EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000029389 (Gene tree)
Gene ID
67848
Gene Symbol
Ddx55
Alias
2810021H22Rik
Full Name
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
16797 bases
Position
chr5:124552864-124569660
Accession
1915098
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000107065ResIIIPF04851.159.8e-0711
ENSMUSP00000070279ResIIIPF04851.151e-0611
ENSMUSP00000107065DEADPF00270.291.3e-4111
ENSMUSP00000070279DEADPF00270.291.3e-4111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000196021-1430--- (aa)--
ENSMUST00000142451-824--- (aa)--
ENSMUST00000131631-3516-ENSMUSP00000143462135 (aa)-A0A0G2JG82
ENSMUST00000071057-2799-ENSMUSP00000070279600 (aa)-Q6ZPL9
ENSMUST00000136067-445--- (aa)--
ENSMUST00000111438-2737-ENSMUSP00000107065596 (aa)-E9Q9T6
ENSMUST00000144433-477--- (aa)--
Gene Model
Click here to download ENSMUSG00000029389's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029389's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000029389Ddx557538.631ENSMUSG00000053289Ddx105038.631
ENSMUSG00000029389Ddx556030.137ENSMUSG00000020719Ddx55630.137
ENSMUSG00000029389Ddx555935.635ENSMUSG00000021494Ddx415535.440
ENSMUSG00000029389Ddx556434.243ENSMUSG00000039224D1Pas15634.243
ENSMUSG00000029389Ddx556032.687ENSMUSG00000055065Ddx177431.153
ENSMUSG00000029389Ddx555833.056ENSMUSG00000057788Ddx497033.056
ENSMUSG00000029389Ddx557936.042ENSMUSG00000001674Ddx186836.192
ENSMUSG00000029389Ddx556433.747ENSMUSG00000000787Ddx3x5633.663
ENSMUSG00000029389Ddx557531.528ENSMUSG00000026806Ddx317431.783
ENSMUSG00000029389Ddx556640.449ENSMUSG00000041645Ddx245240.449
ENSMUSG00000029389Ddx556330.750ENSMUSG00000020677Ddx526230.750
ENSMUSG00000029389Ddx555935.977ENSMUSG00000030204Ddx478135.977
ENSMUSG00000029389Ddx556030.886ENSMUSG00000045538Ddx286930.886
ENSMUSG00000029389Ddx555930.362ENSMUSG00000022884Eif4a29330.362
ENSMUSG00000029389Ddx556433.499ENSMUSG00000069045Ddx3y5633.251
ENSMUSG00000029389Ddx555931.429ENSMUSG00000026404Ddx595431.429
ENSMUSG00000029389Ddx555930.833ENSMUSG00000059796Eif4a19530.244
ENSMUSG00000029389Ddx555932.479ENSMUSG00000032097Ddx66832.479
ENSMUSG00000029389Ddx556032.044ENSMUSG00000070291Ddx435332.044
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000029389Ddx559991.319ENSG00000111364DDX559694.536Homo_sapiens
ENSMUSG00000029389Ddx559873.818ENSAPOG00000013126ddx559973.818Acanthochromis_polyacanthus
ENSMUSG00000029389Ddx559988.815ENSAMEG00000015274DDX559988.815Ailuropoda_melanoleuca
ENSMUSG00000029389Ddx559774.315ENSACIG00000007580ddx559974.315Amphilophus_citrinellus
ENSMUSG00000029389Ddx559774.017ENSAOCG00000012037ddx559274.017Amphiprion_ocellaris
ENSMUSG00000029389Ddx559774.188ENSAPEG00000011003ddx559274.188Amphiprion_percula
ENSMUSG00000029389Ddx559971.786ENSATEG00000004029ddx559971.786Anabas_testudineus
ENSMUSG00000029389Ddx559477.778ENSAPLG00000015032DDX559977.562Anas_platyrhynchos
ENSMUSG00000029389Ddx559783.590ENSACAG00000015296DDX559883.590Anolis_carolinensis
ENSMUSG00000029389Ddx559387.819ENSANAG00000034064DDX5510087.819Aotus_nancymaae
ENSMUSG00000029389Ddx559773.801ENSACLG00000024691ddx559973.801Astatotilapia_calliptera
ENSMUSG00000029389Ddx559670.139ENSAMXG00000019947ddx559570.139Astyanax_mexicanus
ENSMUSG00000029389Ddx559989.500ENSBTAG00000007266DDX559984.667Bos_taurus
ENSMUSG00000029389Ddx559537.037WBGene00013983ZK512.29837.187Caenorhabditis_elegans
ENSMUSG00000029389Ddx556186.905ENSCJAG00000045019-9983.495Callithrix_jacchus
ENSMUSG00000029389Ddx5510090.000ENSCJAG00000020471-10090.000Callithrix_jacchus
ENSMUSG00000029389Ddx559988.481ENSCAFG00000007452DDX559988.481Canis_familiaris
ENSMUSG00000029389Ddx559089.114ENSCAFG00020015254DDX559489.655Canis_lupus_dingo
ENSMUSG00000029389Ddx559989.667ENSCHIG00000020402DDX559989.667Capra_hircus
ENSMUSG00000029389Ddx559990.651ENSTSYG00000007427DDX559990.651Carlito_syrichta
ENSMUSG00000029389Ddx559786.379ENSCAPG00000005124DDX559887.170Cavia_aperea
ENSMUSG00000029389Ddx559987.646ENSCPOG00000010015DDX559987.646Cavia_porcellus
ENSMUSG00000029389Ddx5510090.167ENSCCAG00000021652DDX5510090.167Cebus_capucinus
ENSMUSG00000029389Ddx559986.513ENSCATG00000034315DDX559986.513Cercocebus_atys
ENSMUSG00000029389Ddx559988.796ENSCLAG00000011203DDX559988.796Chinchilla_lanigera
ENSMUSG00000029389Ddx559990.818ENSCSAG00000002057DDX559990.818Chlorocebus_sabaeus
ENSMUSG00000029389Ddx555792.857ENSCHOG00000006189-6092.857Choloepus_hoffmanni
ENSMUSG00000029389Ddx558787.165ENSCPBG00000025960DDX559687.165Chrysemys_picta_bellii
ENSMUSG00000029389Ddx559654.146ENSCING00000009622-9853.638Ciona_intestinalis
ENSMUSG00000029389Ddx559552.487ENSCSAVG00000003375-9752.677Ciona_savignyi
ENSMUSG00000029389Ddx559991.319ENSCANG00000000156DDX559991.319Colobus_angolensis_palliatus
ENSMUSG00000029389Ddx5510095.500ENSCGRG00001001652Ddx5510095.500Cricetulus_griseus_chok1gshd
ENSMUSG00000029389Ddx5510095.333ENSCGRG00000014742Ddx5510095.333Cricetulus_griseus_crigri
ENSMUSG00000029389Ddx559872.526ENSCSEG00000012161ddx559872.526Cynoglossus_semilaevis
ENSMUSG00000029389Ddx559773.675ENSCVAG00000006635ddx559973.675Cyprinodon_variegatus
ENSMUSG00000029389Ddx559775.514ENSDARG00000009864ddx559875.514Danio_rerio
ENSMUSG00000029389Ddx559990.333ENSDNOG00000005167DDX559990.333Dasypus_novemcinctus
ENSMUSG00000029389Ddx559547.954FBgn0037561CG96309848.515Drosophila_melanogaster
ENSMUSG00000029389Ddx559474.600ENSETEG00000001826DDX559974.600Echinops_telfairi
ENSMUSG00000029389Ddx559566.325ENSEBUG00000007071ddx559866.302Eptatretus_burgeri
ENSMUSG00000029389Ddx559990.635ENSEASG00005012650DDX559990.635Equus_asinus_asinus
ENSMUSG00000029389Ddx558791.954ENSECAG00000011237DDX558491.954Equus_caballus
ENSMUSG00000029389Ddx5510078.500ENSEEUG00000006313DDX5510078.500Erinaceus_europaeus
ENSMUSG00000029389Ddx559772.696ENSELUG00000002616ddx559772.696Esox_lucius
ENSMUSG00000029389Ddx559989.149ENSFCAG00000003770DDX559989.149Felis_catus
ENSMUSG00000029389Ddx5510082.667ENSFALG00000009300DDX5510082.667Ficedula_albicollis
ENSMUSG00000029389Ddx559988.127ENSFDAG00000004680DDX559988.127Fukomys_damarensis
ENSMUSG00000029389Ddx559772.945ENSFHEG00000007912ddx559972.945Fundulus_heteroclitus
ENSMUSG00000029389Ddx559669.603ENSGMOG00000017762ddx559669.775Gadus_morhua
ENSMUSG00000029389Ddx559784.337ENSGALG00000003298DDX559983.904Gallus_gallus
ENSMUSG00000029389Ddx559773.196ENSGAFG00000004388ddx559973.196Gambusia_affinis
ENSMUSG00000029389Ddx559872.789ENSGACG00000015591ddx559572.789Gasterosteus_aculeatus
ENSMUSG00000029389Ddx559085.793ENSGAGG00000014403DDX559686.398Gopherus_agassizii
ENSMUSG00000029389Ddx559991.319ENSGGOG00000026102DDX559991.319Gorilla_gorilla
ENSMUSG00000029389Ddx559773.801ENSHBUG00000011523ddx559973.801Haplochromis_burtoni
ENSMUSG00000029389Ddx559987.960ENSHGLG00000019202DDX559987.960Heterocephalus_glaber_female
ENSMUSG00000029389Ddx559987.960ENSHGLG00100019440DDX559987.960Heterocephalus_glaber_male
ENSMUSG00000029389Ddx559765.068ENSHCOG00000004710ddx559965.068Hippocampus_comes
ENSMUSG00000029389Ddx559773.666ENSIPUG00000014551ddx559673.666Ictalurus_punctatus
ENSMUSG00000029389Ddx559989.816ENSSTOG00000006121DDX559989.816Ictidomys_tridecemlineatus
ENSMUSG00000029389Ddx559990.985ENSJJAG00000013401Ddx559990.985Jaculus_jaculus
ENSMUSG00000029389Ddx559773.585ENSKMAG00000022006ddx559973.585Kryptolebias_marmoratus
ENSMUSG00000029389Ddx559971.833ENSLBEG00000021815ddx559971.833Labrus_bergylta
ENSMUSG00000029389Ddx559780.517ENSLACG00000017050DDX559780.517Latimeria_chalumnae
ENSMUSG00000029389Ddx5510074.333ENSLOCG00000005828ddx559974.333Lepisosteus_oculatus
ENSMUSG00000029389Ddx559991.486ENSLAFG00000007293DDX5510091.486Loxodonta_africana
ENSMUSG00000029389Ddx559991.152ENSMFAG00000038165DDX559991.152Macaca_fascicularis
ENSMUSG00000029389Ddx559991.486ENSMMUG00000013178DDX559991.486Macaca_mulatta
ENSMUSG00000029389Ddx559991.152ENSMNEG00000028630DDX559991.152Macaca_nemestrina
ENSMUSG00000029389Ddx5510091.333ENSMLEG00000039187DDX5510091.333Mandrillus_leucophaeus
ENSMUSG00000029389Ddx559675.347ENSMAMG00000011297ddx559675.087Mastacembelus_armatus
ENSMUSG00000029389Ddx559773.801ENSMZEG00005008047ddx559973.801Maylandia_zebra
ENSMUSG00000029389Ddx559979.431ENSMGAG00000003185DDX559979.431Meleagris_gallopavo
ENSMUSG00000029389Ddx5510096.667ENSMAUG00000020054Ddx5510096.667Mesocricetus_auratus
ENSMUSG00000029389Ddx5510083.361ENSMICG00000006477DDX5510083.361Microcebus_murinus
ENSMUSG00000029389Ddx5510096.333ENSMOCG00000021289Ddx5510096.333Microtus_ochrogaster
ENSMUSG00000029389Ddx559773.630ENSMMOG00000009411ddx559773.630Mola_mola
ENSMUSG00000029389Ddx559487.766ENSMODG00000012519DDX559787.766Monodelphis_domestica
ENSMUSG00000029389Ddx559968.614ENSMALG00000018543ddx559968.614Monopterus_albus
ENSMUSG00000029389Ddx5510095.556MGP_CAROLIEiJ_G0027755-9999.775Mus_caroli
ENSMUSG00000029389Ddx5510094.333MGP_PahariEiJ_G0024335Ddx5510094.333Mus_pahari
ENSMUSG00000029389Ddx5510099.500MGP_SPRETEiJ_G0028753Ddx5510099.500Mus_spretus
ENSMUSG00000029389Ddx559984.667ENSMPUG00000001505DDX559984.667Mustela_putorius_furo
ENSMUSG00000029389Ddx558776.571ENSMLUG00000025148-9676.571Myotis_lucifugus
ENSMUSG00000029389Ddx5510079.667ENSMLUG00000001265-10078.833Myotis_lucifugus
ENSMUSG00000029389Ddx559992.988ENSNGAG00000020564Ddx559992.988Nannospalax_galili
ENSMUSG00000029389Ddx559773.801ENSNBRG00000018748ddx559973.801Neolamprologus_brichardi
ENSMUSG00000029389Ddx559991.653ENSNLEG00000001658DDX5510091.653Nomascus_leucogenys
ENSMUSG00000029389Ddx559982.972ENSMEUG00000013689DDX559982.972Notamacropus_eugenii
ENSMUSG00000029389Ddx5510087.333ENSOPRG00000000850DDX5510087.333Ochotona_princeps
ENSMUSG00000029389Ddx559986.555ENSODEG00000009632-9986.949Octodon_degus
ENSMUSG00000029389Ddx559372.679ENSODEG00000016592-10073.393Octodon_degus
ENSMUSG00000029389Ddx559773.459ENSONIG00000015311ddx559673.459Oreochromis_niloticus
ENSMUSG00000029389Ddx559388.193ENSOANG00000015332DDX559988.193Ornithorhynchus_anatinus
ENSMUSG00000029389Ddx559988.796ENSOCUG00000003456DDX559988.796Oryctolagus_cuniculus
ENSMUSG00000029389Ddx559772.945ENSORLG00000029482ddx559872.945Oryzias_latipes
ENSMUSG00000029389Ddx559772.774ENSORLG00015004885ddx559872.774Oryzias_latipes_hsok
ENSMUSG00000029389Ddx559874.232ENSOMEG00000023619ddx559974.232Oryzias_melastigma
ENSMUSG00000029389Ddx5510089.597ENSOGAG00000009195DDX559989.597Otolemur_garnettii
ENSMUSG00000029389Ddx559990.000ENSOARG00000003364DDX559990.000Ovis_aries
ENSMUSG00000029389Ddx559991.152ENSPPAG00000005988DDX559991.152Pan_paniscus
ENSMUSG00000029389Ddx559989.482ENSPPRG00000012157DDX559989.482Panthera_pardus
ENSMUSG00000029389Ddx559489.698ENSPTIG00000011490DDX559489.698Panthera_tigris_altaica
ENSMUSG00000029389Ddx559990.985ENSPTRG00000005601DDX559990.985Pan_troglodytes
ENSMUSG00000029389Ddx559991.486ENSPANG00000007905DDX559991.486Papio_anubis
ENSMUSG00000029389Ddx559874.490ENSPKIG00000023661ddx5510074.490Paramormyrops_kingsleyae
ENSMUSG00000029389Ddx559383.244ENSPSIG00000012901DDX559983.729Pelodiscus_sinensis
ENSMUSG00000029389Ddx559071.956ENSPMGG00000017224ddx559672.031Periophthalmus_magnuspinnatus
ENSMUSG00000029389Ddx5510095.833ENSPEMG00000018052Ddx5510095.833Peromyscus_maniculatus_bairdii
ENSMUSG00000029389Ddx558566.667ENSPMAG00000007486ddx559966.409Petromyzon_marinus
ENSMUSG00000029389Ddx558789.464ENSPCIG00000010973DDX559489.464Phascolarctos_cinereus
ENSMUSG00000029389Ddx559773.288ENSPFOG00000006970ddx559173.288Poecilia_formosa
ENSMUSG00000029389Ddx559773.196ENSPLAG00000014735ddx559973.196Poecilia_latipinna
ENSMUSG00000029389Ddx559773.368ENSPMEG00000020635ddx559973.368Poecilia_mexicana
ENSMUSG00000029389Ddx559772.633ENSPREG00000016644ddx559972.633Poecilia_reticulata
ENSMUSG00000029389Ddx559989.649ENSPPYG00000005091DDX559989.149Pongo_abelii
ENSMUSG00000029389Ddx559988.982ENSPCAG00000014127DDX559988.982Procavia_capensis
ENSMUSG00000029389Ddx5510090.667ENSPCOG00000011189DDX5510090.667Propithecus_coquereli
ENSMUSG00000029389Ddx559987.960ENSPVAG00000015321DDX559987.960Pteropus_vampyrus
ENSMUSG00000029389Ddx559773.630ENSPNYG00000003669ddx559973.630Pundamilia_nyererei
ENSMUSG00000029389Ddx559675.779ENSPNAG00000012855ddx559675.779Pygocentrus_nattereri
ENSMUSG00000029389Ddx5510097.167ENSRNOG00000001043Ddx5510097.167Rattus_norvegicus
ENSMUSG00000029389Ddx559990.985ENSRBIG00000044699DDX559990.985Rhinopithecus_bieti
ENSMUSG00000029389Ddx559991.319ENSRROG00000024824DDX559991.319Rhinopithecus_roxellana
ENSMUSG00000029389Ddx558939.405YFL002C-8839.455Saccharomyces_cerevisiae
ENSMUSG00000029389Ddx5510090.333ENSSBOG00000024833DDX5510090.333Saimiri_boliviensis_boliviensis
ENSMUSG00000029389Ddx559487.788ENSSHAG00000015820DDX559987.788Sarcophilus_harrisii
ENSMUSG00000029389Ddx559676.857ENSSFOG00015017496ddx559576.857Scleropages_formosus
ENSMUSG00000029389Ddx559773.254ENSSMAG00000010441ddx559773.254Scophthalmus_maximus
ENSMUSG00000029389Ddx559972.379ENSSDUG00000023568ddx559972.379Seriola_dumerili
ENSMUSG00000029389Ddx559768.547ENSSLDG00000011299ddx559668.547Seriola_lalandi_dorsalis
ENSMUSG00000029389Ddx559384.286ENSSARG00000003842DDX5510084.643Sorex_araneus
ENSMUSG00000029389Ddx559883.590ENSSPUG00000012798DDX559883.590Sphenodon_punctatus
ENSMUSG00000029389Ddx559773.630ENSSPAG00000011806ddx559773.630Stegastes_partitus
ENSMUSG00000029389Ddx558791.762ENSSSCG00000009771DDX559491.762Sus_scrofa
ENSMUSG00000029389Ddx559782.902ENSTGUG00000005302-9982.034Taeniopygia_guttata
ENSMUSG00000029389Ddx559772.089ENSTRUG00000018525ddx559772.089Takifugu_rubripes
ENSMUSG00000029389Ddx5510070.266ENSTNIG00000013515DDX5510070.266Tetraodon_nigroviridis
ENSMUSG00000029389Ddx557483.333ENSTBEG00000010822DDX5510083.333Tupaia_belangeri
ENSMUSG00000029389Ddx559989.983ENSTTRG00000007251DDX559989.983Tursiops_truncatus
ENSMUSG00000029389Ddx559988.314ENSUAMG00000012589DDX559988.314Ursus_americanus
ENSMUSG00000029389Ddx559388.489ENSUMAG00000003869DDX559988.489Ursus_maritimus
ENSMUSG00000029389Ddx559384.353ENSVPAG00000007028DDX559984.353Vicugna_pacos
ENSMUSG00000029389Ddx559889.231ENSVVUG00000027506DDX559889.483Vulpes_vulpes
ENSMUSG00000029389Ddx559878.974ENSXETG00000005825ddx559878.974Xenopus_tropicalis
ENSMUSG00000029389Ddx559773.540ENSXCOG00000010120ddx559973.540Xiphophorus_couchianus
ENSMUSG00000029389Ddx559773.711ENSXMAG00000011731ddx559973.711Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0016787hydrolase activity-IEAFunction

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