EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029402 (Gene tree)
Gene ID: 76167
Gene Symbol: Snrnp35
Alias: 6330548G22Rik
Full Name: small nuclear ribonucleoprotein 35 (U11/U12)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 7991 bases
Position: chr5:124483134-124491124
Accession: 1923417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000121120	RRM_1	PF00076.22	1.4e-16	1	1
ENSMUSP00000031349	RRM_1	PF00076.22	1.7e-16	1	1
ENSMUSP00000107080	RRM_1	PF00076.22	1.7e-16	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000031349	-	1115	XM_006530495	ENSMUSP00000031349	244 (aa)	XP_006530558	Q9D384
ENSMUST00000111453	-	1181	XM_006530494	ENSMUSP00000107080	244 (aa)	XP_006530557	Q9D384
ENSMUST00000136567	-	449	-	ENSMUSP00000121120	121 (aa)	-	D3YTL6

Gene Model

Click here to download ENSMUSG00000029402's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029402's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000029402	Snrnp35	59	33.803	ENSMUSG00000028546	Elavl4	57	37.037
ENSMUSG00000029402	Snrnp35	60	37.500	ENSMUSG00000008489	Elavl2	67	35.714
ENSMUSG00000029402	Snrnp35	60	34.211	ENSMUSG00000038374	Rbm8a	70	30.000
ENSMUSG00000029402	Snrnp35	55	36.364	ENSMUSG00000031134	Rbmx	71	35.616
ENSMUSG00000029402	Snrnp35	55	34.848	ENSMUSG00000031167	Rbm3	73	33.333
ENSMUSG00000029402	Snrnp35	61	48.649	ENSMUSG00000063511	Snrnp70	71	46.667
ENSMUSG00000029402	Snrnp35	53	35.294	ENSMUSG00000022283	Pabpc1	54	35.294

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029402	Snrnp35	100	95.868	ENSG00000184209	SNRNP35	100	89.024	Homo_sapiens
ENSMUSG00000029402	Snrnp35	100	96.694	ENSAMEG00000019650	SNRNP35	99	89.431	Ailuropoda_melanoleuca
ENSMUSG00000029402	Snrnp35	100	80.165	ENSACIG00000003238	snrnp35	80	82.353	Amphilophus_citrinellus
ENSMUSG00000029402	Snrnp35	100	76.860	ENSAOCG00000007701	snrnp35	79	80.000	Amphiprion_ocellaris
ENSMUSG00000029402	Snrnp35	100	76.860	ENSAPEG00000023725	snrnp35	82	78.286	Amphiprion_percula
ENSMUSG00000029402	Snrnp35	100	77.686	ENSATEG00000021269	snrnp35	88	79.412	Anabas_testudineus
ENSMUSG00000029402	Snrnp35	100	90.083	ENSAPLG00000015654	SNRNP35	90	80.717	Anas_platyrhynchos
ENSMUSG00000029402	Snrnp35	100	86.777	ENSACAG00000015421	SNRNP35	82	78.802	Anolis_carolinensis
ENSMUSG00000029402	Snrnp35	100	94.215	ENSANAG00000025109	SNRNP35	97	87.854	Aotus_nancymaae
ENSMUSG00000029402	Snrnp35	100	79.339	ENSACLG00000020890	snrnp35	81	81.765	Astatotilapia_calliptera
ENSMUSG00000029402	Snrnp35	100	79.339	ENSACLG00000020994	SNRNP35	81	81.765	Astatotilapia_calliptera
ENSMUSG00000029402	Snrnp35	100	76.033	ENSAMXG00000026163	snrnp35	80	80.357	Astyanax_mexicanus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSBTAG00000008060	SNRNP35	100	89.837	Bos_taurus
ENSMUSG00000029402	Snrnp35	100	93.388	ENSCJAG00000007131	SNRNP35	98	89.024	Callithrix_jacchus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSCAFG00000007484	SNRNP35	100	88.211	Canis_familiaris
ENSMUSG00000029402	Snrnp35	100	95.868	ENSCAFG00020015272	-	100	88.211	Canis_lupus_dingo
ENSMUSG00000029402	Snrnp35	100	95.868	ENSCHIG00000006364	SNRNP35	100	89.837	Capra_hircus
ENSMUSG00000029402	Snrnp35	100	96.694	ENSTSYG00000034104	SNRNP35	99	90.244	Carlito_syrichta
ENSMUSG00000029402	Snrnp35	100	95.041	ENSCPOG00000002548	SNRNP35	100	87.398	Cavia_porcellus
ENSMUSG00000029402	Snrnp35	100	94.215	ENSCCAG00000001685	SNRNP35	98	87.854	Cebus_capucinus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSCATG00000021946	SNRNP35	99	89.024	Cercocebus_atys
ENSMUSG00000029402	Snrnp35	100	94.215	ENSCLAG00000010232	SNRNP35	100	87.805	Chinchilla_lanigera
ENSMUSG00000029402	Snrnp35	100	95.868	ENSCSAG00000018950	SNRNP35	100	88.618	Chlorocebus_sabaeus
ENSMUSG00000029402	Snrnp35	100	96.694	ENSCHOG00000006263	SNRNP35	99	91.057	Choloepus_hoffmanni
ENSMUSG00000029402	Snrnp35	100	86.777	ENSCPBG00000025965	SNRNP35	91	74.797	Chrysemys_picta_bellii
ENSMUSG00000029402	Snrnp35	95	53.913	ENSCSAVG00000000748	-	94	57.396	Ciona_savignyi
ENSMUSG00000029402	Snrnp35	100	95.041	ENSCANG00000025364	SNRNP35	98	88.211	Colobus_angolensis_palliatus
ENSMUSG00000029402	Snrnp35	100	99.174	ENSCGRG00001012630	Snrnp35	100	95.935	Cricetulus_griseus_chok1gshd
ENSMUSG00000029402	Snrnp35	100	99.174	ENSCGRG00000002063	Snrnp35	100	95.935	Cricetulus_griseus_crigri
ENSMUSG00000029402	Snrnp35	98	75.630	ENSDARG00000099913	snrnp35	81	76.786	Danio_rerio
ENSMUSG00000029402	Snrnp35	100	96.694	ENSDNOG00000038603	SNRNP35	100	91.870	Dasypus_novemcinctus
ENSMUSG00000029402	Snrnp35	100	96.694	ENSDORG00000001859	Snrnp35	100	90.650	Dipodomys_ordii
ENSMUSG00000029402	Snrnp35	98	51.695	ENSEBUG00000003535	snrnp35	62	60.241	Eptatretus_burgeri
ENSMUSG00000029402	Snrnp35	100	96.694	ENSEASG00005012617	SNRNP35	99	90.574	Equus_asinus_asinus
ENSMUSG00000029402	Snrnp35	100	96.694	ENSECAG00000006080	SNRNP35	99	90.574	Equus_caballus
ENSMUSG00000029402	Snrnp35	100	94.215	ENSEEUG00000011544	SNRNP35	80	91.878	Erinaceus_europaeus
ENSMUSG00000029402	Snrnp35	100	79.339	ENSELUG00000000071	snrnp35	72	79.885	Esox_lucius
ENSMUSG00000029402	Snrnp35	100	95.868	ENSFCAG00000001159	SNRNP35	98	89.431	Felis_catus
ENSMUSG00000029402	Snrnp35	100	90.083	ENSFALG00000014650	SNRNP35	100	76.639	Ficedula_albicollis
ENSMUSG00000029402	Snrnp35	100	95.041	ENSFDAG00000018743	SNRNP35	100	78.862	Fukomys_damarensis
ENSMUSG00000029402	Snrnp35	100	75.207	ENSGMOG00000002299	snrnp35	73	77.059	Gadus_morhua
ENSMUSG00000029402	Snrnp35	100	90.083	ENSGALG00000003318	SNRNP35	91	76.033	Gallus_gallus
ENSMUSG00000029402	Snrnp35	100	75.207	ENSGACG00000020631	snrnp35	73	77.647	Gasterosteus_aculeatus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSGGOG00000015936	SNRNP35	98	89.024	Gorilla_gorilla
ENSMUSG00000029402	Snrnp35	100	79.339	ENSHBUG00000015853	snrnp35	80	81.765	Haplochromis_burtoni
ENSMUSG00000029402	Snrnp35	100	95.041	ENSHGLG00000017961	SNRNP35	100	88.211	Heterocephalus_glaber_female
ENSMUSG00000029402	Snrnp35	100	95.041	ENSHGLG00100019252	SNRNP35	100	88.211	Heterocephalus_glaber_male
ENSMUSG00000029402	Snrnp35	100	71.901	ENSIPUG00000016053	snrnp35	66	74.857	Ictalurus_punctatus
ENSMUSG00000029402	Snrnp35	100	92.562	ENSSTOG00000025145	SNRNP35	100	84.553	Ictidomys_tridecemlineatus
ENSMUSG00000029402	Snrnp35	100	98.347	ENSJJAG00000013421	Snrnp35	97	91.463	Jaculus_jaculus
ENSMUSG00000029402	Snrnp35	100	85.950	ENSLACG00000017176	SNRNP35	87	72.131	Latimeria_chalumnae
ENSMUSG00000029402	Snrnp35	100	78.512	ENSLOCG00000018154	snrnp35	64	80.460	Lepisosteus_oculatus
ENSMUSG00000029402	Snrnp35	100	94.215	ENSLAFG00000022302	SNRNP35	100	89.431	Loxodonta_africana
ENSMUSG00000029402	Snrnp35	100	95.868	ENSMFAG00000008986	SNRNP35	99	88.618	Macaca_fascicularis
ENSMUSG00000029402	Snrnp35	100	95.868	ENSMMUG00000008411	SNRNP35	99	88.618	Macaca_mulatta
ENSMUSG00000029402	Snrnp35	100	95.868	ENSMNEG00000018139	SNRNP35	99	88.618	Macaca_nemestrina
ENSMUSG00000029402	Snrnp35	100	95.868	ENSMLEG00000040998	SNRNP35	98	89.024	Mandrillus_leucophaeus
ENSMUSG00000029402	Snrnp35	100	80.165	ENSMAMG00000018927	snrnp35	89	70.833	Mastacembelus_armatus
ENSMUSG00000029402	Snrnp35	96	70.690	ENSMZEG00005018947	-	78	75.758	Maylandia_zebra
ENSMUSG00000029402	Snrnp35	100	79.339	ENSMZEG00005018928	snrnp35	81	81.765	Maylandia_zebra
ENSMUSG00000029402	Snrnp35	100	90.083	ENSMGAG00000003241	SNRNP35	100	76.639	Meleagris_gallopavo
ENSMUSG00000029402	Snrnp35	100	99.174	ENSMAUG00000001690	Snrnp35	100	97.154	Mesocricetus_auratus
ENSMUSG00000029402	Snrnp35	100	95.041	ENSMICG00000026512	SNRNP35	98	89.837	Microcebus_murinus
ENSMUSG00000029402	Snrnp35	100	97.521	ENSMOCG00000000548	Snrnp35	100	95.935	Microtus_ochrogaster
ENSMUSG00000029402	Snrnp35	100	77.686	ENSMMOG00000018779	snrnp35	72	80.000	Mola_mola
ENSMUSG00000029402	Snrnp35	100	87.603	ENSMODG00000012481	SNRNP35	97	87.931	Monodelphis_domestica
ENSMUSG00000029402	Snrnp35	100	99.180	MGP_CAROLIEiJ_G0027752	Snrnp35	100	99.180	Mus_caroli
ENSMUSG00000029402	Snrnp35	100	100.000	MGP_PahariEiJ_G0024332	Snrnp35	100	100.000	Mus_pahari
ENSMUSG00000029402	Snrnp35	100	100.000	MGP_SPRETEiJ_G0028751	Snrnp35	100	100.000	Mus_spretus
ENSMUSG00000029402	Snrnp35	100	96.694	ENSMPUG00000019392	SNRNP35	100	89.431	Mustela_putorius_furo
ENSMUSG00000029402	Snrnp35	100	95.041	ENSMLUG00000025311	SNRNP35	100	87.398	Myotis_lucifugus
ENSMUSG00000029402	Snrnp35	100	95.041	ENSNGAG00000010711	Snrnp35	100	91.935	Nannospalax_galili
ENSMUSG00000029402	Snrnp35	100	95.868	ENSNLEG00000029859	SNRNP35	98	89.024	Nomascus_leucogenys
ENSMUSG00000029402	Snrnp35	100	95.041	ENSOPRG00000011119	SNRNP35	99	86.585	Ochotona_princeps
ENSMUSG00000029402	Snrnp35	100	95.868	ENSODEG00000019870	SNRNP35	100	89.431	Octodon_degus
ENSMUSG00000029402	Snrnp35	100	79.339	ENSONIG00000021361	snrnp35	72	81.765	Oreochromis_niloticus
ENSMUSG00000029402	Snrnp35	100	88.430	ENSOANG00000002697	SNRNP35	95	81.739	Ornithorhynchus_anatinus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSOCUG00000021248	SNRNP35	100	87.398	Oryctolagus_cuniculus
ENSMUSG00000029402	Snrnp35	100	79.339	ENSORLG00000005673	snrnp35	79	82.738	Oryzias_latipes
ENSMUSG00000029402	Snrnp35	100	80.165	ENSORLG00015014439	snrnp35	82	83.333	Oryzias_latipes_hsok
ENSMUSG00000029402	Snrnp35	100	95.041	ENSOGAG00000011301	SNRNP35	100	90.650	Otolemur_garnettii
ENSMUSG00000029402	Snrnp35	100	95.868	ENSOARG00000004583	SNRNP35	100	89.837	Ovis_aries
ENSMUSG00000029402	Snrnp35	100	95.868	ENSPPAG00000000480	SNRNP35	98	88.618	Pan_paniscus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSPPRG00000013139	SNRNP35	98	89.024	Panthera_pardus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSPTIG00000015832	SNRNP35	98	89.024	Panthera_tigris_altaica
ENSMUSG00000029402	Snrnp35	100	95.868	ENSPTRG00000023573	SNRNP35	98	88.618	Pan_troglodytes
ENSMUSG00000029402	Snrnp35	100	95.868	ENSPANG00000019739	SNRNP35	98	89.024	Papio_anubis
ENSMUSG00000029402	Snrnp35	100	76.860	ENSPKIG00000005221	snrnp35	81	79.882	Paramormyrops_kingsleyae
ENSMUSG00000029402	Snrnp35	100	87.603	ENSPSIG00000000450	SNRNP35	91	74.797	Pelodiscus_sinensis
ENSMUSG00000029402	Snrnp35	100	85.950	ENSPCIG00000010978	SNRNP35	93	78.455	Phascolarctos_cinereus
ENSMUSG00000029402	Snrnp35	100	81.818	ENSPFOG00000019881	snrnp35	76	84.524	Poecilia_formosa
ENSMUSG00000029402	Snrnp35	100	95.868	ENSPPYG00000005088	SNRNP35	98	89.024	Pongo_abelii
ENSMUSG00000029402	Snrnp35	100	94.215	ENSPCAG00000011478	SNRNP35	99	87.805	Procavia_capensis
ENSMUSG00000029402	Snrnp35	100	95.868	ENSPCOG00000009946	SNRNP35	99	90.650	Propithecus_coquereli
ENSMUSG00000029402	Snrnp35	100	96.694	ENSPVAG00000015317	SNRNP35	99	89.837	Pteropus_vampyrus
ENSMUSG00000029402	Snrnp35	100	79.339	ENSPNAG00000020589	snrnp35	69	79.661	Pygocentrus_nattereri
ENSMUSG00000029402	Snrnp35	100	99.174	ENSRNOG00000001060	Snrnp35	100	97.951	Rattus_norvegicus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSRBIG00000043111	SNRNP35	98	88.618	Rhinopithecus_bieti
ENSMUSG00000029402	Snrnp35	100	95.868	ENSRROG00000032878	SNRNP35	98	88.618	Rhinopithecus_roxellana
ENSMUSG00000029402	Snrnp35	100	94.215	ENSSBOG00000012231	SNRNP35	98	87.854	Saimiri_boliviensis_boliviensis
ENSMUSG00000029402	Snrnp35	100	84.298	ENSSHAG00000001216	-	100	74.797	Sarcophilus_harrisii
ENSMUSG00000029402	Snrnp35	100	85.124	ENSSHAG00000015558	-	100	76.829	Sarcophilus_harrisii
ENSMUSG00000029402	Snrnp35	100	77.686	ENSSFOG00015003785	snrnp35	90	81.065	Scleropages_formosus
ENSMUSG00000029402	Snrnp35	100	77.686	ENSSLDG00000017209	snrnp35	80	80.000	Seriola_lalandi_dorsalis
ENSMUSG00000029402	Snrnp35	100	95.041	ENSSARG00000012656	SNRNP35	99	86.992	Sorex_araneus
ENSMUSG00000029402	Snrnp35	100	83.471	ENSSPUG00000012768	SNRNP35	93	72.358	Sphenodon_punctatus
ENSMUSG00000029402	Snrnp35	100	77.686	ENSSPAG00000008207	snrnp35	79	80.588	Stegastes_partitus
ENSMUSG00000029402	Snrnp35	100	95.041	ENSSSCG00000022212	SNRNP35	99	91.038	Sus_scrofa
ENSMUSG00000029402	Snrnp35	100	90.083	ENSTGUG00000005364	-	100	76.446	Taeniopygia_guttata
ENSMUSG00000029402	Snrnp35	100	87.603	ENSTGUG00000015471	-	91	75.820	Taeniopygia_guttata
ENSMUSG00000029402	Snrnp35	100	77.686	ENSTNIG00000009984	snrnp35	80	80.357	Tetraodon_nigroviridis
ENSMUSG00000029402	Snrnp35	100	95.041	ENSTBEG00000002309	SNRNP35	99	87.805	Tupaia_belangeri
ENSMUSG00000029402	Snrnp35	100	96.694	ENSUAMG00000012611	SNRNP35	100	89.431	Ursus_americanus
ENSMUSG00000029402	Snrnp35	100	96.694	ENSUMAG00000003914	SNRNP35	97	89.431	Ursus_maritimus
ENSMUSG00000029402	Snrnp35	100	95.868	ENSVVUG00000027761	-	100	88.211	Vulpes_vulpes
ENSMUSG00000029402	Snrnp35	100	81.818	ENSXMAG00000019885	snrnp35	67	84.524	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	18559850.	ISS	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process