EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029415 (Gene tree)
Gene ID: 231452
Gene Symbol: Sdad1
Alias: -
Full Name: SDA1 domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 26470
Position: chr5: 92284010-92310479
Accession: 2140779
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000031364	-	5020	-	ENSMUSP00000031364	687 (aa)	-	A0A0R4J0B7
ENSMUST00000202870	-	578	-	ENSMUSP00000144014	64 (aa)	-	A0A0J9YU58
ENSMUST00000202604	-	996	-	-	- (aa)	-	-
ENSMUST00000201532	-	889	-	-	- (aa)	-	-
ENSMUST00000201084	-	786	-	-	- (aa)	-	-
ENSMUST00000202903	-	708	-	-	- (aa)	-	-
ENSMUST00000201143	-	2156	-	ENSMUSP00000144446	686 (aa)	-	A0A0J9YV20

Gene Model

Click here to download ENSMUSG00000029415's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029415's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029415	Sdad1	92	42.772	WBGene00012676	pro-3	94	36.460	Caenorhabditis_elegans
ENSMUSG00000029415	Sdad1	100	95.312	ENSG00000198301	SDAD1	100	94.032	Homo_sapiens
ENSMUSG00000029415	Sdad1	99	34.545	YGR245C		99	35.104	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000055	ribosomal large subunit export from nucleus	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0015031	protein transport	-	IEA	Process
GO:0030036	actin cytoskeleton organization	21873635.	IBA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042273	ribosomal large subunit biogenesis	-	IEA	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process