EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000029427 (Gene tree)
Gene ID: 70650
Gene Symbol: Zcchc8
Alias: 5730565F05Rik
Full Name: zinc finger%2C CCHC domain containing 8
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 22807 bases
Position: chr5:123698294-123721100
Accession: 1917900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000143723	zf-CCHC	PF00098.23	2.3e-05	1	1
ENSMUSP00000031376	zf-CCHC	PF00098.23	0.00028	1	1
ENSMUSP00000142363	zf-CCHC	PF00098.23	0.00028	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000031376	-	4286	XM_006530457	ENSMUSP00000031376	709 (aa)	XP_006530520	Q9CYA6
ENSMUST00000196042	-	738	-	-	- (aa)	-	-
ENSMUST00000200161	-	531	-	ENSMUSP00000143723	103 (aa)	-	A0A0G2JGW3
ENSMUST00000198826	-	751	-	ENSMUSP00000143781	105 (aa)	-	A0A0G2JH09
ENSMUST00000196282	-	4350	-	ENSMUSP00000142363	709 (aa)	-	Q9CYA6
ENSMUST00000199875	-	1868	-	-	- (aa)	-	-
ENSMUST00000196001	-	506	-	ENSMUSP00000142531	54 (aa)	-	A0A0G2JDW3
ENSMUST00000196333	-	690	-	ENSMUSP00000143139	173 (aa)	-	A0A0G2JFE4
ENSMUST00000200503	-	321	-	ENSMUSP00000142383	107 (aa)	-	A0A0G2JDI6

Gene Model

Click here to download ENSMUSG00000029427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000029427's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000029427	Zcchc8	100	79.747	ENSG00000033030	ZCCHC8	100	89.474	Homo_sapiens
ENSMUSG00000029427	Zcchc8	100	78.042	ENSAMEG00000014731	ZCCHC8	100	77.902	Ailuropoda_melanoleuca
ENSMUSG00000029427	Zcchc8	78	67.500	ENSACIG00000002185	zcchc8	100	38.245	Amphilophus_citrinellus
ENSMUSG00000029427	Zcchc8	79	89.024	ENSAPLG00000007582	ZCCHC8	99	59.808	Anas_platyrhynchos
ENSMUSG00000029427	Zcchc8	100	80.591	ENSANAG00000035627	ZCCHC8	100	80.450	Aotus_nancymaae
ENSMUSG00000029427	Zcchc8	100	81.882	ENSBTAG00000006114	ZCCHC8	100	81.742	Bos_taurus
ENSMUSG00000029427	Zcchc8	100	77.700	ENSCJAG00000020409	ZCCHC8	100	78.261	Callithrix_jacchus
ENSMUSG00000029427	Zcchc8	100	80.529	ENSCAFG00000007859	ZCCHC8	100	81.066	Canis_familiaris
ENSMUSG00000029427	Zcchc8	100	79.778	ENSCAFG00020016406	ZCCHC8	99	81.291	Canis_lupus_dingo
ENSMUSG00000029427	Zcchc8	100	81.958	ENSCHIG00000000649	ZCCHC8	100	81.818	Capra_hircus
ENSMUSG00000029427	Zcchc8	100	79.466	ENSTSYG00000011362	ZCCHC8	100	79.466	Carlito_syrichta
ENSMUSG00000029427	Zcchc8	80	96.341	ENSCAPG00000017455	ZCCHC8	99	79.257	Cavia_aperea
ENSMUSG00000029427	Zcchc8	99	78.581	ENSCPOG00000014385	ZCCHC8	99	79.277	Cavia_porcellus
ENSMUSG00000029427	Zcchc8	100	79.606	ENSCCAG00000028625	ZCCHC8	100	79.606	Cebus_capucinus
ENSMUSG00000029427	Zcchc8	100	78.903	ENSCATG00000041134	ZCCHC8	100	78.903	Cercocebus_atys
ENSMUSG00000029427	Zcchc8	100	74.230	ENSCSAG00000002121	ZCCHC8	100	74.230	Chlorocebus_sabaeus
ENSMUSG00000029427	Zcchc8	79	91.358	ENSCPBG00000002676	ZCCHC8	100	62.297	Chrysemys_picta_bellii
ENSMUSG00000029427	Zcchc8	100	90.268	ENSCGRG00001023706	Zcchc8	100	90.127	Cricetulus_griseus_chok1gshd
ENSMUSG00000029427	Zcchc8	100	90.268	ENSCGRG00000015199	Zcchc8	100	90.127	Cricetulus_griseus_crigri
ENSMUSG00000029427	Zcchc8	80	95.122	ENSDNOG00000046140	-	100	82.430	Dasypus_novemcinctus
ENSMUSG00000029427	Zcchc8	100	80.478	ENSDORG00000008756	Zcchc8	100	80.056	Dipodomys_ordii
ENSMUSG00000029427	Zcchc8	80	93.902	ENSETEG00000004735	ZCCHC8	89	73.540	Echinops_telfairi
ENSMUSG00000029427	Zcchc8	80	96.341	ENSEASG00005012441	ZCCHC8	97	80.414	Equus_asinus_asinus
ENSMUSG00000029427	Zcchc8	99	81.073	ENSECAG00000006984	ZCCHC8	100	80.450	Equus_caballus
ENSMUSG00000029427	Zcchc8	100	82.865	ENSFCAG00000027671	ZCCHC8	100	82.725	Felis_catus
ENSMUSG00000029427	Zcchc8	79	88.889	ENSFALG00000009102	ZCCHC8	99	60.731	Ficedula_albicollis
ENSMUSG00000029427	Zcchc8	80	96.341	ENSFDAG00000010964	ZCCHC8	86	88.300	Fukomys_damarensis
ENSMUSG00000029427	Zcchc8	79	87.654	ENSGALG00000004486	ZCCHC8	99	61.119	Gallus_gallus
ENSMUSG00000029427	Zcchc8	78	61.250	ENSGACG00000008163	zcchc8	99	41.791	Gasterosteus_aculeatus
ENSMUSG00000029427	Zcchc8	79	92.593	ENSGAGG00000007842	ZCCHC8	100	62.162	Gopherus_agassizii
ENSMUSG00000029427	Zcchc8	100	83.404	ENSSTOG00000001683	ZCCHC8	100	83.263	Ictidomys_tridecemlineatus
ENSMUSG00000029427	Zcchc8	80	96.341	ENSJJAG00000011650	Zcchc8	100	81.195	Jaculus_jaculus
ENSMUSG00000029427	Zcchc8	100	77.127	ENSLAFG00000016477	ZCCHC8	100	76.848	Loxodonta_africana
ENSMUSG00000029427	Zcchc8	100	78.903	ENSMFAG00000045203	ZCCHC8	100	78.903	Macaca_fascicularis
ENSMUSG00000029427	Zcchc8	100	79.044	ENSMMUG00000013643	ZCCHC8	100	79.044	Macaca_mulatta
ENSMUSG00000029427	Zcchc8	100	76.090	ENSMLEG00000031615	ZCCHC8	100	76.090	Mandrillus_leucophaeus
ENSMUSG00000029427	Zcchc8	79	86.585	ENSMGAG00000004799	ZCCHC8	99	62.575	Meleagris_gallopavo
ENSMUSG00000029427	Zcchc8	100	89.986	ENSMAUG00000018909	Zcchc8	100	89.986	Mesocricetus_auratus
ENSMUSG00000029427	Zcchc8	100	82.725	ENSMICG00000013486	ZCCHC8	100	82.584	Microcebus_murinus
ENSMUSG00000029427	Zcchc8	79	61.728	ENSMMOG00000017082	zcchc8	99	37.484	Mola_mola
ENSMUSG00000029427	Zcchc8	79	92.593	ENSMODG00000012264	ZCCHC8	100	69.342	Monodelphis_domestica
ENSMUSG00000029427	Zcchc8	99	97.059	MGP_CAROLIEiJ_G0027732	Zcchc8	100	97.059	Mus_caroli
ENSMUSG00000029427	Zcchc8	100	95.769	MGP_PahariEiJ_G0024312	Zcchc8	100	95.769	Mus_pahari
ENSMUSG00000029427	Zcchc8	100	99.295	MGP_SPRETEiJ_G0028730	Zcchc8	100	99.295	Mus_spretus
ENSMUSG00000029427	Zcchc8	99	82.910	ENSMPUG00000001986	ZCCHC8	100	82.419	Mustela_putorius_furo
ENSMUSG00000029427	Zcchc8	100	77.608	ENSMLUG00000005334	ZCCHC8	100	76.495	Myotis_lucifugus
ENSMUSG00000029427	Zcchc8	100	82.123	ENSNGAG00000015385	Zcchc8	100	81.729	Nannospalax_galili
ENSMUSG00000029427	Zcchc8	100	79.606	ENSNLEG00000001723	ZCCHC8	100	79.606	Nomascus_leucogenys
ENSMUSG00000029427	Zcchc8	83	88.372	ENSMEUG00000003497	ZCCHC8	99	71.028	Notamacropus_eugenii
ENSMUSG00000029427	Zcchc8	100	71.888	ENSOPRG00000013758	ZCCHC8	100	71.849	Ochotona_princeps
ENSMUSG00000029427	Zcchc8	84	85.227	ENSOANG00000006199	ZCCHC8	100	64.912	Ornithorhynchus_anatinus
ENSMUSG00000029427	Zcchc8	100	80.365	ENSOCUG00000013759	ZCCHC8	100	80.224	Oryctolagus_cuniculus
ENSMUSG00000029427	Zcchc8	80	96.341	ENSOGAG00000015900	ZCCHC8	100	80.763	Otolemur_garnettii
ENSMUSG00000029427	Zcchc8	100	80.668	ENSOARG00000010728	ZCCHC8	100	78.999	Ovis_aries
ENSMUSG00000029427	Zcchc8	100	79.887	ENSPPAG00000044102	ZCCHC8	100	79.887	Pan_paniscus
ENSMUSG00000029427	Zcchc8	100	82.303	ENSPPRG00000023848	ZCCHC8	100	82.163	Panthera_pardus
ENSMUSG00000029427	Zcchc8	100	82.725	ENSPTIG00000017015	ZCCHC8	100	82.584	Panthera_tigris_altaica
ENSMUSG00000029427	Zcchc8	100	79.887	ENSPTRG00000005579	ZCCHC8	100	79.887	Pan_troglodytes
ENSMUSG00000029427	Zcchc8	79	90.123	ENSPSIG00000011004	ZCCHC8	94	59.496	Pelodiscus_sinensis
ENSMUSG00000029427	Zcchc8	77	53.165	ENSPMGG00000000988	zcchc8	82	38.529	Periophthalmus_magnuspinnatus
ENSMUSG00000029427	Zcchc8	100	89.466	ENSPEMG00000007962	Zcchc8	100	89.466	Peromyscus_maniculatus_bairdii
ENSMUSG00000029427	Zcchc8	79	93.827	ENSPCIG00000028643	ZCCHC8	99	68.163	Phascolarctos_cinereus
ENSMUSG00000029427	Zcchc8	100	76.793	ENSPPYG00000005068	ZCCHC8	100	76.653	Pongo_abelii
ENSMUSG00000029427	Zcchc8	80	93.902	ENSPCAG00000016551	ZCCHC8	100	71.489	Procavia_capensis
ENSMUSG00000029427	Zcchc8	100	79.073	ENSPCOG00000014512	ZCCHC8	100	77.949	Propithecus_coquereli
ENSMUSG00000029427	Zcchc8	100	80.450	ENSPVAG00000001276	ZCCHC8	100	80.169	Pteropus_vampyrus
ENSMUSG00000029427	Zcchc8	100	92.525	ENSRNOG00000001243	Zcchc8	100	92.384	Rattus_norvegicus
ENSMUSG00000029427	Zcchc8	100	58.824	ENSRBIG00000044855	ZCCHC8	100	58.824	Rhinopithecus_bieti
ENSMUSG00000029427	Zcchc8	100	78.622	ENSRROG00000030441	ZCCHC8	100	78.622	Rhinopithecus_roxellana
ENSMUSG00000029427	Zcchc8	100	79.606	ENSSBOG00000032964	ZCCHC8	100	80.131	Saimiri_boliviensis_boliviensis
ENSMUSG00000029427	Zcchc8	79	90.476	ENSSHAG00000010725	ZCCHC8	99	66.345	Sarcophilus_harrisii
ENSMUSG00000029427	Zcchc8	79	80.247	ENSSFOG00015018295	zcchc8	99	49.067	Scleropages_formosus
ENSMUSG00000029427	Zcchc8	80	90.244	ENSSARG00000003982	ZCCHC8	100	69.048	Sorex_araneus
ENSMUSG00000029427	Zcchc8	79	87.654	ENSSPUG00000011326	ZCCHC8	95	61.204	Sphenodon_punctatus
ENSMUSG00000029427	Zcchc8	100	81.742	ENSSSCG00000009792	ZCCHC8	89	81.601	Sus_scrofa
ENSMUSG00000029427	Zcchc8	79	88.889	ENSTGUG00000006286	ZCCHC8	100	61.656	Taeniopygia_guttata
ENSMUSG00000029427	Zcchc8	79	45.783	ENSTRUG00000008040	zcchc8	93	43.373	Takifugu_rubripes
ENSMUSG00000029427	Zcchc8	78	61.250	ENSTNIG00000015824	zcchc8	99	40.646	Tetraodon_nigroviridis
ENSMUSG00000029427	Zcchc8	100	78.652	ENSTTRG00000015809	ZCCHC8	100	78.511	Tursiops_truncatus
ENSMUSG00000029427	Zcchc8	80	96.341	ENSUAMG00000013723	ZCCHC8	97	82.962	Ursus_americanus
ENSMUSG00000029427	Zcchc8	100	82.213	ENSUMAG00000005282	ZCCHC8	100	82.759	Ursus_maritimus
ENSMUSG00000029427	Zcchc8	100	80.224	ENSVVUG00000017779	ZCCHC8	99	81.032	Vulpes_vulpes
ENSMUSG00000029427	Zcchc8	79	82.716	ENSXETG00000007797	zcchc8	99	54.251	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0031499	TRAMP complex	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component