSMUSG00000029345	Tfip11	98	83.516	ENSCVAG00000011674	tfip11	100	66.823	Cyprinodon_variegatus
ENSMUSG00000029345	Tfip11	96	86.517	ENSDARG00000056932	tfip11	100	65.839	Danio_rerio
ENSMUSG00000029345	Tfip11	100	97.849	ENSDNOG00000042556	TFIP11	100	91.050	Dasypus_novemcinctus
ENSMUSG00000029345	Tfip11	99	96.739	ENSDORG00000006263	Tfip11	100	91.885	Dipodomys_ordii
ENSMUSG00000029345	Tfip11	98	45.918	FBgn0024191	sip1	99	35.253	Drosophila_melanogaster
ENSMUSG00000029345	Tfip11	95	70.455	ENSEBUG00000015059	tfip11	99	56.812	Eptatretus_burgeri
ENSMUSG00000029345	Tfip11	99	96.739	ENSEASG00005009760	-	100	92.482	Equus_asinus_asinus
ENSMUSG00000029345	Tfip11	99	89.130	ENSEASG00005014285	-	100	85.680	Equus_asinus_asinus
ENSMUSG00000029345	Tfip11	99	95.652	ENSECAG00000016242	-	100	92.482	Equus_caballus
ENSMUSG00000029345	Tfip11	100	90.323	ENSECAG00000004795	-	100	86.038	Equus_caballus
ENSMUSG00000029345	Tfip11	99	94.565	ENSEEUG00000015847	TFIP11	100	84.746	Erinaceus_europaeus
ENSMUSG00000029345	Tfip11	97	82.222	ENSELUG00000022017	tfip11	100	66.667	Esox_lucius
ENSMUSG00000029345	Tfip11	97	82.222	ENSELUG00000011596	TFIP11	100	66.862	Esox_lucius
ENSMUSG00000029345	Tfip11	100	97.849	ENSFCAG00000031626	TFIP11	100	92.363	Felis_catus
ENSMUSG00000029345	Tfip11	99	96.739	ENSFALG00000008481	-	100	85.476	Ficedula_albicollis
ENSMUSG00000029345	Tfip11	97	87.778	ENSFALG00000008853	-	100	72.434	Ficedula_albicollis
ENSMUSG00000029345	Tfip11	100	98.925	ENSFDAG00000016663	TFIP11	100	91.527	Fukomys_damarensis
ENSMUSG00000029345	Tfip11	98	84.615	ENSFHEG00000011548	tfip11	100	67.644	Fundulus_heteroclitus
ENSMUSG00000029345	Tfip11	98	82.418	ENSGMOG00000004834	tfip11	100	64.554	Gadus_morhua
ENSMUSG00000029345	Tfip11	99	96.739	ENSGALG00000005623	TFIP11	100	86.055	Gallus_gallus
ENSMUSG00000029345	Tfip11	98	82.418	ENSGAFG00000012142	tfip11	100	66.431	Gambusia_affinis
ENSMUSG00000029345	Tfip11	98	85.714	ENSGACG00000009599	tfip11	100	66.313	Gasterosteus_aculeatus
ENSMUSG00000029345	Tfip11	99	95.652	ENSGAGG00000008196	TFIP11	100	85.340	Gopherus_agassizii
ENSMUSG00000029345	Tfip11	100	97.849	ENSGGOG00000004999	TFIP11	100	92.124	Gorilla_gorilla
ENSMUSG00000029345	Tfip11	98	83.516	ENSHBUG00000009935	tfip11	100	67.057	Haplochromis_burtoni
ENSMUSG00000029345	Tfip11	100	98.925	ENSHGLG00000008873	TFIP11	100	92.363	Heterocephalus_glaber_female
ENSMUSG00000029345	Tfip11	100	98.925	ENSHGLG00100016817	TFIP11	100	92.363	Heterocephalus_glaber_male
ENSMUSG00000029345	Tfip11	96	84.270	ENSHCOG00000015846	tfip11	100	65.808	Hippocampus_comes
ENSMUSG00000029345	Tfip11	96	82.022	ENSIPUG00000011965	tfip11	100	65.362	Ictalurus_punctatus
ENSMUSG00000029345	Tfip11	100	85.203	ENSSTOG00000013530	TFIP11	93	98.701	Ictidomys_tridecemlineatus
ENSMUSG00000029345	Tfip11	100	97.849	ENSJJAG00000020844	-	100	97.849	Jaculus_jaculus
ENSMUSG00000029345	Tfip11	98	85.714	ENSKMAG00000013948	tfip11	100	65.047	Kryptolebias_marmoratus
ENSMUSG00000029345	Tfip11	97	85.556	ENSLBEG00000014079	tfip11	100	67.447	Labrus_bergylta
ENSMUSG00000029345	Tfip11	98	92.308	ENSLACG00000009243	TFIP11	100	77.976	Latimeria_chalumnae
ENSMUSG00000029345	Tfip11	96	80.899	ENSLOCG00000008684	tfip11	99	70.083	Lepisosteus_oculatus
ENSMUSG00000029345	Tfip11	100	97.849	ENSMFAG00000043406	TFIP11	100	92.005	Macaca_fascicularis
ENSMUSG00000029345	Tfip11	100	97.849	ENSMMUG00000023446	TFIP11	100	92.005	Macaca_mulatta
ENSMUSG00000029345	Tfip11	100	97.849	ENSMNEG00000039522	TFIP11	100	91.977	Macaca_nemestrina
ENSMUSG00000029345	Tfip11	100	97.849	ENSMLEG00000039426	TFIP11	100	92.005	Mandrillus_leucophaeus
ENSMUSG00000029345	Tfip11	95	85.227	ENSMAMG00000013817	tfip11	100	67.450	Mastacembelus_armatus
ENSMUSG00000029345	Tfip11	98	83.516	ENSMZEG00005016814	tfip11	100	66.940	Maylandia_zebra
ENSMUSG00000029345	Tfip11	99	96.739	ENSMGAG00000006881	TFIP11	100	82.956	Meleagris_gallopavo
ENSMUSG00000029345	Tfip11	100	100.000	ENSMAUG00000016136	Tfip11	100	98.091	Mesocricetus_auratus
ENSMUSG00000029345	Tfip11	100	98.925	ENSMICG00000013732	TFIP11	100	92.363	Microcebus_murinus
ENSMUSG00000029345	Tfip11	100	100.000	ENSMOCG00000021195	Tfip11	100	98.210	Microtus_ochrogaster
ENSMUSG00000029345	Tfip11	97	85.556	ENSMMOG00000017940	tfip11	100	65.537	Mola_mola
ENSMUSG00000029345	Tfip11	98	96.703	ENSMODG00000010710	TFIP11	100	88.186	Monodelphis_domestica
ENSMUSG00000029345	Tfip11	100	79.833	ENSMODG00000025040	-	100	80.191	Monodelphis_domestica
ENSMUSG00000029345	Tfip11	95	82.955	ENSMALG00000011938	tfip11	100	67.692	Monopterus_albus
ENSMUSG00000029345	Tfip11	100	100.000	MGP_CAROLIEiJ_G0027562	Tfip11	100	100.000	Mus_caroli
ENSMUSG00000029345	Tfip11	100	100.000	MGP_PahariEiJ_G0024144	-	100	100.000	Mus_pahari
ENSMUSG00000029345	Tfip11	100	100.000	MGP_SPRETEiJ_G0028560	Tfip11	100	100.000	Mus_spretus
ENSMUSG00000029345	Tfip11	100	98.925	ENSMPUG00000013605	TFIP11	93	91.961	Mustela_putorius_furo
ENSMUSG00000029345	Tfip11	100	97.849	ENSMLUG00000008015	TFIP11	100	92.124	Myotis_lucifugus
ENSMUSG00000029345	Tfip11	100	98.925	ENSNGAG00000001168	Tfip11	100	95.346	Nannospalax_galili
ENSMUSG00000029345	Tfip11	98	83.516	ENSNBRG00000005227	tfip11	100	66.863	Neolamprologus_brichardi
ENSMUSG00000029345	Tfip11	100	97.849	ENSNLEG00000007735	TFIP11	100	91.766	Nomascus_leucogenys
ENSMUSG00000029345	Tfip11	98	96.703	ENSMEUG00000006642	TFIP11	100	88.544	Notamacropus_eugenii
ENSMUSG00000029345	Tfip11	100	98.925	ENSOPRG00000013740	TFIP11	74	93.575	Ochotona_princeps
ENSMUSG00000029345	Tfip11	100	97.849	ENSODEG00000017086	TFIP11	100	92.005	Octodon_degus
ENSMUSG00000029345	Tfip11	95	84.091	ENSONIG00000013652	tfip11	100	67.409	Oreochromis_niloticus
ENSMUSG00000029345	Tfip11	100	98.925	ENSOCUG00000006298	TFIP11	100	91.418	Oryctolagus_cuniculus
ENSMUSG00000029345	Tfip11	96	85.393	ENSORLG00000008318	tfip11	100	65.321	Oryzias_latipes
ENSMUSG00000029345	Tfip11	96	85.393	ENSORLG00020012182	tfip11	100	65.842	Oryzias_latipes_hni
ENSMUSG00000029345	Tfip11	96	85.393	ENSORLG00015001303	tfip11	100	65.842	Oryzias_latipes_hsok
ENSMUSG00000029345	Tfip11	96	85.393	ENSOMEG00000000088	tfip11	100	64.970	Oryzias_melastigma
ENSMUSG00000029345	Tfip11	100	98.925	ENSOGAG00000010584	-	100	91.885	Otolemur_garnettii
ENSMUSG00000029345	Tfip11	100	89.247	ENSOGAG00000029400	-	99	75.152	Otolemur_garnettii
ENSMUSG00000029345	Tfip11	100	94.624	ENSOARG00000001236	TFIP11	100	88.544	Ovis_aries
ENSMUSG00000029345	Tfip11	100	97.849	ENSPPAG00000037529	TFIP11	100	92.124	Pan_paniscus
ENSMUSG00000029345	Tfip11	100	97.849	ENSPPRG00000010373	TFIP11	100	92.243	Panthera_pardus
ENSMUSG00000029345	Tfip11	100	97.849	ENSPTIG00000005731	TFIP11	100	92.124	Panthera_tigris_altaica
ENSMUSG00000029345	Tfip11	100	97.849	ENSPTRG00000014196	TFIP11	100	92.124	Pan_troglodytes
ENSMUSG00000029345	Tfip11	100	97.849	ENSPANG00000018711	TFIP11	100	92.005	Papio_anubis
ENSMUSG00000029345	Tfip11	96	82.022	ENSPKIG00000024728	tfip11	100	68.284	Paramormyrops_kingsleyae
ENSMUSG00000029345	Tfip11	99	96.739	ENSPSIG00000009979	TFIP11	100	85.340	Pelodiscus_sinensis
ENSMUSG00000029345	Tfip11	98	81.319	ENSPMGG00000021616	tfip11	100	61.249	Periophthalmus_magnuspinnatus
ENSMUSG00000029345	Tfip11	100	100.000	ENSPEMG00000009979	Tfip11	100	98.329	Peromyscus_maniculatus_bairdii
ENSMUSG00000029345	Tfip11	95	77.273	ENSPMAG00000005546	tfip11	100	58.315	Petromyzon_marinus
ENSMUSG00000029345	Tfip11	98	96.703	ENSPCIG00000020963	TFIP11	100	88.305	Phascolarctos_cinereus
ENSMUSG00000029345	Tfip11	98	82.418	ENSPFOG00000016485	tfip11	100	66.784	Poecilia_formosa
ENSMUSG00000029345	Tfip11	98	82.418	ENSPLAG00000003258	tfip11	100	66.667	Poecilia_latipinna
ENSMUSG00000029345	Tfip11	98	82.418	ENSPMEG00000008257	tfip11	100	66.784	Poecilia_mexicana
ENSMUSG00000029345	Tfip11	98	83.516	ENSPREG00000001742	tfip11	100	66.667	Poecilia_reticulata
ENSMUSG00000029345	Tfip11	100	83.215	ENSPPYG00000011666	TFIP11	100	83.333	Pongo_abelii
ENSMUSG00000029345	Tfip11	100	98.925	ENSPCAG00000005912	TFIP11	93	96.346	Procavia_capensis
ENSMUSG00000029345	Tfip11	100	98.925	ENSPCOG00000027919	TFIP11	100	92.124	Propithecus_coquereli
ENSMUSG00000029345	Tfip11	98	83.516	ENSPNYG00000018025	tfip11	100	66.823	Pundamilia_nyererei
ENSMUSG00000029345	Tfip11	96	84.270	ENSPNAG00000015368	tfip11	100	66.824	Pygocentrus_nattereri
ENSMUSG00000029345	Tfip11	100	100.000	ENSRNOG00000000663	Tfip11	100	99.165	Rattus_norvegicus
ENSMUSG00000029345	Tfip11	100	97.849	ENSRBIG00000044444	TFIP11	100	91.885	Rhinopithecus_bieti
ENSMUSG00000029345	Tfip11	100	97.849	ENSRROG00000034930	TFIP11	100	91.885	Rhinopithecus_roxellana
ENSMUSG00000029345	Tfip11	100	97.849	ENSSBOG00000035111	TFIP11	100	91.885	Saimiri_boliviensis_boliviensis
ENSMUSG00000029345	Tfip11	98	96.703	ENSSHAG00000014104	TFIP11	100	88.425	Sarcophilus_harrisii
ENSMUSG00000029345	Tfip11	96	82.022	ENSSFOG00015013856	tfip11	100	68.839	Scleropages_formosus
ENSMUSG00000029345	Tfip11	98	86.813	ENSSMAG00000011179	tfip11	100	68.038	Scophthalmus_maximus
ENSMUSG00000029345	Tfip11	96	84.270	ENSSDUG00000014159	tfip11	100	67.136	Seriola_dumerili
ENSMUSG00000029345	Tfip11	96	84.270	ENSSLDG00000001011	tfip11	99	58.984	Seriola_lalandi_dorsalis
ENSMUSG00000029345	Tfip11	100	93.548	ENSSARG00000007065	TFIP11	100	83.954	Sorex_araneus
ENSMUSG00000029345	Tfip11	99	96.739	ENSSPUG00000007618	TFIP11	98	85.007	Sphenodon_punctatus
ENSMUSG00000029345	Tfip11	95	85.227	ENSSPAG00000017719	tfip11	100	67.568	Stegastes_partitus
ENSMUSG00000029345	Tfip11	100	98.925	ENSSSCG00000009962	TFIP11	100	92.363	Sus_scrofa
ENSMUSG00000029345	Tfip11	99	94.565	ENSTGUG00000007710	TFIP11	100	84.148	Taeniopygia_guttata
ENSMUSG00000029345	Tfip11	98	83.516	ENSTRUG00000016348	tfip11	100	62.898	Takifugu_rubripes
ENSMUSG00000029345	Tfip11	98	83.516	ENSTNIG00000015914	tfip11	100	65.808	Tetraodon_nigroviridis
ENSMUSG00000029345	Tfip11	100	98.925	ENSTBEG00000007895	TFIP11	74	96.793	Tupaia_belangeri
ENSMUSG00000029345	Tfip11	100	97.849	ENSTTRG00000009421	TFIP11	68	96.656	Tursiops_truncatus
ENSMUSG00000029345	Tfip11	100	98.925	ENSUAMG00000016248	TFIP11	93	90.318	Ursus_americanus
ENSMUSG00000029345	Tfip11	100	98.925	ENSUMAG00000015595	TFIP11	100	90.573	Ursus_maritimus
ENSMUSG00000029345	Tfip11	100	98.925	ENSVVUG00000015797	TFIP11	97	88.710	Vulpes_vulpes
ENSMUSG00000029345	Tfip11	98	89.011	ENSXETG00000003784	tfip11	99	79.209	Xenopus_tropicalis
ENSMUSG00000029345	Tfip11	98	82.418	ENSXCOG00000016947	tfip11	100	67.099	Xiphophorus_couchianus
ENSMUSG00000029345	Tfip11	98	83.516	ENSXMAG00000007524	tfip11	100	67.256	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000390	spliceosomal complex disassembly	21873635.	IBA	Process
GO:0000390	spliceosomal complex disassembly	19857462.	IMP	Process
GO:0000390	spliceosomal complex disassembly	-	ISO	Process
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005515	protein binding	10806191.19165350.	IPI	Function
GO:0005634	nucleus	12533513.	ISA	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	12533513.	ISA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0030154	cell differentiation	11063033.	NAS	Process
GO:0030198	extracellular matrix organization	11063033.	NAS	Process
GO:0031012	extracellular matrix	10806191.	IDA	Component
GO:0031214	biomineral tissue development	-	IEA	Process
GO:0031333	negative regulation of protein complex assembly	-	ISO	Process
GO:0032091	negative regulation of protein binding	-	ISO	Process
GO:0071008	U2-type post-mRNA release spliceosomal complex	21873635.	IBA	Component
GO:0071008	U2-type post-mRNA release spliceosomal complex	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component